genome.fa.s4.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  104  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33647082--33647248	87	1.9	86	85	6	230	31	10	19	38	1.86
33647506--33647573	31	2.2	31	86	0	91	35	4	11	48	1.60
33656124--33656162	19	2.1	19	85	4	53	33	2	7	56	1.41
33668546--33668595	22	2.1	22	85	10	64	52	2	0	46	1.12
33671656--33671703	26	1.9	26	87	8	73	2	22	0	75	0.91
33676838--33676862	2	12.5	2	100	0	50	48	0	0	52	1.00
33677523--33677583	24	2.5	24	82	12	72	39	19	24	16	1.92
33677765--33677835	24	2.9	24	80	2	79	40	19	23	15	1.90
33678180--33678222	21	2.0	21	90	0	68	39	18	0	41	1.51
33684129--33684167	19	1.9	20	85	15	53	41	0	0	58	0.98
33687644--33687702	26	2.2	26	82	11	66	38	1	1	57	1.19
33690744--33690829	43	2.0	43	97	0	163	41	15	13	29	1.85
33694198--33694233	2	18.0	2	100	0	72	0	50	0	50	1.00
33694446--33694483	18	2.1	19	85	5	51	44	0	10	44	1.38
33698024--33698219	104	1.9	104	88	2	295	35	9	20	33	1.86
33698411--33698454	22	1.9	24	81	9	56	40	11	2	45	1.53
33700934--33701070	63	2.2	63	82	0	157	27	5	30	35	1.81
33702866--33702892	14	1.9	14	100	0	54	40	0	29	29	1.57
33704259--33704304	22	2.2	20	88	7	65	63	0	2	34	1.07
33704225--33704314	21	4.6	20	77	12	71	55	1	2	41	1.19
33704259--33704311	22	2.4	22	84	9	63	60	0	1	37	1.08
33704270--33704316	19	2.3	21	85	7	62	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33704372--33704460	46	1.9	47	84	6	119	61	3	3	31	1.28
33707039--33707092	21	2.5	22	79	8	58	59	3	0	37	1.15
33707258--33707349	3	30.7	3	81	8	107	65	2	3	29	1.20
33710310--33710368	21	2.8	20	77	7	64	16	23	16	42	1.89
33710311--33710440	42	3.1	42	80	2	127	15	23	17	43	1.87
33710384--33710466	40	2.0	42	83	4	107	15	24	18	42	1.89
33711269--33711302	17	2.0	17	100	0	68	47	0	17	35	1.48
33713391--33713438	22	2.1	23	85	11	64	37	0	4	58	1.18
33714818--33714849	16	1.9	17	93	6	57	43	3	3	50	1.33
33714943--33714967	13	1.9	13	100	0	50	36	0	0	64	0.94
33715790--33715847	25	2.3	24	77	11	62	25	1	15	56	1.49
33716347--33716412	24	2.8	24	76	17	57	33	1	3	62	1.20
33719561--33719600	20	1.9	22	90	10	66	57	0	12	30	1.36
33729566--33729598	14	2.3	15	94	5	59	30	0	33	36	1.58
33729694--33729731	13	2.8	13	81	18	51	13	0	47	39	1.42
33729644--33729782	74	1.9	75	90	4	228	29	0	25	44	1.54
33729773--33729837	7	9.3	7	77	0	67	16	0	47	35	1.47
33729776--33729852	21	3.7	21	74	6	57	20	0	44	35	1.52
33732129--33732270	40	3.6	41	80	6	125	32	7	13	46	1.71
33733420--33733695	43	6.5	43	87	1	376	25	17	29	27	1.97
33733413--33733695	85	3.3	86	86	2	374	25	17	29	27	1.97
33733420--33733695	128	2.2	129	87	1	385	25	17	29	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33736935--33740031	773	4.0	772	91	1	4876	31	19	17	31	1.95
33740595--33740642	25	2.0	23	92	8	78	35	0	2	62	1.07
33741715--33741748	16	2.1	16	94	0	59	47	5	2	44	1.42
33743555--33743778	106	2.1	107	96	2	425	42	5	9	42	1.60
33743776--33743808	17	1.9	17	88	11	50	75	3	0	21	0.93
33772503--33772532	15	2.0	15	93	0	51	76	0	0	23	0.78
33773066--33773099	18	1.9	18	88	5	52	29	0	5	64	1.17
33773402--33773472	19	3.8	18	73	15	54	11	8	9	70	1.34
33773402--33773445	21	2.1	21	87	8	63	11	2	11	75	1.15
33773401--33773446	24	2.0	23	83	12	58	10	2	13	73	1.17
33774750--33774810	29	2.1	28	81	3	68	26	13	16	44	1.84
33775043--33775093	22	2.3	22	100	0	102	27	33	0	39	1.57
33777088--33777143	24	2.3	24	87	0	85	42	32	23	1	1.64
33777347--33777437	29	3.0	29	78	18	103	47	27	1	24	1.59
33777373--33777437	29	2.2	30	91	8	116	47	29	0	23	1.52
33780481--33780819	125	2.7	126	95	0	599	33	22	14	30	1.93
