genome.fa.s4.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  116  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37397960--37397992	8	4.1	8	100	0	66	0	15	24	60	1.35
37402959--37403028	29	2.4	29	92	2	115	35	14	10	40	1.79
37413701--37413736	5	7.2	5	100	0	72	41	19	19	19	1.90
37414547--37414583	9	4.1	9	85	0	56	29	8	13	48	1.71
37414636--37414666	9	3.4	9	90	0	53	38	22	12	25	1.90
37417826--37417923	27	3.6	27	82	5	94	41	18	21	18	1.90
37417876--37417972	27	3.6	27	72	14	92	42	19	22	15	1.89
37421823--37421937	19	6.4	17	68	16	56	22	5	3	68	1.25
37421869--37421938	27	2.6	26	78	14	79	21	4	4	70	1.23
37422886--37422925	19	2.0	19	85	9	53	65	5	0	30	1.14
37436991--37437028	18	2.1	18	85	9	51	15	15	7	60	1.57
37437066--37437148	12	6.8	12	70	8	60	27	14	8	49	1.72
37437075--37437143	24	2.9	23	82	8	68	27	14	10	47	1.76
37438458--37438488	11	2.8	11	95	0	53	25	3	6	64	1.33
37439281--37439354	22	3.3	22	67	29	66	52	2	0	44	1.15
37441460--37441612	39	3.9	39	88	0	216	30	2	21	45	1.66
37441504--37441584	22	3.9	21	65	31	50	29	1	19	49	1.56
37442483--37442549	30	2.2	30	92	7	109	25	8	20	44	1.80
37445911--37446004	42	2.2	42	83	7	111	15	24	15	43	1.86
37445975--37446030	21	2.7	21	85	0	85	12	25	17	44	1.84
37452328--37452400	26	2.8	26	83	6	96	16	26	23	34	1.95
37452321--37452466	26	5.8	25	67	16	61	17	23	23	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37452364--37452504	73	1.9	73	83	8	180	18	24	22	34	1.96
37452339--37452517	73	2.4	73	75	12	177	18	25	21	34	1.96
37452438--37452542	49	2.1	49	80	3	113	18	26	22	32	1.97
37455936--37455979	18	2.6	17	89	10	72	54	6	18	20	1.66
37455936--37455979	17	2.6	18	85	7	65	54	6	18	20	1.66
37457090--37457146	21	2.7	21	72	0	60	17	22	14	45	1.84
37457090--37457183	42	2.2	42	81	3	100	17	21	15	45	1.85
37458580--37458734	39	3.9	39	90	0	229	30	2	21	45	1.65
37459362--37459597	113	2.1	113	95	0	418	26	14	17	41	1.87
37464537--37464624	33	2.7	33	82	3	106	48	18	19	13	1.80
37469509--37469958	4	112.5	4	90	0	506	42	26	6	25	1.79
37470495--37470554	21	3.0	21	82	4	79	43	18	23	15	1.87
37471614--37471641	12	2.3	12	100	0	56	42	21	0	35	1.53
37488469--37488508	15	2.7	15	88	0	62	47	5	0	47	1.24
37489126--37489184	31	2.0	31	86	6	86	32	10	15	42	1.80
37489123--37489204	31	2.7	30	78	15	73	35	13	12	39	1.82
37489376--37489432	29	1.9	30	92	3	98	52	10	3	33	1.53
37489900--37489993	20	4.6	20	71	15	66	37	12	5	44	1.65
37491622--37491653	14	2.3	14	100	0	64	21	12	15	50	1.77
37496102--37496178	36	2.1	36	90	4	120	33	15	20	29	1.94
37496759--37496835	36	2.1	36	86	9	104	35	14	19	31	1.92
37495893--37497508	657	2.5	658	97	0	3000	27	14	21	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37497420--37497491	36	2.0	36	91	5	119	34	16	20	27	1.95
37497420--37497523	36	2.9	36	83	0	109	30	14	23	31	1.94
37497852--37497954	36	3.0	35	77	6	95	29	11	23	35	1.90
37501928--37501996	34	2.0	35	97	2	131	49	17	15	17	1.80
37505668--37505750	1	83.0	1	100	0	166	0	0	0	100	0.00
37519208--37519254	19	2.5	20	82	10	62	63	2	19	14	1.40
37523917--37524363	223	2.0	224	95	0	797	40	23	11	24	1.87
37525191--37525255	30	2.2	29	81	8	76	36	12	6	44	1.67
37525198--37525262	30	2.1	31	85	2	87	36	16	4	41	1.70
37533800--37533837	18	2.1	18	95	0	67	52	10	5	31	1.58
37539317--37539431	58	2.0	58	98	0	221	33	20	11	33	1.89
37540118--37540150	5	6.6	5	92	0	57	39	0	0	60	0.97
37540782--37540891	22	4.6	25	80	13	101	17	23	19	40	1.91
37546182--37546209	14	2.0	14	100	0	56	14	28	14	42	1.84
37553767--37553792	2	13.0	2	100	0	52	50	0	0	50	1.00
