genome.fa.s4.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  114  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36773924--36773949	2	13.0	2	100	0	52	50	0	0	50	1.00
36776966--36777129	80	2.0	81	98	1	321	26	8	12	52	1.67
36778969--36778996	13	2.2	13	100	0	56	32	28	14	25	1.94
36779590--36779761	30	5.7	30	88	2	220	43	16	8	31	1.78
36779591--36779756	90	1.8	90	88	0	251	43	16	9	31	1.79
36795203--36795237	18	2.0	17	88	5	52	45	0	0	54	0.99
36796468--36796503	2	18.5	2	94	5	65	50	0	0	50	1.00
36800833--36800878	20	2.3	20	100	0	92	36	10	13	39	1.79
36801983--36802025	23	1.9	23	90	4	70	23	0	16	60	1.35
36816735--36816761	2	13.5	2	100	0	54	51	0	0	48	1.00
36819607--36819749	73	2.0	73	87	2	207	33	10	9	46	1.70
36822804--36822851	20	2.5	18	78	21	53	60	2	2	35	1.20
36822803--36822851	9	5.0	10	79	13	50	59	2	2	36	1.21
36827069--36827115	22	2.1	22	84	11	60	42	0	0	57	0.98
36827073--36827112	20	2.0	20	90	4	64	45	0	0	55	0.99
36831032--36831691	329	2.0	328	98	1	1270	44	20	11	23	1.83
36833283--36833330	20	2.5	18	78	21	53	60	2	2	35	1.20
36833282--36833330	9	5.0	10	79	13	50	59	2	2	36	1.21
36837548--36837594	22	2.1	22	84	11	60	42	0	0	57	0.98
36837552--36837591	20	2.0	20	90	4	64	45	0	0	55	0.99
36844907--36844969	31	2.0	31	90	0	99	41	7	12	38	1.73
36847203--36847270	33	2.1	33	100	0	136	41	11	20	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36852546--36852610	32	2.0	32	100	0	130	18	24	18	38	1.93
36859040--36859161	43	2.8	43	79	9	140	30	29	20	19	1.97
36861388--36861479	41	2.2	41	98	0	175	26	23	20	29	1.99
36861459--36861605	42	3.5	42	91	0	231	28	23	17	30	1.97
36864413--36864460	17	2.9	17	90	3	71	27	0	18	54	1.44
36879604--36879629	7	3.7	7	100	0	52	30	0	15	53	1.42
36882045--36882069	2	12.5	2	100	0	50	48	0	0	52	1.00
36887383--36887704	170	1.9	170	86	0	464	17	15	19	47	1.82
36890800--36890848	25	1.9	26	83	4	64	36	20	0	42	1.52
36897687--36897803	40	2.9	41	77	7	116	32	23	25	17	1.97
36897861--36898181	41	7.8	40	80	6	302	15	23	25	35	1.94
36897861--36898164	124	2.5	123	81	4	335	14	23	25	36	1.93
36906590--36906920	165	2.0	165	100	0	662	30	13	18	37	1.90
36907002--36907027	2	13.0	2	100	0	52	50	0	0	50	1.00
36908877--36908922	20	2.2	21	80	3	58	36	6	0	56	1.25
36911582--36911611	2	15.0	2	92	0	51	50	0	3	46	1.18
36917975--36918015	21	2.0	21	85	0	55	75	2	4	17	1.08
36924239--36924382	6	23.8	6	93	4	238	80	0	2	17	0.81
36924269--36924381	1	113.0	1	67	0	64	84	0	0	15	0.63
36935010--36935058	18	2.7	19	75	12	50	26	6	0	67	1.14
36935280--36935376	50	1.9	50	100	0	194	31	13	12	42	1.81
36935571--36935601	13	2.4	13	94	0	53	90	3	0	6	0.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36938984--36939144	33	4.8	32	72	11	135	28	26	14	30	1.95
36938972--36939212	101	2.4	101	92	0	392	28	26	14	30	1.95
36941101--36941134	12	2.7	13	86	9	52	17	0	41	41	1.50
36941321--36941733	125	3.3	125	90	0	637	32	16	20	30	1.95
36944767--36944887	49	2.5	49	98	0	233	42	9	2	44	1.51
36944767--36944901	49	2.8	48	89	9	165	43	9	2	44	1.49
36945027--36945066	21	1.9	21	85	10	55	12	17	37	32	1.87
36945308--36945350	18	2.4	18	80	0	50	44	9	25	20	1.81
36947173--36947259	11	8.3	11	65	19	51	43	2	29	24	1.66
36947210--36947272	22	2.8	22	83	11	76	44	1	30	23	1.63
36948768--36948823	28	2.0	28	89	0	85	44	17	16	21	1.86
36961874--36961906	18	1.9	17	88	11	50	54	0	0	45	0.99
36961924--36961973	16	3.0	16	79	5	55	64	4	0	32	1.12
36962671--36962707	20	1.9	20	88	5	58	43	8	0	48	1.32
36963711--36963747	20	1.9	20	88	5	58	43	8	0	48	1.32
36964253--36964296	19	2.5	17	85	7	52	45	2	0	52	1.13
