genome.fa.s4.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  151  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49920775--49920851	11	6.9	11	78	19	72	25	29	1	42	1.63
49921952--49921992	21	2.0	21	90	0	64	43	29	2	24	1.67
49925148--49925718	127	4.5	126	89	2	819	28	23	17	30	1.97
49925150--49925718	252	2.3	251	88	3	849	28	23	17	30	1.97
49930363--49930431	32	2.2	32	100	0	138	27	11	18	42	1.85
49932631--49932667	2	18.5	2	94	0	65	0	54	0	45	1.00
49932616--49932665	10	5.0	10	90	0	55	0	58	2	40	1.10
49936756--49936795	22	1.9	20	85	10	53	10	5	10	75	1.19
49939650--49939745	23	4.2	23	86	5	122	32	25	18	23	1.97
49939650--49939747	46	2.1	46	88	0	142	32	24	19	23	1.97
49943579--49943694	41	2.8	41	85	2	153	18	19	28	32	1.96
49949629--49949709	11	7.4	11	82	9	94	24	34	0	40	1.56
49949700--49949746	23	2.1	23	84	4	60	44	10	4	40	1.59
49949711--49949755	23	2.0	24	91	8	76	42	4	4	48	1.43
49949901--49949966	21	3.3	20	69	26	59	34	3	1	60	1.21
49951186--49951482	126	2.4	126	91	0	488	26	20	19	32	1.97
49952258--49952297	20	2.0	20	95	0	71	32	2	0	65	1.06
49952262--49952305	20	2.2	20	84	8	54	31	2	4	61	1.28
49977037--49977069	5	6.4	5	93	6	57	42	0	0	57	0.98
49977352--49977392	15	2.6	16	81	11	50	58	0	0	41	0.98
49977729--49977793	20	3.2	20	82	6	87	33	9	6	50	1.59
49977729--49977809	20	4.1	20	81	10	78	35	8	7	48	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49977730--49977808	40	2.0	40	82	9	99	36	8	7	46	1.64
49980281--49980307	2	13.5	2	100	0	54	51	0	0	48	1.00
49981248--49981284	19	1.9	19	88	0	56	37	5	0	56	1.22
49983913--49983942	14	2.1	14	100	0	60	20	13	30	36	1.90
49993173--49993222	19	2.6	20	81	9	59	20	6	0	74	1.03
49993269--49993305	3	12.3	3	100	0	74	32	0	0	67	0.91
50006009--50006072	31	2.1	29	85	5	83	40	7	15	35	1.76
50006305--50006378	29	2.6	29	95	4	132	39	12	0	48	1.41
50006417--50006473	27	2.2	26	90	3	87	28	31	24	15	1.96
50008632--50008681	11	4.5	11	82	9	57	62	16	10	12	1.55
50009931--50009975	19	2.5	19	85	7	58	33	2	6	57	1.37
50011603--50011636	17	2.0	17	94	0	59	52	2	0	44	1.16
50012214--50012331	58	2.0	58	100	0	236	38	13	15	32	1.86
50017767--50017803	17	2.2	17	90	4	58	72	5	8	13	1.24
50021785--50021978	96	2.0	96	87	0	280	24	36	15	23	1.94
50026842--50026896	21	2.6	21	85	0	74	29	9	32	29	1.88
50027540--50027572	12	2.8	12	90	4	50	6	18	33	42	1.75
50035601--50035875	136	2.0	136	97	0	523	34	16	22	26	1.95
50036176--50036245	35	2.0	35	97	0	131	34	15	22	27	1.95
50039967--50039991	6	4.2	6	100	0	50	84	0	0	16	0.63
50045828--50045873	13	3.5	13	82	5	56	60	2	0	36	1.09
50045833--50045873	14	3.0	13	86	10	55	65	2	0	31	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50045869--50046234	181	2.0	182	99	0	725	45	12	6	35	1.67
50065100--50065297	98	2.0	99	99	1	389	34	20	13	31	1.91
50072463--50072514	25	2.2	25	89	6	81	36	7	0	55	1.29
50077087--50077422	150	2.2	150	83	3	399	33	19	18	28	1.96
50077297--50077554	132	2.0	132	85	3	349	31	21	17	29	1.96
50088689--50088731	22	1.9	23	85	4	61	41	4	4	48	1.44
50088698--50088763	31	2.1	31	85	0	87	33	1	13	51	1.50
50088715--50088779	31	2.2	29	83	5	76	24	1	18	55	1.51
50093718--50093766	12	4.1	12	86	0	62	53	8	0	38	1.31
50103881--50103932	3	17.3	3	95	0	95	36	0	30	32	1.58
50107046--50107702	331	2.0	331	94	0	1163	35	14	22	27	1.94
50109090--50109132	19	2.3	19	83	0	50	67	0	2	30	1.03
50110229--50110342	49	2.3	50	94	4	198	49	13	7	29	1.70
50115495--50115533	19	2.1	19	85	0	51	51	2	2	43	1.29
50115626--50115670	22	2.0	22	83	8	56	44	0	2	53	1.13
50117447--50119380	964	2.0	964	99	0	3859	36	17	12	33	1.87
