genome.fa.s4.2.7.7.80.10.50.1000.92.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  92  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29574526--29574565	21	1.9	21	89	0	62	35	32	0	32	1.58
29581300--29581340	22	1.9	21	85	5	55	51	2	4	41	1.36
29582473--29582521	18	2.7	18	87	0	71	38	22	10	28	1.87
29582464--29582521	9	6.4	9	80	7	64	41	22	8	27	1.83
29582464--29582521	27	2.1	27	87	6	82	41	22	8	27	1.83
29582529--29582591	17	3.5	17	69	12	54	49	12	3	34	1.57
29582520--29582594	37	2.0	37	94	0	132	45	14	4	36	1.64
29582723--29582814	39	2.4	39	92	3	152	20	3	25	51	1.63
29582829--29582905	13	5.9	13	78	6	75	38	6	19	35	1.78
29585282--29585347	18	3.7	18	93	0	105	37	13	15	33	1.86
29588539--29588585	20	2.6	17	78	18	58	44	31	23	0	1.54
29588949--29588980	13	2.5	13	95	5	57	12	0	43	43	1.42
29604982--29605176	107	1.8	106	85	3	275	34	18	15	30	1.92
29605318--29605455	73	1.9	73	93	0	240	34	17	19	28	1.94
29605802--29605893	45	2.0	47	85	8	127	57	0	7	34	1.27
29606694--29606721	6	4.7	6	100	0	56	67	0	14	17	1.22
29607581--29607713	44	3.0	45	80	7	139	27	23	18	30	1.98
29607536--29608014	45	10.5	44	69	15	199	27	20	19	32	1.97
29608148--29608747	44	13.9	43	68	13	286	26	20	22	31	1.98
29608221--29608603	85	4.5	85	73	10	339	25	20	22	31	1.98
29608314--29608732	85	4.9	84	72	11	285	25	21	23	29	1.99
29608131--29608728	129	4.6	129	91	0	930	26	20	22	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29609123--29609179	22	2.5	23	82	8	71	28	26	10	35	1.89
29610113--29610151	20	1.9	21	94	5	71	2	15	2	79	0.95
29613853--29614047	107	1.8	106	87	3	293	33	19	16	30	1.94
29614187--29614341	73	2.1	73	83	2	222	32	16	20	30	1.94
29614680--29614769	10	9.6	10	72	17	50	58	0	5	35	1.21
29617577--29617616	20	2.0	20	90	0	62	50	10	10	30	1.69
29617565--29617631	34	1.9	35	87	3	100	46	11	8	32	1.72
29618999--29619054	28	2.0	27	82	3	67	28	1	3	66	1.19
29639336--29639397	26	2.3	27	83	5	72	64	4	4	25	1.34
29640434--29640483	15	3.3	15	76	17	50	24	2	2	72	1.06
29640594--29640635	22	1.9	22	90	9	68	14	4	2	78	1.01
29642052--29642093	15	2.5	17	77	18	52	16	16	28	38	1.91
29642222--29642262	21	1.9	22	85	5	57	12	4	12	70	1.31
29658446--29658620	51	3.6	51	85	9	247	33	14	22	29	1.94
29658511--29658616	44	2.4	44	90	0	167	33	14	23	29	1.94
29662743--29662784	18	2.4	18	88	4	59	71	7	4	16	1.26
29662934--29662984	3	17.0	3	100	0	102	66	0	0	33	0.92
29665102--29665178	29	2.6	29	83	4	91	48	14	11	25	1.78
29665503--29665546	21	2.1	22	83	8	56	31	6	2	59	1.36
29666056--29666102	24	2.0	24	83	8	60	48	0	0	51	1.00
29666003--29666113	49	2.2	50	79	11	127	45	1	0	52	1.11
29666611--29666645	15	2.4	15	90	4	54	48	0	8	42	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29670556--29670626	12	6.3	11	82	11	81	18	4	0	77	0.93
29670554--29670626	17	3.9	18	77	19	71	19	4	0	76	0.94
29672241--29672275	15	2.4	15	90	4	54	48	0	8	42	1.33
29672241--29672299	29	2.0	29	83	6	75	44	0	10	45	1.37
29673715--29673780	27	2.4	29	77	10	75	66	12	0	21	1.23
29675419--29675456	2	19.0	2	89	10	60	50	2	47	0	1.15
29676089--29676139	26	2.0	25	85	11	68	15	3	39	41	1.66
29685478--29685517	3	13.7	3	94	5	73	67	0	0	32	0.91
29685501--29685570	36	1.9	37	91	2	115	61	7	8	22	1.49
29685492--29685577	36	2.4	36	78	1	111	61	5	6	25	1.44
29695166--29695202	18	2.1	18	89	0	56	27	8	13	51	1.69
29695911--29695955	23	2.0	23	86	0	63	68	6	4	20	1.29
29696619--29696660	21	2.1	19	86	8	57	66	0	2	30	1.04
29696633--29696665	17	1.9	17	88	11	50	66	0	3	30	1.06
29699260--29699308	19	2.5	20	83	12	66	75	0	2	22	0.90
29704690--29704850	79	2.0	79	96	0	295	26	10	25	37	1.88
