genome.fa.s4.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  98  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31606873--31606931	31	1.9	30	86	3	82	54	3	5	37	1.39
31617052--31617095	23	2.0	23	86	13	65	0	15	6	77	0.97
31617790--31617823	18	1.9	17	88	5	50	35	5	2	55	1.39
31617827--31617965	24	6.0	23	75	12	106	38	7	3	50	1.49
31617840--31617941	45	2.2	46	81	6	118	41	6	1	50	1.40
31617985--31618013	14	2.0	15	93	6	51	27	3	6	62	1.37
31624363--31624407	22	2.0	22	95	0	81	17	11	28	42	1.84
31624597--31624698	13	7.8	13	71	2	69	36	4	21	37	1.75
31624597--31624687	26	3.5	26	80	5	85	37	4	21	36	1.74
31624619--31624687	27	2.6	26	82	8	77	42	2	21	33	1.68
31624632--31624716	40	2.1	40	84	0	107	47	5	17	29	1.71
31624651--31624727	40	1.9	40	83	0	100	48	7	15	28	1.73
31624746--31624779	12	2.7	13	90	4	52	38	0	17	44	1.49
31626254--31626573	46	6.9	47	90	2	529	38	13	18	29	1.89
31626254--31626573	93	3.4	93	98	0	613	38	13	18	29	1.89
31626677--31626701	13	1.9	13	100	0	50	8	0	24	68	1.16
31633011--31633299	143	2.0	142	90	4	456	22	25	19	32	1.97
31637837--31638157	46	6.9	47	92	1	506	38	14	18	28	1.89
31637837--31638157	93	3.5	94	91	1	515	38	14	18	28	1.89
31637837--31638157	139	2.3	140	93	1	538	38	14	18	28	1.89
31652456--31652483	11	2.5	11	100	0	56	21	0	17	60	1.36
31655702--31655746	10	4.5	10	91	0	63	53	4	33	8	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31657602--31657666	28	2.3	28	81	0	76	38	9	18	33	1.83
31660981--31661013	12	2.8	12	90	4	50	12	3	9	75	1.14
31662368--31662428	26	2.3	27	78	13	65	63	6	0	29	1.19
31664203--31664377	67	2.6	68	83	3	221	32	16	26	24	1.96
31664410--31664522	27	4.2	27	69	15	65	38	12	24	24	1.90
31664420--31664522	54	1.9	54	85	0	143	40	11	25	22	1.87
31664421--31664550	54	2.4	53	79	7	127	41	13	22	23	1.88
31678194--31678270	33	2.3	32	80	10	84	28	24	18	28	1.98
31678331--31678408	35	2.3	34	80	8	79	28	21	15	34	1.94
31685290--31685341	26	2.0	27	84	3	70	36	19	0	44	1.51
31699522--31699954	44	9.9	44	84	1	528	28	20	26	24	1.99
31715954--31715998	22	2.1	21	84	12	56	8	8	15	66	1.43
31721913--31722032	58	2.1	59	98	1	233	45	6	8	40	1.61
31729542--31729700	78	2.0	78	84	4	205	20	16	27	35	1.94
31729542--31729700	26	6.1	26	81	4	169	20	16	27	35	1.94
31737796--31738479	89	7.7	89	94	2	1148	30	9	24	36	1.87
31738648--31738682	17	1.9	19	88	11	56	20	2	11	65	1.37
31740982--31741033	24	2.2	24	82	0	59	40	1	1	55	1.22
31741944--31742000	26	2.2	25	79	17	64	56	3	0	40	1.17
31742037--31742122	22	3.9	21	76	15	75	44	5	13	36	1.69
31745056--31745111	21	2.7	21	81	13	62	26	7	12	53	1.64
31750329--31750506	39	4.7	38	84	6	220	32	22	16	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31752262--31752367	46	2.3	46	78	12	119	47	20	13	18	1.82
31754802--31754867	33	2.0	33	90	0	105	15	25	22	36	1.93
31764731--31764771	17	2.3	19	87	8	59	68	12	4	14	1.36
31774518--31774545	6	4.7	6	100	0	56	14	0	0	85	0.59
31788584--31788729	21	7.0	21	86	1	188	45	17	21	15	1.86
31788875--31789030	21	7.4	21	76	5	118	44	14	22	18	1.86
31788872--31788994	42	2.9	42	85	0	156	44	11	21	21	1.84
31788867--31789025	63	2.5	62	79	11	187	45	13	21	18	1.84
31788867--31789043	21	8.4	21	74	7	101	46	14	20	18	1.84
31788603--31789172	311	1.8	311	90	2	912	40	18	17	23	1.91
31790043--31790218	44	4.0	44	100	0	352	43	11	13	31	1.80
31790396--31790488	30	3.1	30	85	0	132	35	24	15	24	1.94
31792631--31792668	14	2.7	15	88	8	53	39	2	15	42	1.61
31798635--31798660	13	2.0	13	100	0	52	23	30	0	46	1.53
31798947--31798976	15	2.0	15	93	0	51	40	23	16	20	1.91
31803181--31803217	18	2.1	18	100	0	74	27	10	16	45	1.80