50134796--50134878	27	3.1	27	75	3	78	20	24	32	22	1.98
50146146--50146185	15	2.6	15	85	14	55	32	0	0	67	0.91
50146231--50146282	18	2.6	21	76	14	65	32	1	0	65	1.04
50146231--50146283	22	2.7	21	75	22	60	33	1	0	64	1.05
50146681--50146732	21	2.5	19	74	20	50	59	5	0	34	1.21
50150099--50150155	19	2.9	19	86	2	78	33	0	14	52	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50150126--50150178	27	2.0	27	92	0	88	35	0	15	49	1.45
50150106--50150228	46	2.7	47	85	12	175	34	0	13	51	1.47
50150075--50150155	22	4.0	21	85	9	96	32	0	12	55	1.37
50150282--50150386	52	2.0	52	90	0	165	35	0	12	51	1.46
50153223--50153279	6	9.5	6	100	0	114	35	31	33	0	1.58
50156552--50156654	27	3.8	27	90	2	154	21	36	22	19	1.95
50159855--50159913	26	2.3	26	100	0	118	8	25	20	45	1.79
50169430--50169472	23	1.9	23	90	4	70	39	4	13	41	1.66
50174572--50174614	23	1.9	23	90	4	70	39	4	13	41	1.66
50176146--50176187	11	3.7	12	78	9	52	50	2	0	47	1.14
50192920--50193140	110	2.0	111	99	0	435	37	10	9	42	1.74
50195544--50195568	6	4.2	6	100	0	50	16	0	0	84	0.63
50200363--50200408	23	2.0	23	95	0	83	52	10	15	21	1.73
50204350--50204397	25	2.0	24	91	4	78	37	4	14	43	1.65
50208004--50208069	21	3.1	21	68	12	55	15	19	19	45	1.85
50207999--50208120	41	2.9	41	83	7	149	15	21	19	43	1.88
50208043--50208106	21	3.1	21	73	8	60	17	26	18	37	1.93
50209762--50209802	21	2.0	22	90	9	68	34	7	7	51	1.58
50209899--50209931	14	2.4	14	90	10	50	36	0	6	57	1.23
50221837--50221871	19	1.9	19	88	11	56	60	20	5	14	1.54
50222436--50222474	19	2.0	20	90	5	62	38	0	2	58	1.12
50222865--50222902	18	2.2	17	82	13	51	42	13	5	39	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50230304--50230359	19	2.9	19	81	7	51	30	3	8	57	1.47
50230820--50230847	14	2.0	14	100	0	56	7	7	7	78	1.09
50232493--50232531	18	2.2	17	86	4	51	43	2	0	53	1.14
50240106--50240165	1	60.0	1	96	0	93	0	5	0	95	0.29
50240096--50240148	12	4.6	12	81	9	56	0	11	0	88	0.51
50240096--50240179	34	2.4	34	94	4	141	2	10	0	86	0.65
50240111--50240166	29	1.9	29	100	0	112	0	7	0	92	0.37
50240096--50240179	35	2.4	35	92	4	134	2	10	0	86	0.65
50240118--50240179	29	2.1	29	84	0	79	3	9	0	87	0.66
50243322--50243381	30	2.0	31	86	3	86	48	5	18	28	1.69
50246500--50246658	25	6.6	25	83	8	190	36	16	25	21	1.94
50247607--50247632	8	3.2	8	100	0	52	61	0	0	38	0.96
50250245--50250294	16	3.3	16	67	16	52	42	6	26	26	1.78
50250247--50250309	29	2.1	30	94	5	110	39	6	26	26	1.80
50256066--50256196	39	3.1	43	66	22	116	32	25	3	37	1.74
50256025--50256266	81	3.0	81	94	0	412	32	23	5	37	1.79
50280252--50280372	51	2.4	51	91	0	197	33	14	23	28	1.94
50281014--50281056	13	3.3	13	80	0	50	34	25	9	30	1.87
50281346--50281587	123	2.0	120	88	2	358	36	22	9	31	1.87
50281878--50281928	23	2.2	24	93	6	88	31	25	7	35	1.85
50283270--50283301	12	2.6	13	85	14	50	56	6	0	37	1.25
50285127--50285194	33	2.0	34	97	2	129	36	16	8	38	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50285268--50285316	23	2.2	21	82	17	55	65	8	0	26	1.20
50286590--50286653	26	2.5	25	82	7	74	45	3	1	50	1.27
50286612--50286665	26	2.1	26	82	6	65	48	0	1	50	1.11
50292883--50292916	14	2.5	13	90	4	50	79	0	0	20	0.73
50296881--50296913	16	2.1	16	100	0	66	45	6	18	30	1.73
50298468--50298524	30	1.9	30	100	0	114	45	10	10	33	1.73
50299935--50299960	2	13.0	2	100	0	52	50	0	0	50	1.00
50303930--50304034	51	2.0	51	81	5	122	55	6	6	31	1.52
50304302--50304355	12	4.2	13	81	15	51	66	0	1	31	1.02
50304562--50304600	19	2.0	21	85	10	55	69	5	10	15	1.34

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163