29706417--29706464	22	2.3	21	80	16	55	2	33	2	62	1.18
29707392--29707422	5	6.2	5	100	0	62	41	19	19	19	1.90
29708250--29708286	9	4.1	9	92	0	65	29	10	13	45	1.77
29708635--29708689	18	2.8	20	75	22	62	32	0	0	67	0.91
29708828--29708867	20	2.0	20	85	0	53	67	0	5	27	1.11
29715364--29715404	21	2.0	21	85	0	55	31	0	24	43	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29715761--29715873	24	4.6	25	74	9	99	22	25	16	35	1.95
29715769--29715873	49	2.1	49	100	0	210	21	24	17	36	1.95
29715769--29715900	49	2.7	49	91	2	194	20	25	18	35	1.95
29715769--29715956	25	7.5	25	72	9	96	22	25	19	32	1.97
29715960--29716046	25	3.5	25	73	17	74	22	25	19	32	1.98
29723555--29723611	25	2.3	25	84	0	69	17	24	21	36	1.94
29736887--29736951	35	1.9	33	87	6	94	24	20	6	49	1.71
29752848--29752901	23	2.3	23	87	6	83	37	11	22	29	1.89
29752848--29752981	23	5.9	23	73	13	80	38	13	17	31	1.88
29765227--29765260	5	6.8	5	100	0	68	20	17	20	41	1.91
29766130--29766358	114	2.0	115	99	0	451	41	4	6	47	1.48
29771823--29771867	15	3.1	15	96	3	83	13	13	33	40	1.83
29772926--29772968	4	10.8	4	100	0	86	23	0	25	51	1.49
29773574--29773681	25	4.3	26	70	8	89	22	10	31	36	1.87
29773505--29773666	50	3.2	50	82	0	198	22	12	29	35	1.91
29773576--29773681	50	2.1	50	83	0	131	22	10	32	34	1.88
29775254--29775430	39	4.5	39	81	0	183	44	19	6	29	1.75
29776121--29776186	28	2.4	28	80	14	84	66	0	1	31	1.01
29783678--29783755	25	3.1	25	78	14	88	23	24	17	34	1.96
29793070--29793106	19	1.9	19	100	0	74	40	0	10	48	1.38
29795358--29795401	22	2.0	22	90	0	70	27	11	25	36	1.90
29798783--29798807	13	1.9	13	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29814455--29814504	21	2.3	23	83	13	70	48	0	14	38	1.44
29815886--29815927	20	2.1	20	86	8	59	38	2	9	50	1.48
29816018--29816567	290	1.9	286	85	3	746	31	18	13	36	1.90
29817593--29817640	14	3.4	14	80	11	53	20	0	6	72	1.05
29818674--29818706	6	5.5	6	89	10	50	87	0	12	0	0.53
29820875--29820957	44	1.9	43	85	7	114	45	7	1	45	1.38
29821462--29821501	19	2.1	19	85	4	53	55	2	2	40	1.27
29826756--29826811	27	2.1	27	83	6	69	60	1	1	35	1.17
29828396--29828446	17	2.7	19	79	17	61	25	15	15	43	1.86
29831789--29831930	42	3.4	41	79	13	164	36	25	16	21	1.94
29831909--29831959	26	2.0	26	92	0	84	23	33	25	17	1.96
29839330--29839469	42	3.3	42	78	14	144	35	25	17	22	1.95
29844067--29844104	20	1.9	20	88	0	58	23	7	18	50	1.73
29849222--29850062	77	10.9	76	85	1	793	24	16	16	41	1.89
29849376--29849637	40	6.8	37	70	14	181	25	17	17	39	1.91
29849222--29850062	231	3.6	230	82	2	898	24	16	16	41	1.89
29849752--29849957	37	5.4	37	74	11	209	24	16	14	44	1.85
29850041--29850085	22	2.0	23	86	4	65	24	15	17	42	1.88
29850168--29850292	37	3.3	36	76	8	97	30	18	11	40	1.85
29850088--29850255	77	2.2	77	80	6	189	29	17	13	39	1.88
29850228--29850324	37	2.6	37	85	3	124	27	19	10	42	1.84
29850233--29850351	37	3.2	37	80	7	98	26	21	11	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29856671--29856919	32	7.8	32	76	5	164	38	22	19	20	1.94
29856671--29856880	96	2.2	96	82	1	251	38	22	19	19	1.93
29866067--29866116	24	2.0	25	88	3	75	62	8	6	24	1.46
29866773--29866866	41	2.3	41	98	1	179	39	22	5	32	1.77
29879582--29879622	20	2.0	21	86	13	59	34	4	12	48	1.62
29886056--29886091	14	2.6	14	91	4	56	33	11	22	33	1.89
29893551--29893618	6	12.0	6	80	14	65	63	2	2	30	1.24
29893551--29893618	12	6.1	11	80	14	77	63	2	2	30	1.24
29902972--29903150	45	4.0	45	82	5	202	27	21	11	38	1.89
29903073--29903144	21	3.3	21	74	11	72	26	18	13	41	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163