genome.fa.s4.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  132  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42697023--42697078	28	2.0	29	85	3	78	42	5	7	44	1.54
42697306--42697357	26	2.0	27	88	3	79	65	7	0	26	1.20
42697583--42697842	136	1.9	136	92	0	439	32	18	15	33	1.92
42698440--42698465	6	4.3	6	100	0	52	80	0	0	19	0.71
42700238--42700265	6	4.7	6	100	0	56	85	0	0	14	0.59
42702243--42702289	20	2.3	20	100	0	94	31	12	6	48	1.66
42705198--42705278	10	8.1	10	75	13	60	59	2	3	34	1.29
42705211--42705278	30	2.3	30	80	10	77	61	2	1	33	1.20
42711179--42711223	22	2.1	21	84	12	56	51	2	0	46	1.13
42715424--42715638	107	2.0	108	99	0	423	40	4	7	47	1.52
42725881--42725942	31	2.0	31	96	0	115	33	8	19	38	1.81
42730505--42730571	28	2.4	28	82	5	82	59	1	0	38	1.06
42730511--42730570	27	2.1	28	84	6	77	56	1	0	41	1.09
42734072--42734108	18	2.1	18	100	0	74	27	0	0	72	0.84
42734072--42734103	10	3.4	10	83	16	50	28	0	0	71	0.86
42734068--42734109	18	2.6	16	82	17	59	30	0	0	69	0.89
42735457--42735503	15	2.8	17	72	18	53	51	0	19	29	1.47
42736313--42736343	9	3.4	9	90	0	53	25	12	22	38	1.90
42739373--42739460	46	1.9	46	86	2	124	40	1	13	44	1.51
42739519--42739566	24	2.0	24	88	8	71	50	12	20	16	1.78
42739656--42739722	21	3.2	21	64	8	55	16	19	14	49	1.80
42739658--42739765	42	2.6	42	86	0	144	17	21	15	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42743506--42743645	42	3.3	42	81	10	126	26	17	24	32	1.97
42759400--42759435	14	2.5	15	81	9	56	58	0	8	33	1.28
42762245--42762283	12	3.0	12	80	20	51	48	0	25	25	1.51
42763267--42763307	10	4.2	10	82	14	50	51	0	7	41	1.30
42766798--42766861	30	2.2	30	82	2	76	53	6	4	35	1.47
42780191--42780252	31	2.0	31	100	0	124	32	3	9	54	1.49
42780487--42781184	348	2.0	349	99	0	1380	39	12	13	34	1.83
42798084--42798146	31	2.0	31	100	0	126	33	9	34	22	1.86
42801338--42801385	25	1.9	25	100	0	96	45	16	8	29	1.76
42801338--42801394	25	2.3	25	90	0	87	45	14	8	31	1.75
42801740--42801792	28	2.0	26	85	14	72	54	1	3	39	1.29
42805872--42805904	2	16.5	2	100	0	66	51	0	48	0	1.00
42815306--42815343	1	38.0	1	100	0	76	0	0	0	100	0.00
42840338--42840373	18	2.0	18	88	0	54	5	36	8	50	1.56
42844379--42844403	11	2.3	11	100	0	50	8	8	0	84	0.79
42846063--42846106	22	2.0	22	86	4	61	68	4	2	25	1.20
42849918--42850005	45	2.0	45	88	0	131	21	22	20	35	1.96
42865618--42865740	65	1.9	65	84	0	165	49	2	9	38	1.49
42871368--42871439	25	2.9	25	83	4	92	30	19	27	22	1.98
42874462--42874547	28	3.1	28	84	0	109	33	20	16	29	1.95
42876602--42876676	39	1.9	38	86	7	107	48	4	8	40	1.51
42878099--42878131	15	2.3	15	89	5	50	42	3	0	54	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42880780--42880842	32	2.0	32	87	6	92	38	11	9	41	1.73
42894974--42894999	6	4.3	6	100	0	52	34	0	65	0	0.93
42905020--42905050	7	4.4	7	100	0	62	16	0	0	83	0.64
42905038--42905082	21	2.2	20	84	4	54	31	6	4	57	1.44
42911838--42911892	22	2.4	23	76	14	60	43	1	5	49	1.36
42913623--42913814	100	1.9	100	92	0	321	34	6	7	51	1.56
42931973--42932005	16	2.1	16	88	5	50	30	0	9	60	1.27
42932321--42932983	130	5.1	130	78	4	593	37	10	16	34	1.83
42940330--42940396	34	2.0	34	90	0	107	22	11	16	49	1.78
42952311--42952520	111	1.9	110	85	6	291	51	7	6	34	1.57
42956519--42956555	9	4.1	9	89	0	56	45	10	10	32	1.74
42956925--42956985	20	3.2	19	78	15	56	22	34	0	42	1.54
42957583--42957691	53	2.1	53	100	0	218	41	26	1	30	1.66
42958933--42959343	50	7.8	50	80	9	419	23	28	21	26	1.99
42959093--42959343	56	4.8	49	81	12	277	24	27	20	27	1.99
42958989--42959343	106	3.3	106	97	0	658	24	28	21	26	1.99