37560899--37560934	16	2.2	16	95	0	63	27	0	30	41	1.56
37561170--37561204	18	2.0	17	88	5	52	54	0	0	45	0.99
37561057--37562801	156	11.2	156	99	0	3445	43	3	6	46	1.46
37561326--37561360	18	2.0	17	88	5	52	54	0	0	45	0.99
37561482--37561516	18	2.0	17	88	5	52	54	0	0	45	0.99
37561638--37561672	18	2.0	17	88	5	52	54	0	0	45	0.99
37561794--37561828	18	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37561950--37561984	18	2.0	17	88	5	52	54	0	0	45	0.99
37562106--37562140	18	2.0	17	88	5	52	54	0	0	45	0.99
37562262--37562296	18	2.0	17	88	5	52	54	0	0	45	0.99
37562418--37562452	18	2.0	17	88	5	52	54	0	0	45	0.99
37562574--37562608	18	2.0	17	88	5	52	54	0	0	45	0.99
37562730--37562764	18	2.0	17	88	5	52	54	0	0	45	0.99
37572490--37572633	79	1.9	77	91	4	236	46	14	7	31	1.73
37572850--37572934	17	4.9	18	77	12	72	38	3	1	56	1.24
37572860--37572936	16	4.8	16	82	4	84	38	3	1	55	1.26
37572860--37572930	33	2.2	32	84	2	88	38	4	1	56	1.28
37576208--37576257	24	2.1	24	92	3	84	28	22	16	34	1.95
37591318--37591395	33	2.4	33	78	8	95	26	25	16	30	1.97
37591316--37591532	105	2.1	101	86	5	292	27	26	16	29	1.97
37596707--37596755	20	2.4	21	82	3	64	63	0	2	34	1.06
37597921--37598163	120	2.0	121	98	1	470	45	5	9	38	1.61
37598921--37598983	31	2.0	31	84	6	83	38	14	12	34	1.84
37606210--37606317	54	2.0	54	100	0	216	44	11	14	29	1.80
37607066--37607142	25	3.1	25	100	0	154	63	7	7	20	1.46
37638448--37638497	26	1.9	26	84	8	66	54	2	2	42	1.23
37643166--37643191	5	5.2	5	100	0	52	42	19	19	19	1.90
37643665--37643724	30	2.1	29	81	6	68	43	0	36	20	1.52
37644043--37644073	9	3.4	9	90	0	53	38	22	12	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37647751--37647808	20	2.9	20	80	10	73	8	27	22	41	1.83
37660075--37660164	23	4.1	23	71	11	98	45	6	26	21	1.76
37666496--37666564	34	2.0	34	100	0	138	26	17	23	33	1.96
37672828--37672946	48	2.4	49	81	5	134	52	5	3	39	1.40
37677979--37678180	41	4.9	41	88	1	271	18	22	24	33	1.97
37683327--37683397	8	8.6	8	74	11	54	47	1	2	47	1.25
37684745--37684798	19	2.7	21	75	11	60	61	5	0	33	1.19
37684745--37684798	20	2.8	19	75	11	56	61	5	0	33	1.19
37687127--37687206	31	2.7	30	80	5	90	46	21	7	25	1.77
37687208--37687280	31	2.4	31	83	0	92	36	16	16	30	1.91
37697728--37697808	21	3.9	21	85	0	99	50	16	20	12	1.77
37702898--37702946	25	2.0	25	95	0	89	18	22	16	42	1.88
37705442--37705855	27	15.3	26	85	5	456	44	19	18	18	1.87
37705442--37705855	81	5.1	81	86	1	535	44	19	18	18	1.87
37706030--37706106	26	3.0	26	82	0	100	14	23	24	37	1.92
37706209--37706271	33	1.9	33	86	0	90	20	23	23	31	1.98
37713637--37713693	26	2.2	25	81	9	62	17	26	17	38	1.92
37714639--37715943	649	2.0	650	98	0	2504	25	18	25	30	1.98
37729659--37729706	19	2.6	18	83	9	60	25	20	10	43	1.83
37736992--37737091	42	2.4	42	88	3	139	30	12	29	29	1.92
37738166--37738320	44	3.6	41	72	15	102	29	18	21	30	1.97
37738352--37738601	50	5.0	50	70	6	193	30	23	22	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37738342--37738606	100	2.7	99	86	1	368	30	24	21	24	1.99
37741587--37741671	28	3.0	28	78	10	84	34	17	20	28	1.95
37744820--37744870	27	2.0	27	92	7	88	50	0	5	43	1.26
37745734--37745817	43	2.0	43	90	9	136	16	20	29	33	1.95
37752239--37752396	81	2.0	81	92	2	264	37	25	14	22	1.92
37752520--37752594	27	2.8	27	75	15	82	42	18	17	21	1.89
37756464--37756517	15	3.4	16	78	12	58	62	0	16	20	1.32
37761604--37761642	19	2.1	19	100	0	78	28	20	15	35	1.93
37762913--37762998	37	2.3	37	91	0	136	23	15	22	39	1.91
37763144--37763200	27	2.1	27	83	0	69	35	14	19	31	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163