36964456--36964488	16	2.2	15	89	10	50	42	0	6	51	1.26
36966530--36966614	41	2.0	43	86	4	120	27	24	2	45	1.65
36969573--36969603	13	2.4	13	94	0	53	54	0	3	41	1.16
36970564--36970830	107	2.4	108	82	6	290	26	21	21	30	1.98
36973511--36973643	57	2.3	57	100	0	266	45	3	6	45	1.45
36973625--36973664	21	1.9	21	100	0	80	42	0	7	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36974065--36974107	11	3.9	11	82	11	61	20	20	0	58	1.40
36974062--36974107	5	8.6	5	83	9	56	19	19	0	60	1.36
36974056--36974107	22	2.4	21	90	3	77	19	17	0	63	1.31
36974123--36974166	17	2.5	18	81	3	54	18	13	6	61	1.54
36974191--36974273	5	15.6	5	73	20	53	30	19	0	50	1.48
36974212--36974261	11	4.5	11	80	9	66	30	18	0	52	1.46
36974266--36974305	20	2.1	20	90	9	66	22	5	0	72	1.04
36974238--36974291	23	2.3	23	75	6	56	24	12	0	62	1.30
36974437--36974478	22	2.0	22	86	13	61	33	7	0	59	1.25
36974681--36974723	17	2.5	17	88	0	59	18	23	4	53	1.63
36974693--36974724	11	2.8	12	90	9	50	18	25	0	56	1.42
36974693--36974724	6	5.7	6	89	10	50	18	25	0	56	1.42
36974711--36974786	28	2.9	28	66	24	74	23	14	0	61	1.32
36974720--36974834	23	4.9	23	65	27	71	22	13	0	62	1.36
36974801--36974888	26	3.5	26	68	24	71	21	11	2	64	1.36
36974715--36974894	92	1.9	94	93	3	310	23	13	1	62	1.38
36974711--36974895	48	3.9	48	80	9	227	23	13	1	62	1.38
36974744--36974933	92	2.1	92	83	6	233	24	12	1	61	1.40
36977869--36978132	109	2.4	108	80	8	284	28	20	19	31	1.97
36979316--36979627	112	2.7	111	83	5	383	21	20	25	32	1.98
36979434--36979823	182	2.1	183	95	4	714	20	21	25	32	1.98
36979611--36980007	113	3.5	111	84	7	502	21	22	25	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36988835--36988869	6	5.8	6	89	0	52	5	17	31	45	1.71
36992484--36992628	43	3.4	43	82	3	177	35	24	20	20	1.96
36992753--36992795	22	2.0	22	90	0	68	44	27	18	9	1.80
36997499--36997920	211	2.0	210	95	1	756	41	29	7	21	1.80
37009532--37009567	6	6.0	6	100	0	72	0	50	16	33	1.46
37015913--37015960	17	2.6	19	83	12	73	58	4	0	37	1.18
37016795--37016870	40	1.9	40	86	5	109	28	25	28	17	1.97
37016950--37017186	41	5.8	40	81	4	258	17	24	23	35	1.95
37016949--37017186	123	1.9	123	86	3	336	17	23	23	35	1.95
37016950--37017147	82	2.4	82	94	0	342	17	23	23	35	1.95
37020295--37020338	18	2.5	18	85	3	54	25	0	38	36	1.56
37027047--37027168	42	2.9	41	79	11	131	25	22	21	30	1.99
37027047--37027189	43	3.4	42	81	7	155	25	23	20	29	1.99
37029107--37029141	18	2.0	18	94	5	63	60	5	5	28	1.43
37031806--37031835	2	15.0	2	92	0	51	53	0	0	46	1.00
37032596--37032621	7	3.7	7	100	0	52	23	61	0	15	1.33
37035887--37035925	19	2.1	19	85	9	53	43	12	12	30	1.81
37036978--37037098	58	2.1	58	84	3	163	45	12	9	32	1.75
37040755--37041017	105	2.5	105	84	1	339	35	15	17	30	1.92
37051095--37051130	11	3.3	11	84	0	54	66	0	2	30	1.06
37055131--37055163	3	11.0	3	100	0	66	33	0	0	66	0.92
37056397--37056438	22	1.9	22	85	9	59	59	0	2	38	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37059109--37059157	22	2.3	21	82	3	53	61	4	6	28	1.38
37060954--37060986	17	1.9	17	93	0	57	51	0	12	36	1.39
37061122--37061160	3	13.0	3	88	0	60	64	2	2	30	1.21
37061499--37061590	19	4.8	19	86	5	141	38	14	9	38	1.79
37061476--37061590	38	2.9	38	88	5	158	39	14	8	37	1.77
37062002--37062099	44	2.2	44	87	3	135	26	22	20	30	1.98
37062549--37064323	88	20.2	88	90	0	2604	20	24	26	28	1.99
37069621--37069653	17	1.9	17	93	0	57	51	0	12	36	1.39
37069789--37069827	3	13.0	3	88	0	60	64	2	2	30	1.21
37070143--37070189	23	2.0	24	91	4	78	40	17	6	36	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163