genome.fa.s4.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  142  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46627359--46627397	18	2.2	17	86	13	53	46	20	0	33	1.51
46627783--46627971	99	1.9	98	97	1	360	34	20	7	36	1.82
46630123--46630246	54	2.3	54	79	5	135	25	22	27	25	2.00
46635327--46635440	61	1.9	58	85	8	158	50	5	2	42	1.39
46635482--46635525	18	2.6	17	78	7	54	45	0	4	50	1.22
46636710--46636964	108	2.4	107	84	9	331	32	20	18	27	1.96
46637526--46637590	22	2.9	22	75	9	60	75	4	4	15	1.13
46639718--46639747	4	7.5	4	92	0	51	23	3	0	73	0.98
46644205--46644263	20	2.8	20	78	14	66	44	1	6	47	1.39
46644205--46644266	22	2.9	22	76	13	67	43	1	6	48	1.38
46651867--46651958	27	3.4	27	90	0	148	25	9	25	40	1.86
46651867--46651958	9	10.2	9	85	4	123	25	9	25	40	1.86
46673471--46673535	32	2.0	33	96	3	123	16	24	9	49	1.75
46673748--46673779	11	2.8	12	90	9	57	68	0	0	31	0.90
46676411--46676459	23	2.1	23	100	0	98	40	12	12	34	1.80
46679903--46679943	19	2.0	21	86	9	59	12	26	17	43	1.84
46680825--46681046	123	1.8	121	84	3	302	41	12	18	27	1.86
46682956--46683318	126	2.9	126	89	3	541	39	15	17	28	1.90
46686320--46686373	23	2.4	23	78	12	58	64	5	0	29	1.16
46688787--46690054	638	2.0	638	100	0	2536	27	19	20	31	1.97
46691015--46691065	24	2.1	24	82	7	59	66	3	3	25	1.26
46691227--46691266	11	3.6	11	86	6	55	52	0	25	22	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46696721--46696749	5	6.0	5	92	8	51	20	0	58	20	1.39
46699532--46699556	9	2.8	9	100	0	50	88	0	0	12	0.53
46699700--46699730	5	6.2	5	100	0	62	80	0	19	0	0.71
46701474--46701508	3	11.7	3	100	0	70	68	0	0	31	0.90
46705843--46705904	19	3.4	18	78	14	65	46	0	27	25	1.53
46706856--46706918	21	3.2	21	62	25	55	38	6	11	44	1.66
46706854--46706937	38	2.2	38	97	0	159	36	5	9	47	1.61
46709718--46709785	16	4.2	16	86	0	91	41	2	30	25	1.70
46709716--46709778	32	2.0	32	93	0	108	42	1	30	25	1.64
46709767--46709859	44	2.1	46	91	4	154	29	4	31	35	1.77
46709896--46709931	15	2.5	15	95	4	65	36	25	13	25	1.93
46710131--46710228	49	2.0	49	88	4	144	48	11	7	32	1.66
46713813--46713868	28	2.0	28	96	0	103	23	3	41	32	1.71
46720686--46720718	16	2.1	16	94	0	57	39	6	33	21	1.78
46720932--46720973	15	2.7	16	82	14	52	52	2	0	45	1.13
46720941--46720982	15	2.9	15	82	10	52	52	0	0	47	1.00
46721148--46721195	26	1.9	25	84	16	64	52	2	0	45	1.12
46721103--46721331	92	2.5	92	83	8	236	47	3	3	44	1.38
46724066--46724132	30	2.2	30	100	0	134	56	19	14	8	1.64
46728335--46728389	3	18.3	3	92	0	92	61	0	38	0	0.96
46741135--46741397	19	13.8	19	81	0	328	41	9	11	37	1.74
46741142--46741397	38	6.7	38	99	0	494	41	9	10	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46744081--46744120	20	2.0	20	85	0	53	45	5	2	47	1.38
46748514--46748657	54	2.7	54	84	1	173	35	25	21	18	1.95
46748532--46748678	27	5.4	27	77	2	134	34	23	21	20	1.97
46748552--46748678	54	2.4	54	83	0	155	35	22	21	20	1.96
46752811--46752860	26	1.9	26	87	0	73	22	24	30	24	1.99
46756166--46756254	43	2.0	44	97	2	171	56	13	7	22	1.63
46758763--46759067	114	2.7	113	84	5	393	26	23	24	24	2.00
46760522--46760957	146	3.0	146	95	1	755	43	12	16	27	1.85
46764352--46764483	23	5.8	23	72	15	103	29	7	24	38	1.83
46765557--46765743	43	4.4	43	89	2	252	23	18	32	25	1.97
46765536--46765743	85	2.4	86	84	4	269	22	17	32	27	1.96
46768221--46768263	13	3.3	13	83	6	52	0	20	4	74	1.00
46768933--46768967	3	11.7	3	100	0	70	0	31	0	68	0.90
46768934--46768979	12	3.8	12	91	0	56	0	32	4	63	1.14
46786075--46786113	14	2.9	14	82	17	55	25	0	20	53	1.45
46798277--46798319	21	1.9	24	86	13	65	16	0	11	72	1.13
