genome.fa.s4.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  5  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1322971--1323010	9	4.8	9	76	17	50	47	37	2	12	1.55
1324031--1324065	17	2.1	17	100	0	70	22	5	31	40	1.78
1324728--1324761	14	2.4	14	90	0	50	50	0	2	47	1.16
1328469--1328532	31	2.1	31	96	0	119	26	28	23	21	1.99
1328469--1328516	15	3.1	15	73	26	55	27	31	20	20	1.98
1328476--1328535	16	3.8	16	79	20	72	25	23	28	23	2.00
1329053--1329091	14	2.8	14	96	0	69	48	7	15	28	1.72
1332387--1332438	24	2.2	24	82	6	61	55	3	5	34	1.42
1340810--1341010	100	2.0	101	99	0	395	38	7	6	46	1.60
1345771--1345813	22	1.9	23	90	4	70	32	4	0	62	1.15
1364378--1364419	20	2.1	20	100	0	84	40	4	19	35	1.72
1382842--1382906	27	2.5	27	82	9	73	60	3	15	21	1.49
1383314--1383390	38	2.0	40	84	7	104	59	5	3	31	1.37
1385349--1385394	22	2.0	22	87	8	65	43	0	4	52	1.21
1387970--1388007	19	2.0	20	94	5	69	65	0	2	31	1.06
1390198--1390490	154	1.9	154	84	0	397	43	10	7	38	1.68
1400321--1400355	18	1.9	18	94	0	61	42	5	51	0	1.25
1402521--1402549	15	1.9	15	100	0	58	27	20	3	48	1.66
1406094--1406181	45	2.0	45	86	0	122	40	18	25	15	1.90
1409726--1409752	2	13.5	2	100	0	54	51	0	0	48	1.00
1410987--1411016	3	10.0	3	100	0	60	0	33	33	33	1.58
1433591--1433636	9	5.1	9	94	0	83	45	13	10	30	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1436847--1436895	17	2.9	16	72	21	55	67	2	0	30	1.02
1440483--1440793	171	1.8	172	89	2	491	35	19	17	27	1.94
1451130--1451268	46	3.0	46	91	0	224	29	27	9	33	1.88
1453317--1453534	111	1.9	113	81	3	262	46	8	16	27	1.77
1456151--1456200	2	25.0	2	100	0	100	0	0	50	50	1.00
1457197--1457255	31	2.0	29	84	12	77	44	15	6	33	1.73
1464881--1464949	31	2.3	31	85	7	90	52	5	2	39	1.41
1478545--1478588	21	2.1	21	91	0	70	18	4	36	40	1.71
1481909--1481948	17	2.3	18	86	4	55	35	0	2	62	1.09
1484136--1484359	101	2.2	101	84	1	288	32	16	24	26	1.96
1497583--1497616	16	2.1	16	88	0	50	44	8	2	44	1.50
1503286--1503454	56	3.0	56	93	2	275	28	5	16	49	1.69
1509114--1509173	27	2.2	27	100	0	120	23	26	21	28	1.99
1514323--1514540	109	2.0	109	97	0	409	33	18	18	29	1.95
1516672--1516702	15	2.0	16	93	6	55	45	41	6	6	1.55
1520357--1520423	31	2.2	31	86	0	89	38	16	16	28	1.90
1524869--1524900	15	2.1	15	94	0	55	50	28	21	0	1.49
1532406--1532430	4	6.2	4	100	0	50	0	24	0	76	0.80
1552834--1552945	54	2.1	54	100	0	224	27	25	18	27	1.98
1562335--1562399	29	2.2	29	83	2	76	35	7	15	41	1.76
1565880--1565933	25	2.0	28	82	10	69	55	1	1	40	1.21
1566737--1566938	108	1.9	108	88	2	307	37	17	16	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1567627--1567662	15	2.5	15	86	4	56	52	5	5	36	1.48
1567946--1568002	3	18.7	3	92	3	96	64	0	1	33	1.04
1569095--1569149	27	2.0	28	82	10	69	9	3	36	50	1.51
1577508--1577544	20	1.9	20	88	5	58	32	5	16	45	1.70
1586985--1587923	276	3.4	278	80	9	925	32	12	10	44	1.75
1587789--1588383	304	2.0	289	83	8	750	32	13	11	41	1.81
1587925--1588386	147	3.2	146	89	3	641	32	13	11	42	1.81
1587951--1589221	574	2.3	548	85	6	1675	33	12	11	42	1.78
1588519--1588826	151	2.1	147	90	2	481	34	14	11	39	1.83
1588708--1588935	119	1.9	116	84	7	305	30	16	12	40	1.86
1588828--1589827	286	3.6	281	83	6	1122	34	12	9	43	1.75
1590611--1591127	280	1.8	278	87	2	777	35	11	7	45	1.68
1591063--1591688	155	4.0	155	84	3	763	35	15	10	38	1.81
1591080--1591688	314	2.0	310	85	3	830	35	14	10	39	1.82
1591735--1592246	271	1.9	273	88	2	769	34	11	9	44	1.73
