genome.fa.s4.2.7.7.80.10.50.1000.63.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  63  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20754322--20754407	42	2.1	41	84	2	109	43	13	24	18	1.87
20759257--20759391	67	2.0	67	92	0	225	20	17	33	28	1.95
20774195--20774219	13	1.9	13	100	0	50	32	4	24	40	1.73
20776352--20776381	13	2.3	13	94	0	51	10	0	23	66	1.21
20776351--20776384	13	2.5	13	85	4	50	8	0	26	64	1.22
20778537--20778580	21	2.2	20	83	4	52	47	15	18	18	1.83
20780076--20780121	24	2.0	23	82	4	56	60	13	0	26	1.32
20780367--20780392	5	5.2	5	100	0	52	38	19	19	23	1.93
20781184--20781211	9	3.1	9	100	0	56	46	21	10	21	1.81
20786964--20787001	15	2.4	16	87	12	53	65	0	5	28	1.14
20786975--20787028	22	2.3	24	84	12	69	66	0	3	29	1.09
20787088--20787149	29	2.2	27	85	5	79	38	4	3	53	1.39
20787552--20787600	18	2.8	17	82	17	64	40	2	0	57	1.10
20804591--20804640	21	2.4	21	78	15	68	40	10	2	48	1.48
20804726--20804845	41	2.9	40	83	2	132	30	22	18	29	1.97
20805025--20805061	2	18.5	2	94	0	65	45	0	0	54	1.00
20812650--20812884	50	4.6	50	84	3	272	27	23	27	21	1.99
20812649--20812894	100	2.4	105	86	5	349	27	23	27	21	1.99
20814569--20814631	20	3.1	21	80	11	69	41	19	28	11	1.85
20820668--20820727	19	2.9	21	83	11	63	20	3	3	73	1.12
20820840--20820878	14	2.8	14	88	0	60	35	10	23	30	1.88
20825473--20825544	25	2.9	26	87	8	89	18	19	26	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20825562--20825945	188	2.0	188	93	0	651	33	10	24	32	1.89
20826070--20826099	15	2.0	15	100	0	60	33	20	26	20	1.97
20826366--20826407	20	2.2	19	83	12	50	59	4	19	16	1.54
20831232--20831351	23	5.3	23	75	4	127	32	26	16	24	1.96
20831232--20831351	46	2.7	46	86	2	154	32	26	16	24	1.96
20831575--20831615	18	2.3	18	88	12	59	43	19	0	36	1.51
20848691--20848724	16	2.1	16	88	5	50	8	0	14	76	1.01
20856136--20856347	29	7.2	29	76	3	201	24	26	12	37	1.90
20856136--20856347	59	3.6	58	84	3	255	24	26	12	37	1.90
20862034--20862252	111	2.0	111	99	0	429	37	21	12	28	1.90
20864036--20864100	32	2.0	32	93	0	112	35	12	10	41	1.78
20864487--20864771	29	9.8	29	77	4	252	21	24	13	40	1.89
20864544--20864801	87	3.0	86	80	5	252	22	24	12	39	1.89
20864475--20864777	59	5.2	58	78	5	290	23	24	13	38	1.91
20868718--20868884	43	3.9	43	83	5	196	32	25	17	23	1.97
20868718--20868884	85	2.0	86	83	5	214	32	25	17	23	1.97
20868767--20868943	83	2.1	81	80	12	196	31	24	17	25	1.97
20872914--20872960	14	3.2	14	78	18	51	65	21	4	8	1.37
20873650--20873693	14	3.1	14	86	0	61	34	45	0	20	1.51
20873643--20873696	21	2.5	21	74	14	56	35	46	0	18	1.50
20873747--20873799	14	3.8	14	74	0	52	47	26	0	26	1.53
20874120--20874200	41	2.0	41	87	0	117	27	29	18	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20874834--20874899	20	3.3	19	73	12	53	42	12	31	13	1.81
20881752--20881813	25	2.5	25	89	0	88	30	24	20	24	1.99
20881736--20881858	50	2.5	49	77	5	122	32	21	22	23	1.98
20892242--20892288	22	2.0	24	84	12	62	42	12	8	36	1.74
20897190--20897234	13	3.5	13	93	0	81	20	8	15	55	1.66
20898439--20898474	17	2.1	18	89	5	56	22	13	22	41	1.89
20900841--20900875	16	2.2	16	94	0	61	22	0	31	45	1.53
20906742--20906815	37	2.0	37	100	0	148	40	8	18	32	1.80
20913786--20913819	13	2.6	13	100	0	68	29	0	0	70	0.87
20914007--20914061	21	2.8	20	75	8	67	23	3	5	67	1.28
20914938--20915004	33	2.0	33	86	11	93	49	0	1	49	1.10
20917970--20917995	13	2.0	13	100	0	52	30	23	7	38	1.83
20932885--20932923	2	20.0	2	84	5	53	48	2	2	46	1.29
20937148--20937325	59	3.0	59	99	0	347	39	16	5	39	1.70
20939481--20939561	44	2.0	42	85	11	114	30	6	14	48	1.69