46804601--46804648	18	2.6	18	80	3	51	60	8	4	27	1.44
46804829--46804889	17	3.7	16	80	4	59	29	1	0	68	0.99
46804831--46804869	16	2.4	17	86	4	53	33	0	0	66	0.92
46813802--46813985	50	3.7	50	85	2	244	26	20	29	23	1.99
46813804--46813985	101	1.8	100	86	3	267	25	20	30	23	1.99
46814235--46814273	12	3.2	12	85	0	51	51	5	23	20	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46815116--46815327	104	2.0	105	99	0	417	28	21	18	30	1.97
46815318--46815367	19	2.7	19	84	9	59	38	0	0	62	0.96
46816741--46816803	31	2.0	31	96	0	117	38	14	19	28	1.90
46817845--46819308	732	2.0	732	100	0	2928	32	11	21	34	1.89
46819847--46820031	92	2.0	93	96	1	345	45	8	21	25	1.79
46820153--46820204	15	3.5	15	77	17	54	73	1	21	3	1.10
46820180--46820243	18	3.6	17	77	10	58	70	7	20	1	1.21
46821106--46821241	40	3.5	39	77	10	152	25	16	25	33	1.96
46828041--46828065	6	4.2	6	100	0	50	68	0	0	32	0.90
46828113--46828171	29	2.0	30	93	3	102	52	15	3	28	1.58
46828117--46828192	29	2.5	29	85	6	89	47	15	5	31	1.68
46829417--46829450	10	3.3	10	92	8	59	52	0	0	47	1.00
46829417--46829449	11	3.1	11	95	4	59	54	0	0	45	0.99
46844115--46844154	14	2.8	14	88	11	55	40	0	5	55	1.22
46848693--46849306	306	2.0	307	99	0	1221	35	16	15	32	1.90
46850481--46850538	21	2.8	22	79	10	68	63	1	0	34	1.04
46851358--46851410	20	2.7	21	75	18	51	22	7	7	62	1.47
46858173--46858211	2	20.5	2	84	10	55	53	0	0	46	1.00
46859302--46859353	21	2.4	22	83	6	61	65	3	0	30	1.10
46863192--46863700	30	15.3	31	66	23	150	39	4	3	52	1.38
46863157--46863682	102	5.2	102	100	0	1052	39	3	3	53	1.38
46869744--46869787	21	2.1	21	91	0	70	29	20	22	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46876898--46876946	24	2.0	24	92	0	80	30	24	12	32	1.92
46889405--46889454	22	2.3	22	82	6	57	30	6	4	60	1.39
46894423--46894467	19	2.3	19	88	3	72	82	0	8	8	0.85
46895663--46895885	44	5.1	44	65	10	159	27	30	23	17	1.97
46895658--46896125	88	5.3	88	88	2	620	27	27	24	20	1.99
46896235--46896485	43	5.8	43	71	5	191	27	23	24	24	2.00
46896187--46896530	87	4.0	88	89	2	518	28	22	24	24	1.99
46896193--46896508	44	7.2	44	70	5	246	28	22	23	25	1.99
46897881--46898131	43	5.8	43	72	5	191	28	21	24	24	1.99
46897833--46898176	87	4.0	87	90	0	510	29	21	24	25	1.99
46897839--46898154	44	7.2	44	72	5	264	29	21	23	25	1.99
46905748--46905820	38	2.0	37	92	7	123	35	20	24	19	1.95
46908533--46908561	2	14.5	2	100	0	58	48	0	51	0	1.00
46909599--46909640	19	2.2	19	100	0	84	50	0	9	40	1.35
46909765--46909899	68	2.0	68	98	0	261	28	17	17	37	1.92
46924758--46924792	19	1.9	17	88	11	52	65	11	2	20	1.37
46939872--46939903	2	16.0	2	100	0	64	0	50	0	50	1.00
46960084--46960360	136	2.0	137	99	0	547	40	4	11	44	1.61
46972494--46972587	19	4.8	19	84	5	125	40	8	15	35	1.78
46972507--46972557	21	2.5	21	87	6	70	41	9	15	33	1.80
46972495--46972594	40	2.6	40	85	6	136	41	8	15	36	1.76
47010009--47010414	115	3.5	115	82	3	428	33	18	21	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47011861--47011902	15	2.7	16	81	7	50	14	47	2	35	1.57
47012855--47012906	20	2.5	21	78	12	54	26	9	17	46	1.79
47013398--47013430	15	2.2	15	94	0	57	39	3	3	54	1.31
47013575--47013607	15	2.2	15	94	0	57	39	3	3	54	1.31
47013316--47014277	177	5.4	177	99	0	1915	41	5	5	47	1.49
47013752--47013784	15	2.2	15	94	0	57	39	3	3	54	1.31
47013929--47013961	15	2.2	15	94	0	57	39	3	3	54	1.31
47014106--47014138	15	2.2	15	94	0	57	39	3	3	54	1.31
47021574--47021605	15	2.1	15	94	0	55	12	59	18	9	1.59
47027540--47027575	18	2.0	18	89	10	56	63	0	0	36	0.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163