genome.fa.s4.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  99  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31959449--31959503	28	2.0	27	86	13	76	50	5	14	29	1.65
31962695--31962862	81	2.1	81	95	0	300	41	14	15	28	1.87
31963089--31963136	22	2.2	22	100	0	96	27	18	29	25	1.98
31966155--31966317	45	3.6	44	88	3	220	20	19	20	39	1.92
31968939--31969057	25	4.8	25	80	8	98	26	25	20	28	1.99
31968943--31969053	50	2.2	50	83	3	134	24	25	20	29	1.99
31971448--31971518	21	3.4	21	75	7	63	16	23	16	42	1.89
31971484--31971625	42	3.4	43	80	10	152	14	22	18	44	1.86
31971484--31971598	21	5.5	21	69	8	81	14	25	18	41	1.88
31983127--31983160	17	1.9	18	94	5	61	17	2	0	79	0.86
31983332--31983356	9	2.8	9	100	0	50	24	0	8	68	1.16
31991240--31991287	25	1.9	25	87	8	71	37	18	0	43	1.51
31996525--31996567	23	1.9	23	90	4	70	67	2	0	30	1.03
31997671--31997695	3	8.3	3	100	0	50	0	32	0	68	0.90
32005490--32005524	18	2.0	18	88	5	54	62	2	8	25	1.38
32007989--32008053	13	4.8	14	69	5	53	16	7	36	38	1.78
32012181--32012284	36	3.0	35	82	12	124	46	10	9	33	1.71
32012180--32012646	17	26.6	18	71	13	305	47	12	11	29	1.76
32012228--32012643	69	5.9	68	72	11	252	47	12	11	29	1.76
32012178--32012646	35	13.3	35	74	10	275	47	12	11	29	1.76
32012548--32012644	16	5.6	18	72	16	69	45	12	15	26	1.82
32012898--32012938	11	3.9	11	78	9	50	0	17	0	82	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32012898--32012945	26	2.0	24	88	12	71	0	18	0	81	0.70
32013238--32013310	7	10.1	7	75	16	51	4	17	0	78	0.91
32013252--32013310	20	2.8	21	76	18	68	1	22	0	76	0.88
32013633--32013699	29	2.3	29	94	0	116	41	8	19	29	1.82
32013699--32013728	15	1.9	16	93	6	53	16	0	10	73	1.09
32013715--32013742	11	2.5	11	100	0	56	14	0	7	78	0.95
32013923--32016953	76	39.9	76	96	1	5414	33	20	18	27	1.96
32029467--32029504	20	1.9	20	100	0	76	42	10	10	36	1.74
32029478--32029682	34	5.8	34	73	14	132	42	10	12	34	1.78
32029555--32029683	18	7.3	17	70	11	89	41	11	13	33	1.80
32029609--32029946	186	1.8	181	79	10	393	36	13	15	34	1.87
32030192--32030226	6	5.7	6	86	6	52	0	20	0	80	0.72
32030187--32030230	19	2.4	18	88	3	61	0	18	2	79	0.83
32030520--32030578	7	8.3	7	75	17	50	0	23	0	76	0.79
32030533--32030582	20	2.5	20	87	3	66	0	30	0	70	0.88
32030526--32030572	13	3.8	13	76	18	55	0	27	0	72	0.85
32030902--32030981	29	2.8	29	86	7	126	42	6	21	30	1.77
32035523--32035572	21	2.3	22	86	3	66	44	2	0	54	1.11
32035823--32035870	24	2.0	23	84	4	60	39	2	0	58	1.10
32036577--32036636	20	3.0	19	78	4	66	51	15	13	20	1.75
32036577--32036714	21	6.6	22	71	12	62	52	13	13	21	1.73
32060440--32060540	53	1.9	53	89	4	159	31	10	27	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32060665--32060927	61	4.3	61	80	0	285	30	16	27	25	1.97
32060665--32060927	122	2.2	121	83	0	328	30	16	27	25	1.97
32060878--32061177	146	2.1	146	83	3	379	30	15	23	31	1.95
32063203--32063306	42	2.5	42	81	9	115	42	16	22	19	1.89
32073565--32073633	33	2.1	33	88	0	102	26	15	43	14	1.85
32073628--32073690	23	2.7	23	90	0	90	20	14	49	15	1.80
32073651--32073779	56	2.3	56	83	2	179	23	12	45	18	1.83
32076426--32076483	23	2.7	21	79	10	71	31	12	3	53	1.54
32076431--32076475	23	2.0	23	90	0	72	28	11	4	55	1.54
32076695--32076726	16	2.0	16	93	0	55	34	12	28	25	1.92
32076709--32076801	45	2.1	45	97	0	177	24	15	26	33	1.95
32084552--32084612	32	1.9	32	96	3	115	44	13	9	32	1.76
32096229--32096293	31	2.1	32	97	2	123	44	12	9	33	1.74
32098917--32098955	17	2.2	18	86	4	53	28	7	0	64	1.21
32099026--32099066	19	2.1	20	86	4	57	48	0	4	46	1.23
32100635--32100708	38	1.9	38	86	5	105	36	1	31	31	1.66