31806226--31806264	19	2.1	19	100	0	78	35	5	20	38	1.75
31806231--31806272	19	2.2	19	91	0	66	38	7	23	30	1.82
31808640--31808715	21	3.7	21	87	7	120	38	10	9	42	1.71
31810444--31810478	18	1.9	18	94	0	61	37	0	22	40	1.55
31818698--31818738	21	1.9	22	90	5	66	24	4	4	65	1.32
31821198--31821383	50	3.7	50	75	11	193	25	17	26	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31821307--31821381	25	3.1	25	66	21	68	22	16	30	30	1.95
31821196--31821381	48	3.8	48	78	12	198	25	17	27	30	1.97
31821204--31821384	99	1.8	99	90	7	294	25	17	25	30	1.97
31821603--31821634	16	2.0	16	93	0	55	59	0	15	25	1.36
31827781--31827813	17	2.0	17	88	5	50	48	0	0	51	1.00
31830016--31830179	87	1.9	86	83	3	213	25	13	21	39	1.90
31832552--31832599	13	3.7	13	76	18	55	60	0	6	33	1.22
31832567--31832610	17	2.6	18	86	13	58	65	0	6	27	1.17
31832556--31832609	22	2.5	21	80	14	56	62	0	5	31	1.18
31849492--31849713	115	1.9	115	94	0	390	22	22	22	31	1.98
31854690--31854759	19	3.5	19	69	17	61	31	2	0	65	1.07
31856053--31856122	19	3.5	19	69	17	61	31	2	0	65	1.07
31857741--31857848	29	3.7	29	68	16	87	40	1	0	56	1.16
31866142--31866173	15	2.2	15	94	5	57	31	3	0	65	1.08
31866682--31866745	13	4.9	13	82	0	83	37	20	6	35	1.78
31874900--31874950	19	2.6	19	76	14	59	45	0	11	43	1.40
31875306--31875361	23	2.6	21	77	11	60	58	0	0	41	0.98
31876853--31876891	14	2.8	14	80	0	51	46	25	0	28	1.53
31895289--31895360	36	2.0	36	97	0	135	19	26	11	43	1.84
31897372--31897417	13	2.8	18	69	30	57	52	13	6	28	1.65
31897408--31897438	16	1.9	16	100	0	62	45	19	9	25	1.81
31907342--31907390	21	2.4	21	86	10	66	42	6	28	22	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31908857--31908885	14	2.1	14	93	6	51	41	0	20	37	1.53
31909557--31909592	12	2.7	14	87	12	58	47	0	13	38	1.44
31911178--31911225	24	2.0	24	100	0	96	16	25	25	33	1.96
31911257--31911304	21	2.3	21	92	0	78	16	27	16	39	1.90
31913840--31913870	13	2.3	14	94	5	55	67	0	6	25	1.14
31915086--31915118	17	1.9	17	93	0	57	9	24	48	18	1.76
31928340--31928378	15	2.6	15	80	15	53	58	7	7	25	1.52
31929153--31929193	20	2.0	22	85	9	59	70	4	9	14	1.30
31929356--31929413	22	2.6	22	84	7	73	44	17	3	34	1.65
31929392--31929466	19	3.8	19	87	6	114	37	16	9	37	1.80
31929866--31930103	133	1.8	129	82	10	304	28	23	20	27	1.99
31930085--31930706	44	14.5	40	70	15	196	28	23	20	27	1.99
31929995--31930706	173	4.1	172	80	7	766	28	23	19	27	1.98
31930076--31930706	129	4.9	129	76	10	579	28	23	19	28	1.99
31929990--31930710	346	2.1	346	83	5	888	28	23	19	27	1.99
31930169--31930706	217	2.5	216	84	6	637	28	23	20	28	1.99
31932100--31932127	6	4.7	6	100	0	56	0	14	0	85	0.59
31932110--31932161	22	2.5	20	81	9	61	3	17	0	78	0.89
31936454--31936512	29	2.0	30	83	3	75	47	3	10	38	1.54
31936557--31936597	19	2.2	18	87	12	57	60	0	0	39	0.96
31936566--31936603	18	2.1	19	85	5	51	65	0	0	34	0.93
31937110--31937149	19	2.0	22	85	14	59	70	5	10	15	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31937311--31937368	22	2.6	22	81	7	64	43	17	5	34	1.71
31937324--31937421	19	4.8	19	80	9	88	38	15	9	36	1.79
31937358--31937420	21	3.1	20	81	9	83	39	12	9	38	1.76
31938625--31938671	20	2.4	20	82	13	62	12	23	0	63	1.28
31939308--31939352	21	2.1	21	87	0	63	20	35	13	31	1.91
31940737--31940911	72	2.5	71	83	3	235	54	13	6	25	1.63
31941340--31941379	18	2.2	18	90	0	62	42	5	10	42	1.60
31943341--31943553	109	1.9	115	83	9	289	43	16	8	30	1.79
31946571--31946600	15	1.9	16	93	6	53	40	3	3	53	1.34
31956910--31956979	31	2.3	31	75	9	79	45	11	8	34	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163