genome.fa.s4.2.7.7.80.10.50.1000.159.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  159  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53403999--53404070	22	3.1	22	80	7	72	47	4	2	45	1.36
53413179--53413222	23	1.9	23	90	0	70	61	6	2	29	1.34
53421209--53421604	213	1.9	212	97	1	749	34	5	14	46	1.66
53423162--53423226	24	2.7	25	75	15	73	56	1	0	41	1.08
53423824--53423862	14	2.8	13	85	11	51	66	2	2	28	1.18
53424371--53424417	23	2.0	24	83	4	60	46	19	2	31	1.61
53426535--53426559	2	12.5	2	100	0	50	48	0	0	52	1.00
53427757--53427789	2	16.5	2	100	0	66	51	0	0	48	1.00
53428521--53428781	123	2.1	124	97	1	488	45	7	12	34	1.69
53430434--53430462	5	5.8	5	100	0	58	0	17	0	82	0.66
53444598--53444689	46	2.0	46	89	4	143	27	5	29	38	1.79
53444598--53444709	39	2.6	42	83	9	122	29	5	29	35	1.80
53444848--53444886	17	2.5	15	84	15	60	61	0	0	38	0.96
53444853--53444886	17	2.0	17	100	0	68	58	0	0	41	0.98
53444919--53444958	20	2.0	21	85	5	55	60	5	0	35	1.19
53449259--53449300	15	2.7	16	82	14	52	52	2	0	45	1.13
53449268--53449309	15	2.9	15	82	10	52	52	0	0	47	1.00
53456317--53456341	11	2.3	11	100	0	50	56	0	0	44	0.99
53459695--53459719	5	5.0	5	100	0	50	0	20	60	20	1.37
53463922--53464122	112	1.8	111	81	5	253	37	16	14	31	1.89
53472321--53472367	24	2.0	24	95	0	85	31	4	23	40	1.74
53475937--53475989	26	2.0	26	88	0	79	39	7	16	35	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53478671--53478708	20	1.9	20	84	10	51	18	10	15	55	1.68
53480559--53480586	14	2.0	14	100	0	56	57	0	42	0	0.99
53511278--53511314	18	2.1	18	100	0	74	43	16	16	24	1.87
53511373--53511406	17	1.9	18	94	5	61	41	50	0	8	1.34
53511514--53511562	18	2.7	18	87	0	80	24	6	22	46	1.74
53511514--53511562	9	5.4	9	90	0	71	24	6	22	46	1.74
53511724--53511749	12	2.2	12	100	0	52	26	23	26	23	2.00
53512182--53512223	13	3.5	12	78	9	50	23	21	2	52	1.59
53512752--53512806	27	2.0	27	92	0	92	38	9	18	34	1.82
53514070--53514147	40	1.9	39	87	10	113	24	30	25	19	1.98
53514223--53514417	95	2.0	95	86	6	270	40	2	17	40	1.62
53514893--53514943	11	5.1	11	77	22	67	45	0	0	54	0.99
53514920--53515137	116	1.9	114	86	9	313	41	18	1	38	1.60
53515206--53515287	40	2.0	41	83	4	103	21	28	25	24	1.99
53522374--53522402	3	9.7	3	100	0	58	0	31	0	68	0.89
53544774--53544811	3	12.7	3	100	0	76	65	0	0	34	0.93
53548607--53548775	93	1.8	92	82	3	214	39	19	8	32	1.81
53550915--53550948	15	2.3	15	94	0	59	8	0	41	50	1.34
53553422--53553462	20	2.0	20	86	9	57	58	2	14	24	1.49
53553845--53553890	17	2.6	18	76	13	51	63	0	8	28	1.24
53554883--53554949	33	2.0	33	100	0	134	20	17	11	49	1.79
53555156--53555200	21	2.1	21	87	0	63	13	2	40	44	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53582035--53582891	4	214.2	4	100	0	1714	25	0	24	49	1.50
53591932--53591966	17	2.0	18	88	5	54	54	0	0	45	0.99
53599915--53599968	25	2.2	24	78	9	56	38	1	1	57	1.20
53600130--53600157	12	2.3	12	100	0	56	35	10	14	39	1.81
53600169--53600248	24	3.2	23	70	16	70	41	3	7	47	1.50
53600155--53600247	51	1.9	49	85	12	131	39	4	6	49	1.48
53600170--53600255	26	3.4	24	69	22	68	41	3	6	47	1.47
53603520--53603753	116	2.0	116	96	0	432	33	12	17	35	1.88
53620591--53621152	186	3.0	187	93	1	941	33	15	15	35	1.89
53624215--53624243	2	14.5	2	100	0	58	48	0	0	51	1.00
53629755--53629803	24	2.1	23	84	3	62	36	4	2	57	1.30
53640255--53640285	6	5.2	6	96	0	53	12	19	32	35	1.90
53641690--53641721	14	2.3	14	94	0	55	0	50	0	50	1.00
53642040--53642076	19	1.9	19	88	0	56	70	0	0	29	0.88
53656554--53656595	15	2.5	16	81	18	50	50	11	0	38	1.40