32105988--32106356	74	4.9	74	89	6	510	37	4	14	43	1.65
32105988--32106356	154	2.4	154	86	8	531	37	4	14	43	1.65
32107070--32107230	41	3.9	41	85	2	216	30	21	24	23	1.99
32107396--32107469	34	2.1	35	85	9	98	32	9	20	37	1.85
32111653--32111766	43	2.7	43	91	0	183	25	28	15	30	1.96
32116122--32116197	38	2.0	38	97	0	143	26	27	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32122880--32122990	19	5.8	19	89	0	159	36	9	15	38	1.81
32129941--32130025	21	4.0	21	79	7	91	35	22	22	20	1.96
32129981--32130025	23	2.0	23	100	0	90	35	22	20	22	1.96
32132004--32132072	33	2.1	33	100	0	138	42	21	2	33	1.68
32137847--32138219	186	2.0	186	100	0	746	32	18	13	35	1.90
32141035--32141068	3	11.3	3	100	0	68	67	0	0	32	0.91
32154875--32155052	88	2.0	89	98	1	349	41	8	15	34	1.78
32161432--32161523	25	3.7	26	76	5	91	34	19	22	22	1.96
32168518--32168566	13	3.8	13	76	12	57	22	6	8	63	1.44
32174389--32174425	16	2.2	17	90	4	58	5	51	2	40	1.39
32179576--32179840	131	2.0	132	96	3	491	32	18	9	40	1.81
32179854--32179894	21	2.0	21	90	0	64	31	31	4	31	1.79
32189380--32189431	19	3.0	17	78	13	61	67	1	0	30	1.02
32189912--32189955	23	1.9	23	85	0	61	31	15	13	38	1.87
32196790--32196828	19	2.1	19	85	0	51	53	0	0	46	1.00
32198273--32198311	21	1.9	19	85	10	51	17	10	10	61	1.55
32207502--32207543	22	1.9	22	85	0	57	47	2	4	45	1.36
32207916--32208078	81	2.0	82	98	1	319	39	17	9	33	1.82
32209429--32209534	53	2.0	54	86	1	151	50	13	7	29	1.69
32212700--32212793	3	31.0	3	95	2	170	1	32	0	65	0.99
32213234--32213291	29	2.0	29	86	0	80	46	8	13	31	1.74
32214049--32214103	16	3.4	16	82	5	67	34	5	27	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32214089--32214175	44	1.9	46	86	9	126	31	5	26	36	1.80
32214299--32214341	20	2.2	20	95	0	77	58	0	2	39	1.11
32218895--32219001	51	2.1	51	96	0	196	44	14	0	40	1.46
32220607--32220817	50	4.2	50	91	2	325	23	2	27	45	1.65
32220705--32220746	21	2.0	20	90	4	66	23	0	28	47	1.52
32220756--32220796	21	2.0	21	90	0	64	21	2	26	48	1.63
32220775--32220853	36	2.2	36	93	0	131	24	2	30	43	1.67
32220725--32221002	86	3.1	86	79	12	340	26	1	26	44	1.64
32220675--32221102	136	3.1	135	80	7	451	25	2	26	45	1.65
32220811--32221208	50	8.0	50	91	1	505	26	2	25	45	1.66
32220944--32221132	21	7.9	21	64	25	63	24	3	24	46	1.69
32220581--32221209	285	2.2	287	87	4	895	26	2	25	45	1.66
32220813--32221211	150	2.7	149	87	0	582	26	2	25	45	1.66
32221718--32221752	18	1.9	18	94	0	61	34	8	31	25	1.86
32222405--32222429	7	3.6	7	100	0	50	60	12	0	28	1.32
32223565--32223684	51	2.4	51	87	1	170	44	0	24	31	1.54
32224799--32224933	41	3.3	40	68	12	112	47	3	2	45	1.35
32224796--32224959	82	2.0	82	97	0	310	48	4	2	44	1.37
32225452--32225489	6	6.2	6	90	3	58	0	60	0	39	0.97
32225454--32225489	18	2.0	18	100	0	72	0	61	0	38	0.96
32229732--32229786	21	2.6	21	88	8	85	27	38	9	25	1.86
32232156--32232210	27	2.0	27	92	0	92	38	5	30	25	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32232467--32232529	23	2.6	25	85	10	94	0	33	19	47	1.49
32233399--32233669	128	2.1	125	78	9	271	28	23	27	19	1.99
32233691--32233716	11	2.4	11	100	0	52	38	0	0	61	0.96
32233677--32233741	30	2.1	32	88	5	98	43	0	0	56	0.99
32233699--32233737	20	2.0	20	89	0	60	35	0	0	64	0.94
32246620--32246659	20	2.0	20	90	0	62	45	12	10	32	1.75
32246607--32246672	34	1.9	35	90	3	107	43	15	7	33	1.74
32247668--32247962	6	49.2	6	99	0	518	52	13	0	33	1.41
32249895--32249932	6	6.2	6	87	6	58	0	18	0	81	0.69
32250416--32250480	30	2.3	27	84	7	76	44	3	0	52	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163