20941729--20941809	41	2.0	41	100	0	162	37	19	17	25	1.94
20944222--20944413	74	2.6	73	76	5	188	32	20	16	31	1.94
20944445--20944665	84	2.6	84	93	0	361	30	9	23	35	1.88
20945992--20946031	16	2.5	16	95	0	71	32	7	12	47	1.69
20954512--20954560	19	2.6	19	77	6	55	67	0	22	10	1.20
20979721--20979773	22	2.3	23	87	3	72	66	3	0	30	1.10
20979727--20979792	28	2.3	29	84	7	82	59	1	1	37	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20993595--20993806	87	2.4	88	87	6	306	45	10	11	32	1.75
20994181--20994211	14	2.2	14	100	0	62	29	35	16	19	1.93
20993925--20994496	285	2.0	286	99	0	1137	44	16	12	26	1.84
20994466--20994497	14	2.3	14	100	0	64	28	34	18	18	1.95
20995514--20995552	20	2.0	20	100	0	78	30	10	7	51	1.64
20995531--20995597	29	2.3	29	82	5	82	29	10	5	53	1.59
20998063--20998114	19	2.8	18	82	5	59	32	1	0	65	1.04
21000055--21000248	59	3.3	59	91	0	307	34	3	7	54	1.47
21000305--21000378	29	2.6	28	81	12	87	36	12	5	45	1.64
21000406--21000450	24	1.9	23	86	4	63	53	26	0	20	1.46
21001072--21001112	22	2.0	20	85	9	55	60	0	0	39	0.96
21000965--21001289	162	2.0	163	99	0	643	43	8	10	37	1.70
21001234--21001274	22	2.0	20	85	9	55	60	0	0	39	0.96
21002024--21002085	31	2.0	31	84	6	81	43	6	8	41	1.60
21013714--21013765	19	2.8	18	82	5	59	32	1	0	65	1.04
21015706--21015899	59	3.3	59	89	0	298	34	3	8	53	1.48
21015951--21016029	29	2.7	29	84	3	97	36	13	5	44	1.67
21016057--21016101	24	1.9	23	86	4	63	53	26	0	20	1.46
21016723--21016763	22	2.0	20	85	9	55	60	0	0	39	0.96
21017513--21017574	31	2.0	31	84	6	81	43	6	8	41	1.60
21025821--21025851	9	3.4	9	90	0	53	25	12	22	38	1.90
21033516--21033664	69	2.2	70	84	7	191	26	26	14	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21033545--21033963	69	6.1	69	74	9	180	23	23	15	36	1.94
21033699--21033963	138	1.9	137	82	2	316	23	22	16	37	1.93
21036349--21036432	41	2.1	39	88	4	123	53	16	0	29	1.43
21036366--21036427	21	3.0	22	70	15	69	51	17	0	30	1.46
21036373--21036450	12	7.0	12	71	19	62	53	15	1	29	1.50
21036400--21036450	25	2.0	25	84	0	66	54	15	1	27	1.52
21038938--21038975	20	2.0	20	84	5	51	50	0	2	47	1.15
21041359--21041402	19	2.3	19	84	0	52	70	0	4	25	1.06
21041395--21041447	17	3.2	17	86	2	63	54	0	3	41	1.18
21041491--21041535	19	2.5	19	83	16	60	28	4	2	64	1.25
21041508--21041563	29	1.9	29	85	7	78	33	3	3	58	1.32
21041485--21041569	9	9.6	8	72	17	55	29	3	2	64	1.22
21041659--21041888	91	2.6	88	86	3	336	33	9	21	35	1.86
21044037--21044103	21	3.2	21	86	0	89	2	47	19	29	1.64
21044426--21044576	18	8.7	17	69	20	75	36	0	19	43	1.57
21044426--21044619	25	7.8	25	74	21	126	36	0	19	43	1.55
21044433--21044576	9	16.4	9	71	18	56	36	0	20	42	1.57
21044477--21044811	62	5.3	61	77	17	278	34	0	18	46	1.50
21044472--21044811	44	8.0	43	88	8	452	34	0	19	46	1.50
21047010--21047674	83	8.0	83	99	0	1312	30	18	10	39	1.85
21048054--21048134	39	2.0	40	88	2	119	38	38	2	20	1.67
21048621--21048954	111	3.0	111	98	0	632	55	8	20	15	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21051283--21051321	3	13.0	3	94	0	69	0	35	0	64	0.94
21057042--21057074	13	2.8	12	90	9	50	36	9	15	39	1.79
21058139--21058379	42	5.7	43	74	12	221	21	17	26	34	1.95
21058139--21058379	85	2.8	84	87	3	329	21	17	26	34	1.95
21061030--21061240	103	2.0	104	88	5	311	36	11	10	40	1.76
21063536--21063576	20	2.0	20	90	0	64	56	7	19	17	1.64
21079657--21079819	30	5.4	29	80	10	134	38	12	26	22	1.90
21079629--21079848	90	2.5	90	83	8	261	38	12	25	23	1.90
21086651--21086868	29	7.4	30	83	6	180	36	15	26	22	1.93
21086737--21086928	30	6.4	30	80	4	183	40	14	24	21	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163