53661699--53661738	20	2.0	20	100	0	80	35	5	15	45	1.68
53661885--53661932	18	2.7	18	75	12	53	0	35	12	52	1.40
53661919--53662006	9	9.8	9	77	11	83	1	30	3	64	1.17
53665714--53665746	12	2.8	12	90	0	57	0	15	12	72	1.12
53666758--53666845	43	2.1	42	93	2	149	37	11	18	32	1.86
53667757--53667790	16	2.2	16	90	10	54	23	5	0	70	1.09
53671262--53671898	318	2.0	318	100	0	1274	42	16	11	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53676055--53676116	21	3.0	20	77	9	63	38	0	1	59	1.07
53688213--53688243	7	4.4	7	91	0	53	35	0	16	48	1.46
53689605--53689629	12	2.1	12	100	0	50	56	0	8	36	1.29
53689578--53689624	20	2.3	21	78	10	62	57	2	2	38	1.23
53693941--53693979	17	2.2	18	86	4	53	66	0	0	33	0.92
53710866--53710941	31	2.5	30	89	4	107	51	10	13	25	1.72
53711279--53711316	2	19.0	2	88	0	58	50	5	0	44	1.24
53711351--53711428	37	2.1	37	100	0	156	23	7	24	44	1.79
53725305--53725478	96	1.8	96	87	0	258	37	17	7	37	1.78
53727730--53727790	31	2.0	30	90	6	97	44	1	3	50	1.28
53733365--53733776	88	4.7	88	87	2	542	27	22	25	24	2.00
53733456--53733693	45	5.4	45	66	9	157	26	22	26	23	2.00
53733427--53733560	44	3.1	43	67	4	115	25	20	28	25	1.99
53733443--53733823	176	2.2	176	85	1	487	25	24	25	24	2.00
53733344--53733823	264	1.8	264	80	5	585	26	23	25	24	2.00
53733789--53733885	44	2.2	44	83	3	124	25	18	22	32	1.97
53733849--53733986	44	3.2	44	75	2	161	31	18	23	26	1.97
53733849--53734012	87	1.9	87	89	0	256	30	21	21	26	1.98
53733856--53734042	87	2.1	87	83	0	221	32	20	20	26	1.97
53741651--53741680	14	2.2	14	94	5	53	26	0	0	73	0.84
53741651--53741681	16	1.9	16	93	0	53	29	0	0	70	0.87
53742636--53742706	31	2.3	31	85	4	90	50	16	2	29	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53760611--53760752	57	2.5	56	85	6	180	24	15	8	51	1.71
53760966--53760991	4	6.5	4	100	0	52	53	0	0	46	1.00
53761600--53761660	31	2.0	31	86	0	86	37	11	18	32	1.86
53764536--53764744	55	3.9	54	89	3	323	26	18	0	54	1.48
53764738--53765015	112	2.5	112	85	5	382	32	14	12	41	1.83
53769267--53769325	29	2.0	30	90	3	93	55	11	3	28	1.52
53776014--53776056	18	2.4	18	96	0	77	0	37	9	53	1.33
53776475--53776509	17	2.0	17	88	5	52	65	0	2	31	1.07
53777538--53777600	30	2.1	30	93	0	108	25	3	15	55	1.55
53777895--53777957	31	2.0	31	96	0	117	33	6	4	55	1.46
53777895--53777978	31	2.6	31	88	7	105	35	5	5	52	1.50
53782040--53782103	22	3.0	20	76	14	67	14	14	6	65	1.44
53782820--53782869	2	25.0	2	91	0	82	46	2	2	50	1.24
53782811--53782860	10	5.2	10	85	7	59	44	0	4	52	1.20
53782811--53782868	12	4.7	12	83	8	62	43	1	3	51	1.28
53783046--53783097	21	2.5	21	84	6	61	11	17	9	61	1.55
53783100--53783141	22	1.9	22	90	0	66	23	11	4	59	1.51
53784542--53784572	2	15.5	2	100	0	62	48	0	0	51	1.00
53790032--53790078	24	2.0	24	87	8	69	55	4	2	38	1.31
53796464--53796491	14	2.0	14	100	0	56	50	14	0	35	1.43
53802212--53802269	31	1.9	30	92	3	98	27	13	5	53	1.61
53804605--53804647	21	2.1	20	86	4	59	37	4	2	55	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53813015--53813897	4	220.8	4	100	0	1766	24	0	25	50	1.50
53822106--53822133	14	2.0	14	100	0	56	50	21	14	14	1.78
53825535--53825575	14	2.9	15	78	14	59	39	0	2	58	1.11
53825761--53825828	19	3.5	19	76	11	50	10	22	2	64	1.37
53829322--53829357	1	36.0	1	100	0	72	0	0	0	100	0.00
53829990--53830541	284	1.9	284	90	1	883	27	13	21	37	1.90
53846489--53846558	32	2.2	32	79	5	88	61	4	4	30	1.34
53849326--53849352	14	1.9	14	100	0	54	29	0	14	55	1.40
53849731--53849777	24	1.9	25	91	4	78	48	19	6	25	1.72
53850885--53850910	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163