genome.fa.s4.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  61  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20054001--20054293	82	3.6	82	82	2	356	33	29	16	20	1.95
20054001--20054293	123	2.4	123	82	7	371	33	29	16	20	1.95
20054317--20054342	13	2.0	13	100	0	52	15	15	23	46	1.83
20057298--20057413	30	3.9	28	81	11	124	24	22	26	26	2.00
20057513--20057586	26	2.9	25	75	4	76	33	22	22	20	1.97
20057816--20058211	27	14.7	27	84	4	426	20	17	21	40	1.92
20060512--20060584	34	2.1	35	84	2	94	10	23	12	53	1.69
20061214--20061411	27	7.3	27	84	4	256	42	19	20	17	1.89
20061773--20061847	28	2.7	28	82	0	96	22	25	24	28	2.00
20068045--20068127	35	2.4	35	83	4	105	7	32	10	49	1.65
20068755--20069008	27	9.4	27	80	5	280	42	20	18	18	1.89
20069195--20069257	26	2.4	26	72	0	63	19	19	20	41	1.91
20079683--20079724	21	2.0	21	85	0	57	47	11	2	38	1.53
20085777--20085836	21	2.7	23	82	12	72	31	3	11	53	1.53
20085778--20085836	23	2.6	22	78	10	66	32	3	11	52	1.54
20089356--20089402	25	1.9	24	86	4	67	51	10	19	19	1.75
20099118--20099194	33	2.3	33	82	8	93	28	16	27	27	1.97
20099084--20099343	101	2.6	102	84	4	323	30	14	26	29	1.95
20104212--20104245	6	5.7	6	85	0	50	2	14	2	79	0.97
20104209--20104245	12	3.2	11	88	11	56	2	16	2	78	0.98
20106601--20106630	13	2.3	13	94	0	51	43	10	23	23	1.83
20109436--20109478	20	2.3	18	85	14	61	20	4	4	69	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20109427--20109502	25	3.0	26	74	18	70	21	5	3	69	1.24
20117771--20117911	43	3.4	41	81	8	142	21	16	24	37	1.93
20125104--20125137	17	1.9	18	88	5	52	44	2	17	35	1.64
20129670--20129695	9	2.9	9	100	0	52	57	30	11	0	1.34
20130705--20130763	3	19.7	3	89	0	91	30	1	0	67	1.00
20131709--20131758	25	1.9	25	84	8	64	34	8	4	54	1.49
20137626--20137703	24	2.9	29	77	18	112	33	16	17	32	1.93
20144488--20144540	16	3.3	16	82	10	72	33	7	33	24	1.84
20144754--20144795	15	2.7	16	82	14	52	52	2	0	45	1.13
20144763--20144804	15	2.9	15	82	10	52	52	0	0	47	1.00
20144970--20145017	26	1.9	25	84	16	64	52	2	0	45	1.12
20144925--20145153	92	2.5	92	83	8	236	47	3	3	44	1.38
20152933--20152975	11	3.9	11	96	0	68	69	6	4	18	1.29
20152934--20152975	22	1.9	22	95	0	75	69	7	4	19	1.31
20153853--20153895	21	2.0	21	90	0	68	76	0	18	4	0.95
20153848--20153895	15	3.3	14	82	5	60	77	0	18	4	0.93
20153900--20154002	41	2.5	41	84	3	136	53	7	19	19	1.69
20164794--20164827	16	2.1	16	94	0	59	32	11	8	47	1.71
20170717--20170781	33	2.0	33	93	0	112	27	18	27	26	1.98
20170899--20170973	26	2.8	26	79	2	78	34	22	21	21	1.97
20171187--20171410	27	8.3	27	85	3	272	19	16	20	43	1.88
20171161--20171410	54	4.6	53	84	8	283	20	17	19	42	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20171188--20171400	81	2.6	81	89	2	304	19	17	20	42	1.89
20171159--20171471	27	11.6	26	76	11	179	21	16	19	42	1.89
20171699--20171758	20	3.2	19	81	11	54	21	41	21	15	1.89
20176925--20176961	17	2.1	17	90	5	56	51	0	10	37	1.37
20181101--20181147	18	2.4	20	79	17	62	29	6	2	61	1.32
20181105--20181142	18	2.1	18	95	0	67	34	5	2	57	1.35
20181585--20181617	14	2.4	14	90	5	50	27	12	18	42	1.85
20183263--20183309	24	2.0	24	91	0	76	27	17	17	38	1.91
20195343--20195381	6	6.3	6	90	3	60	64	2	17	15	1.41
20195992--20196034	6	7.0	6	91	2	68	62	0	20	16	1.32
20201428--20201534	36	3.0	36	86	2	135	41	28	13	16	1.86
20211555--20211595	21	2.0	21	85	4	57	43	2	4	48	1.37
20216129--20216185	27	2.1	27	93	0	96	33	15	19	31	1.93
20218828--20218876	20	2.5	20	81	15	66	12	24	6	57	1.58
20219128--20219320	50	3.7	50	77	4	188	24	27	21	25	1.99
20235874--20235970	48	2.0	48	100	0	194	38	26	8	26	1.85