1598253--1598284	9	3.6	9	91	0	55	25	12	21	40	1.88
1608234--1608259	4	6.5	4	100	0	52	0	23	0	76	0.78
1609201--1609242	21	2.0	22	90	4	68	23	16	54	4	1.61
1609202--1609252	21	2.4	21	83	3	57	19	17	58	3	1.54
1619480--1619518	14	2.7	14	84	4	51	35	7	2	53	1.43
1619526--1619572	15	3.1	15	81	6	58	38	2	0	59	1.09
1629010--1629191	93	2.0	93	83	2	231	35	13	25	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1631392--1631422	16	2.0	15	93	6	53	51	0	0	48	1.00
1641301--1641347	16	2.9	17	87	6	62	76	0	2	21	0.89
1646012--1646259	123	2.0	124	99	0	489	24	13	8	53	1.67
1646828--1646887	24	2.5	23	81	13	59	20	1	6	71	1.17
1647332--1647368	5	7.8	5	82	11	51	40	0	0	59	0.97
1657647--1657709	31	2.0	31	84	0	81	46	11	9	33	1.72
1677133--1677159	3	9.0	3	100	0	54	33	0	0	66	0.92
1679927--1679984	29	2.0	29	89	0	89	32	17	12	37	1.86
1680146--1680210	29	2.2	30	83	2	78	35	10	15	38	1.82
1684213--1684385	42	4.1	42	99	0	339	27	13	21	36	1.92
1692932--1693003	31	2.3	31	95	0	126	44	11	11	33	1.75
1698810--1698852	2	21.5	2	100	0	86	51	0	48	0	1.00
1705104--1705578	168	2.9	165	80	9	486	28	10	18	41	1.85
1723450--1723480	16	1.9	16	93	0	53	16	3	35	45	1.63
1727935--1728030	29	3.2	29	68	5	84	38	15	10	35	1.82
1738123--1738159	12	2.9	12	88	11	56	32	0	0	67	0.91
1738990--1739020	14	2.2	14	94	0	53	29	0	0	70	0.87
1740037--1740151	57	2.0	57	100	0	230	21	22	10	45	1.82
1742122--1742341	68	3.4	61	93	5	282	45	7	6	40	1.58
1742152--1742341	68	2.8	68	99	0	371	46	7	5	40	1.56
1749816--1749840	13	1.9	13	100	0	50	76	0	0	24	0.80
1752064--1752236	55	3.2	54	86	8	237	21	20	1	56	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1752820--1753034	113	1.8	115	89	7	335	33	19	15	32	1.93
1753172--1753310	56	2.4	57	85	7	185	19	25	19	35	1.95
1753172--1753328	56	2.8	56	81	5	156	21	24	17	36	1.94
1755862--1755892	2	15.5	2	93	0	53	48	3	48	0	1.17
1760784--1760867	39	2.2	39	95	0	150	38	16	19	26	1.92
1763152--1763524	186	2.0	186	97	0	710	46	14	14	24	1.82
1763758--1764025	132	2.0	131	91	7	436	47	14	10	27	1.77
1773104--1773134	9	3.4	9	95	0	53	35	0	3	61	1.12
1773301--1773338	17	2.2	17	86	9	51	47	0	0	52	1.00
1773544--1773579	16	2.2	16	95	0	63	30	5	2	61	1.33
1777574--1777633	30	2.0	30	86	0	84	60	13	1	25	1.43
1777614--1777642	12	2.5	12	94	5	51	68	0	0	31	0.89
1780587--1780661	31	2.4	31	86	4	107	48	10	9	32	1.70
1784477--1784519	20	2.2	20	83	8	52	55	0	6	37	1.27
1784645--1784709	33	2.0	33	90	0	103	30	4	0	64	1.14
1786972--1787390	210	2.0	209	96	0	766	20	12	20	47	1.82
1789670--1789759	36	2.5	36	83	3	101	27	30	24	17	1.97
1791701--1791859	78	2.0	79	98	1	311	51	7	6	34	1.55
1798549--1798587	19	2.0	20	90	5	62	35	0	12	51	1.40
1799023--1799063	18	2.2	20	86	8	59	70	0	12	17	1.16
1805684--1805722	20	2.0	20	85	10	53	46	2	10	41	1.51
1808095--1808133	20	2.0	20	85	10	53	46	2	10	41	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1828097--1828128	15	2.3	15	89	10	50	40	18	0	40	1.51
1828615--1828657	6	6.8	6	86	7	59	44	16	18	20	1.87
1828622--1828657	18	1.9	19	94	5	65	44	16	19	19	1.87
1828635--1828775	45	3.1	45	87	2	194	40	19	18	21	1.92
1832786--1832818	2	16.5	2	93	0	57	48	0	3	48	1.17
1835903--1835949	23	2.0	23	100	0	94	40	12	4	42	1.63
1837381--1837895	257	2.0	258	99	0	1023	42	9	9	38	1.71
1840414--1840476	30	2.1	30	82	5	74	34	7	9	47	1.65
1842344--1842486	68	2.1	69	81	6	166	33	10	14	41	1.80
1854606--1854648	21	2.0	21	86	0	59	55	2	9	32	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163