42958933--42959343	212	2.0	207	90	5	648	23	28	21	26	1.99
42960591--42960645	26	2.1	26	100	0	110	30	10	20	38	1.87
42962014--42962045	16	1.9	17	93	6	57	50	0	6	43	1.27
42965093--42965117	9	2.8	9	100	0	50	44	0	0	56	0.99
42964916--42965380	235	2.0	232	89	2	716	31	11	14	42	1.82
42970962--42971005	21	2.0	22	82	4	54	38	2	2	56	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42971613--42971642	15	2.0	15	100	0	60	40	6	6	46	1.56
42972083--42972123	20	2.0	20	90	0	64	19	12	19	48	1.80
42972285--42972323	20	2.0	20	94	0	69	33	0	12	53	1.39
42974645--42974687	17	2.4	17	84	11	50	48	2	0	48	1.14
42982637--42982665	6	4.8	6	100	0	58	86	0	13	0	0.58
43010513--43010571	22	2.6	23	68	10	59	27	3	5	64	1.30
43013033--43013071	1	39.0	1	94	0	69	0	2	0	97	0.17
43020424--43020490	23	2.8	23	75	6	62	58	0	7	34	1.26
43020476--43020519	16	2.7	16	78	3	52	61	0	6	31	1.22
43020594--43020640	18	2.6	17	83	9	58	63	0	6	29	1.19
43020599--43020653	15	3.5	15	76	20	51	61	1	9	27	1.36
43022034--43022058	6	4.2	6	100	0	50	84	0	0	16	0.63
43032438--43032517	35	2.3	34	78	20	85	40	2	5	52	1.37
43032469--43033285	56	14.6	56	99	0	1562	41	1	5	51	1.35
43033535--43033734	103	1.9	103	91	2	330	30	38	9	21	1.85
43033638--43033685	21	2.3	21	85	7	71	27	41	8	22	1.82
43035503--43035531	7	4.3	7	91	8	51	82	0	0	17	0.66
43035506--43035531	13	2.0	13	100	0	52	84	0	0	15	0.62
43044454--43044478	7	3.6	7	100	0	50	88	0	0	12	0.53
43045861--43045912	15	3.4	15	83	2	68	53	1	25	19	1.55
43049514--43049544	9	3.4	9	90	0	53	25	12	22	38	1.90
43049596--43049632	9	4.1	9	92	0	65	45	13	10	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43049846--43049905	30	2.0	31	83	9	79	18	40	0	41	1.50
43058164--43058276	42	2.7	42	80	2	129	20	17	18	43	1.88
43058267--43058324	21	2.8	21	84	5	82	13	24	20	41	1.89
43075973--43076007	18	1.9	18	88	11	54	28	40	0	31	1.57
43078676--43078712	5	7.4	5	100	0	74	21	0	59	18	1.38
43086367--43086403	11	3.4	11	92	7	58	70	8	0	21	1.13
43086531--43086860	151	2.2	152	89	3	497	30	7	8	53	1.60
43086662--43087150	244	2.0	247	90	4	776	32	11	7	48	1.68
43087447--43087598	41	3.7	41	84	6	193	19	21	29	29	1.97
43087446--43087598	82	1.9	82	87	5	229	18	21	30	29	1.97
43087913--43088150	119	2.0	119	99	0	467	30	3	21	44	1.68
43088188--43088230	14	3.2	13	80	9	50	30	0	34	34	1.58
43088397--43088425	14	2.1	14	100	0	58	6	0	48	44	1.29
43089833--43089870	16	2.3	17	95	4	69	2	13	21	63	1.42
43090736--43090763	2	14.0	2	100	0	56	50	0	0	50	1.00
43094514--43094678	43	3.9	42	77	7	138	25	16	28	29	1.97
43095782--43095814	16	2.0	17	88	5	50	57	0	0	42	0.98
43117933--43117980	25	1.9	25	82	0	60	54	10	6	29	1.59
43127432--43127465	6	5.7	6	100	0	68	0	0	29	70	0.87
43130135--43130169	15	2.4	14	86	9	52	71	0	0	28	0.86
43132565--43132673	47	2.2	50	82	6	134	21	11	31	35	1.89
43133210--43133271	25	2.5	25	83	0	70	24	24	12	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43136437--43136500	28	2.3	28	94	0	110	42	9	0	48	1.35
43136437--43136508	28	2.5	28	90	2	99	47	8	0	44	1.33
43136930--43136995	19	3.5	19	79	4	89	37	10	1	50	1.47
43137658--43137682	12	2.1	12	100	0	50	28	16	16	40	1.89
43137720--43137805	27	3.2	27	88	0	118	15	30	26	27	1.96
43145484--43145552	25	2.8	24	80	8	66	30	17	23	28	1.97
43145509--43145648	24	5.7	25	72	11	69	34	21	26	17	1.96
43145626--43145697	25	2.9	24	78	10	65	38	22	25	13	1.91
43145585--43145724	74	1.9	75	84	3	192	41	21	22	15	1.90
43153981--43154077	25	3.9	25	75	1	88	34	20	25	19	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163