20247118--20247176	20	3.0	20	75	9	66	37	22	30	10	1.87
20251213--20251270	29	2.0	29	100	0	116	13	27	3	55	1.55
20253287--20253724	50	8.6	50	82	1	480	22	28	20	28	1.98
20255989--20256032	23	1.9	23	95	0	79	38	11	25	25	1.89
20261432--20261574	50	2.9	50	92	2	243	25	19	33	21	1.97
20264106--20264363	50	5.2	50	86	0	327	21	32	21	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20264106--20264486	100	3.9	98	77	9	379	21	31	20	25	1.98
20264274--20264455	87	2.1	89	86	3	260	23	30	20	26	1.98
20264363--20264486	50	2.5	50	92	2	198	22	29	20	27	1.99
20264224--20264486	137	1.9	139	89	1	413	22	31	20	25	1.98
20264363--20264530	50	3.3	50	84	6	151	25	27	19	27	1.98
20275187--20275288	53	1.9	53	84	4	134	33	11	23	31	1.91
20275416--20275537	29	4.3	28	78	12	124	29	18	24	27	1.98
20275416--20275566	28	5.4	28	76	12	112	30	17	25	27	1.97
20275416--20275554	29	5.0	27	76	10	95	31	17	25	25	1.97
20284113--20284309	48	4.1	48	80	2	234	21	28	21	28	1.99
20293352--20293379	14	2.0	14	100	0	56	57	0	7	35	1.26
20297900--20298235	169	2.0	170	97	0	638	42	21	11	24	1.85
20299854--20299930	38	2.0	39	94	2	138	19	24	22	33	1.97
20308589--20308613	12	2.1	12	100	0	50	24	40	28	8	1.83
20315161--20315261	51	2.1	51	81	7	120	33	2	8	54	1.47
20315167--20315277	51	2.2	48	78	10	116	31	2	10	54	1.49
20315476--20315711	82	2.9	81	84	6	280	32	13	7	47	1.71
20315817--20315847	12	2.5	13	94	5	55	19	6	25	48	1.72
20315823--20315877	28	1.9	29	85	3	76	29	10	20	40	1.86
20320065--20320208	40	3.6	40	74	11	105	38	19	18	23	1.93
20320238--20320594	41	8.5	40	79	9	313	19	20	26	33	1.97
20320238--20320594	82	4.2	82	78	11	362	19	20	26	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20320352--20320450	52	1.9	52	89	4	155	16	23	27	33	1.95
20320317--20320486	93	1.8	93	89	5	272	18	21	28	31	1.97
20320277--20320533	134	1.9	134	86	6	369	19	21	28	30	1.98
20321061--20321098	14	2.8	13	88	7	58	34	15	23	26	1.95
20324477--20324747	43	6.3	43	90	0	400	21	17	33	27	1.96
20326253--20326522	43	6.3	43	83	4	332	29	31	16	22	1.96
20326253--20326522	85	3.2	86	82	4	350	29	31	16	22	1.96
20331037--20331078	21	2.0	22	95	4	77	23	0	47	28	1.52
20331576--20331607	7	4.9	7	85	14	50	31	53	0	15	1.43
20331576--20331600	12	2.1	12	100	0	50	32	52	0	16	1.44
20331638--20331681	8	5.8	8	81	10	56	38	43	0	18	1.50
20331655--20331702	15	3.3	15	85	8	55	39	41	0	18	1.51
20331711--20331750	15	2.8	14	85	7	53	47	27	0	25	1.52
20333061--20333333	41	6.1	41	76	20	253	32	29	20	17	1.95
20333110--20333298	52	3.8	52	79	18	251	31	30	21	16	1.96
20333071--20333332	93	2.8	93	95	1	463	31	30	20	17	1.96
20333355--20333494	39	3.4	39	68	25	115	22	22	25	30	1.99
20333360--20333536	87	2.0	88	98	1	347	22	22	24	29	1.99
20333464--20333578	40	2.9	39	84	3	140	25	20	20	33	1.97
20336714--20336747	6	5.7	6	100	0	68	0	64	0	35	0.94
20340649--20340692	22	2.0	23	86	4	63	43	9	2	45	1.48
20341582--20341616	17	2.0	18	94	5	63	74	0	0	25	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20346504--20346563	31	2.0	31	83	3	77	45	5	11	38	1.63
20346617--20346754	41	3.4	41	72	11	138	28	22	16	31	1.96
20346593--20346768	82	2.1	82	89	0	262	26	18	19	34	1.95
20347095--20347171	34	2.3	32	82	13	84	25	2	5	66	1.26
20349622--20349673	20	2.8	18	76	21	54	50	3	3	42	1.39
20349589--20349733	68	2.1	71	79	7	154	51	4	4	40	1.43
20353168--20353345	89	2.0	89	91	0	284	23	32	17	25	1.97
20360295--20360364	26	2.7	26	75	0	77	24	20	30	25	1.99
20363682--20363736	5	11.0	5	84	7	76	41	20	0	38	1.52
20376779--20376883	39	2.7	38	86	2	147	38	5	8	47	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163