33780956--33781016	29	2.1	28	81	3	68	45	16	13	24	1.83
33781818--33781890	29	2.6	27	74	16	67	35	13	4	46	1.63
33792100--33792386	148	1.9	148	100	0	574	41	19	12	26	1.87
33793463--33793550	22	4.0	22	79	2	97	34	19	26	20	1.96
33803835--33803893	9	6.4	9	79	11	66	40	25	10	23	1.86
33803966--33804054	39	2.3	39	84	2	124	17	3	29	49	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33804033--33804062	13	2.3	13	100	0	60	16	0	43	40	1.48
33807623--33807684	28	2.2	28	94	0	106	30	3	37	29	1.73
33807750--33807822	37	2.0	37	91	5	121	24	15	24	35	1.94
33811622--33811647	11	2.4	11	100	0	52	53	0	7	38	1.30
33811595--33811716	40	2.9	41	90	6	183	62	0	3	34	1.12
33811672--33811742	30	2.4	31	78	7	83	64	0	2	32	1.08
33813346--33813423	25	3.3	23	83	11	88	56	0	2	41	1.13
33813363--33813423	25	2.4	25	94	0	104	57	0	3	39	1.15
33814669--33814695	14	1.9	14	100	0	54	33	7	7	51	1.58
33816373--33816416	18	2.2	20	84	11	56	45	0	6	47	1.29
33817328--33817390	31	2.0	31	90	6	101	61	0	0	38	0.96
33817328--33817379	11	4.9	11	79	11	56	59	0	0	40	0.97
33819137--33819176	19	2.1	19	100	0	80	50	10	5	35	1.58
33826376--33826510	21	6.4	21	80	5	80	18	40	14	26	1.90
33826398--33826542	63	2.3	63	80	2	157	20	37	15	26	1.92
33826385--33826521	42	3.3	42	83	2	159	19	37	15	27	1.92
33826586--33826644	21	2.8	21	89	0	73	28	38	10	22	1.86
33826610--33826671	21	3.0	21	90	4	90	25	41	9	22	1.84
33826640--33826699	21	2.9	21	84	0	75	23	48	8	20	1.76
33826667--33826889	21	10.6	21	86	2	209	20	46	8	25	1.78
33826703--33826888	63	3.0	63	82	0	237	20	45	7	26	1.77
33826892--33826958	21	3.2	21	78	0	71	31	38	8	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33828319--33828352	17	2.1	16	88	5	50	11	11	0	76	1.02
33830703--33830727	13	1.9	13	100	0	50	24	8	28	40	1.83
33833103--33833150	18	2.7	18	100	0	96	37	12	14	35	1.84
33834165--33834193	12	2.4	12	100	0	58	41	6	6	44	1.58
33836534--33836590	29	2.0	29	96	0	105	35	14	40	10	1.80
33842831--33842959	46	2.8	46	97	0	240	27	29	8	34	1.87
33843450--33843511	32	1.9	32	86	0	88	32	14	9	43	1.78
33844217--33844252	17	2.1	17	94	0	63	50	16	2	30	1.60
33844919--33844960	10	4.6	9	80	14	50	69	2	0	28	1.01
33846575--33846610	3	12.0	3	100	0	72	33	0	0	66	0.92
33847467--33847651	43	4.3	43	87	0	244	20	27	19	32	1.97
33848012--33848061	21	2.4	21	96	0	91	0	48	18	34	1.48
33849518--33849587	21	3.5	21	78	9	74	35	40	2	21	1.68
33850356--33850394	7	5.4	7	81	6	51	43	43	0	12	1.42
33850356--33850398	15	2.9	15	86	3	61	39	46	0	13	1.44
33850674--33850902	113	2.0	113	83	3	291	25	27	22	24	2.00
33850799--33851042	73	3.3	73	86	2	321	24	25	23	27	2.00
33850828--33851035	74	2.8	73	88	1	308	25	24	22	28	1.99
33852885--33853097	63	3.4	63	93	2	340	27	20	27	25	1.99
33852887--33853153	63	4.2	63	87	3	245	26	20	27	25	1.99
33855390--33855431	21	2.0	22	85	4	59	33	16	9	40	1.81
33858223--33858267	23	2.0	22	95	4	81	77	0	22	0	0.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33858231--33858263	10	3.7	9	88	11	50	78	0	21	0	0.75
33858407--33858608	104	2.0	102	93	5	345	38	0	19	41	1.58
33865160--33865212	24	2.2	24	90	6	81	16	22	16	43	1.88
33867616--33867670	18	3.1	17	79	7	65	43	0	21	34	1.53
33867760--33867896	38	3.6	38	79	6	125	24	19	25	30	1.98
33869373--33869462	38	2.4	38	96	0	162	31	38	11	18	1.86
33872630--33872661	2	16.0	2	100	0	64	50	0	0	50	1.00
33875207--33875245	18	2.1	19	90	4	62	64	0	5	30	1.15
33875212--33875254	18	2.5	17	85	14	54	60	0	4	34	1.17
33875217--33875254	17	2.2	18	85	4	51	63	0	5	31	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163