genome.fa.s4.2.7.7.80.10.50.1000.156.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  156  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51978778--51978849	27	2.7	27	93	0	117	34	0	12	52	1.39
51978948--51978985	19	2.0	19	94	0	67	36	7	5	50	1.54
51979205--51979281	27	2.9	28	90	3	115	19	38	24	16	1.92
51982415--51982454	21	1.9	21	84	0	53	57	0	2	40	1.12
52005778--52005836	29	2.0	30	86	3	84	52	13	5	28	1.61
52015649--52015787	25	5.2	25	74	20	104	46	17	33	2	1.63
52015690--52015803	30	3.7	32	72	20	100	47	16	33	2	1.61
52015774--52015798	7	3.6	7	100	0	50	44	16	40	0	1.47
52016154--52016229	29	2.7	26	74	18	73	40	0	1	57	1.07
52017303--52017340	2	19.0	2	94	0	67	0	2	47	50	1.15
52021348--52021386	21	1.9	21	84	5	53	48	5	2	43	1.38
52023348--52023381	14	2.3	15	90	10	52	58	0	2	38	1.13
52026344--52026500	71	2.2	71	81	4	192	42	14	10	32	1.79
52026483--52026562	35	2.3	35	80	0	88	41	16	7	35	1.76
52026952--52027095	41	3.5	41	88	0	216	33	24	18	24	1.97
52040179--52040216	20	1.9	20	84	10	51	65	0	5	28	1.14
52040991--52041035	14	2.8	17	74	22	51	40	0	2	57	1.11
52047737--52047807	29	2.4	28	79	6	79	29	2	0	67	1.05
52047765--52047841	40	2.0	38	87	12	113	31	2	0	66	1.05
52047758--52047861	41	2.6	40	76	13	106	34	2	0	62	1.10
52050294--52050365	19	3.7	19	88	3	108	36	11	15	37	1.83
52051381--52051405	9	2.8	9	100	0	50	24	0	8	68	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52051688--52051882	98	2.0	97	91	1	318	31	9	21	37	1.86
52056008--52056039	15	2.1	15	94	0	55	21	12	0	65	1.25
52062558--52062745	102	1.8	102	98	0	367	40	15	12	30	1.84
52063950--52064026	37	2.1	37	92	0	127	32	6	10	50	1.62
52064266--52064322	19	2.9	19	73	2	51	57	3	0	38	1.16
52077617--52077795	88	2.0	89	98	1	351	35	4	5	54	1.44
52089605--52089640	11	3.2	11	84	7	54	0	19	0	80	0.71
52098753--52098813	32	1.9	32	93	0	104	31	1	36	31	1.68
52098789--52098838	24	2.1	24	88	0	73	30	2	30	38	1.69
52102900--52102954	23	2.4	23	93	0	92	25	16	16	41	1.88
52103195--52103242	25	1.9	25	86	0	69	62	4	0	33	1.14
52103662--52103699	20	1.9	19	89	5	58	57	5	0	36	1.21
52105156--52105190	16	2.2	16	94	0	61	42	0	8	48	1.33
52105201--52105370	59	2.9	59	95	0	295	40	5	10	44	1.60
52106371--52106396	9	2.9	9	100	0	52	30	0	0	69	0.89
52106505--52106565	27	2.4	24	75	19	61	59	1	6	32	1.33
52112928--52113017	45	2.0	44	93	2	153	33	7	13	45	1.72
52117241--52117265	12	2.1	12	100	0	50	40	8	0	52	1.31
52120764--52120806	23	1.9	22	90	4	68	72	0	0	27	0.85
52121267--52121307	21	1.9	22	90	5	66	48	0	2	48	1.14
52126237--52126308	36	2.0	36	91	0	117	33	12	13	40	1.83
52127959--52128232	31	8.7	31	86	3	327	31	10	16	41	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52128350--52128540	43	4.4	43	88	0	265	25	15	24	34	1.95
52144967--52145043	38	2.0	38	92	0	127	40	14	18	27	1.89
52154029--52154068	6	6.7	6	100	0	80	50	35	0	15	1.44
52163954--52164000	24	2.0	24	82	0	58	70	6	4	19	1.26
52163962--52165310	674	2.0	675	99	0	2691	32	19	13	34	1.91
52169774--52169980	112	1.8	112	94	2	371	25	15	11	48	1.78
52175792--52175867	23	3.3	23	87	5	109	30	26	23	19	1.98
52176314--52176372	30	2.0	30	83	6	75	27	22	8	42	1.82
52178498--52178537	14	2.9	13	82	10	53	77	10	0	12	0.99
52178526--52178576	19	2.6	19	84	3	66	58	7	1	31	1.37
52195157--52195260	29	3.7	29	65	14	90	36	13	12	37	1.83
52197024--52197054	3	10.7	3	93	6	55	29	0	0	70	0.87
52197022--52197051	14	2.1	14	100	0	60	26	0	0	73	0.84
52197024--52197056	17	1.9	17	100	0	66	27	0	0	72	0.85
52197326--52197360	15	2.2	15	90	10	52	57	0	0	42	0.99
52197887--52197931	23	2.0	22	83	12	56	35	2	4	57	1.31
52200958--52200992	17	2.1	16	89	5	52	40	0	2	57	1.14
52202773--52202832	31	2.0	31	83	3	77	40	5	3	51	1.40
52202781--52202850	31	2.3	31	80	5	79	38	7	7	47	1.59
52203097--52203164	31	2.2	30	82	12	84	50	8	5	35	1.58
52214832--52214922	41	2.2	42	84	5	123	39	14	3	42	1.62
52216012--52216088	31	2.5	31	82	4	102	38	11	6	42	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52217331--52217381	24	2.2	22	82	6	57	15	13	3	66	1.39
52221429--52221537	42	2.7	40	75	14	123	56	2	5	34	1.37
52223143--52223179	14	2.4	17	82	17	53	27	5	8	59	1.48
52223137--52223179	14	2.8	15	77	19	52	25	6	6	60	1.48
52230176--52230222	9	5.0	9	76	19	51	55	0	0	44	0.99
52230176--52230226	19	2.7	20	84	9	70	56	0	0	43	0.99
52230733--52231254	173	3.0	173	97	0	963	28	19	14	38	1.90
52238949--52238987	19	2.1	19	95	0	69	38	28	5	28	1.78
52241006--52241073	34	2.1	32	83	10	84	58	5	2	32	1.37
52259028--52259060	2	16.5	2	93	0	57	45	0	3	51	1.16
52269771--52269797	14	1.9	14	100	0	54	44	3	0	51	1.19
52270022--52270060	20	1.9	20	84	5	51	51	0	0	48	1.00
52271477--52271521	22	2.1	22	87	4	65	31	11	15	42	1.82
52272681--52272707	13	2.1	13	100	0	54	44	0	0	55	0.99
52274382--52274436	22	2.7	19	76	23	51	60	5	1	32	1.30
52274702--52274727	11	2.4	11	100	0	52	50	7	11	30	1.67
52278935--52279031	33	3.0	32	74	5	97	21	19	30	27	1.98
52280308--52280386	40	2.0	40	89	0	122	36	17	11	34	1.86
52287307--52288223	458	2.0	458	99	0	1816	39	20	18	21	1.93
52298892--52299187	148	2.0	148	98	1	576	45	7	14	32	1.73
52313296--52313333	18	2.2	17	95	4	67	34	0	0	65	0.93
52347582--52347707	37	3.2	37	65	18	101	41	8	4	45	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52347554--52347716	81	2.0	82	98	1	319	39	8	6	45	1.60
52358266--52358331	3	22.0	3	96	0	123	65	0	1	33	1.02
52359398--52359428	15	2.1	15	93	0	53	22	0	29	48	1.51
52359851--52359891	20	2.0	20	95	0	73	43	4	2	48	1.37
52362384--52362426	22	2.0	22	86	9	61	51	4	0	44	1.22
52362493--52362529	7	5.3	7	100	0	74	72	0	0	27	0.84
52362493--52362550	14	4.2	13	81	18	57	68	0	0	31	0.89
52371838--52371866	3	9.7	3	100	0	58	68	0	0	31	0.89
52374008--52374188	43	4.2	43	93	1	283	33	22	21	22	1.97
52374499--52374557	21	2.8	21	84	0	73	5	45	18	30	1.71
52374522--52374569	21	2.3	21	88	0	69	2	45	20	31	1.63
52379639--52379680	19	2.2	19	86	0	57	23	2	45	28	1.66
52379864--52380372	230	2.2	231	88	2	763	33	20	17	28	1.95
52380330--52380862	265	2.0	266	96	1	980	32	18	12	36	1.88
52381076--52381122	21	2.2	21	84	0	58	51	34	0	14	1.43
52381088--52381159	21	3.4	21	76	0	63	44	43	0	12	1.42
52381415--52381445	15	2.0	16	93	6	55	38	45	0	16	1.47
52381703--52381751	18	2.5	21	80	9	59	26	2	10	61	1.39
52382300--52382398	39	2.5	38	80	9	101	15	18	22	44	1.86
52382777--52382807	15	2.1	15	93	0	53	45	0	16	38	1.47
52395215--52395415	31	6.5	31	75	3	156	33	8	14	42	1.78
52395215--52395415	61	3.3	61	77	0	204	33	8	14	42	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52395179--52395415	92	2.6	91	78	5	244	34	8	16	41	1.77
52395558--52395820	84	3.1	84	90	5	383	27	17	25	29	1.97
52395557--52395820	127	2.1	126	94	2	460	27	17	25	29	1.97
52395557--52395820	43	6.3	42	86	7	360	27	17	25	29	1.97
52395812--52395971	81	2.0	82	97	2	304	28	16	21	32	1.96
52397376--52397439	30	2.1	30	86	11	87	35	26	10	26	1.90
52415697--52415758	30	2.1	29	81	3	70	22	11	6	59	1.54
52416129--52416197	30	2.2	30	82	5	75	42	15	4	37	1.68
52418639--52418698	31	1.9	31	96	0	111	55	8	3	33	1.47
52429918--52429977	30	2.0	31	86	3	86	20	40	0	40	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163