genome.fa.s4.2.7.7.80.10.50.1000.135.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  135  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43895509--43895547	16	2.5	16	87	4	53	30	2	2	64	1.21
43900302--43900352	27	2.0	25	88	7	75	45	5	0	49	1.26
43901347--43901653	154	2.0	152	96	1	569	30	14	15	39	1.87
43905172--43905240	37	1.9	38	82	11	92	20	2	7	69	1.25
43949877--43949952	32	2.3	33	84	6	93	38	2	9	50	1.49
43957270--43957362	42	2.1	44	86	9	129	19	40	18	21	1.91
43962699--43962735	19	2.0	19	89	5	58	37	0	5	56	1.22
43962704--43962748	19	2.2	21	84	7	58	40	0	4	55	1.20
43962861--43962891	9	3.4	9	90	0	53	41	22	9	25	1.84
43965998--43966023	7	3.7	7	100	0	52	0	15	30	53	1.42
43973868--43973995	42	3.1	41	67	17	104	29	3	3	62	1.31
43973911--43973941	4	7.8	4	92	0	53	22	3	0	74	0.96
43973842--43974010	81	2.1	81	93	2	286	27	5	3	63	1.32
43973923--43974053	69	1.9	69	93	0	226	27	4	4	63	1.34
43973934--43974080	69	2.1	69	86	3	197	26	7	4	61	1.43
43975224--43975956	47	15.6	47	99	0	1430	38	14	12	33	1.84
43976192--43976240	15	3.2	15	85	8	55	48	20	0	30	1.50
43976927--43977009	43	1.9	43	85	4	114	34	31	18	15	1.92
43979168--43979209	22	1.9	22	90	0	66	9	11	14	64	1.50
43984711--43984758	24	2.0	24	88	8	71	27	0	10	62	1.27
43985184--43985208	3	8.3	3	100	0	50	32	0	0	68	0.90
43995156--43995198	17	2.5	17	80	3	50	65	11	2	20	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44004668--44004712	23	1.9	24	81	4	56	44	2	11	42	1.52
44007528--44007573	23	2.0	23	82	4	56	50	19	2	28	1.60
44011554--44011601	19	2.7	17	78	15	53	35	4	2	58	1.29
44020502--44020540	20	2.0	20	94	0	69	43	2	5	48	1.38
44021354--44021591	119	2.0	120	99	0	469	34	10	4	50	1.58
44037633--44038529	132	6.8	132	93	0	1515	30	20	24	24	1.98
44037633--44038465	44	18.9	44	62	20	181	31	20	24	24	1.98
44038586--44038679	46	2.0	46	100	0	188	40	23	17	19	1.91
44040452--44040644	98	2.0	98	91	2	316	27	11	24	35	1.91
44044146--44044239	44	2.1	44	98	0	179	37	14	6	41	1.72
44044164--44044234	22	3.2	22	63	21	58	42	12	7	38	1.70
44044218--44044261	21	2.0	21	83	12	54	40	11	4	43	1.61
44046763--44046795	16	2.1	16	94	0	57	78	0	0	21	0.75
44050264--44050424	66	2.4	66	80	2	171	32	16	24	26	1.96
44059607--44059650	21	2.1	21	100	0	88	50	18	22	9	1.75
44061661--44061926	43	6.2	43	80	6	254	30	26	15	27	1.96
44061647--44061926	128	2.2	130	81	5	336	31	26	14	27	1.95
44062563--44062651	33	2.7	33	91	6	153	32	2	37	28	1.70
44064298--44064337	18	2.2	19	86	13	57	40	2	2	55	1.27
44064174--44064373	95	2.0	100	88	7	304	47	4	3	45	1.38
44064850--44064901	24	2.2	24	82	6	61	57	0	26	15	1.38
44090288--44090360	24	3.1	23	75	7	74	34	21	27	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44090345--44090421	25	3.1	25	72	7	75	36	22	24	16	1.94
44093558--44093602	22	2.2	20	84	8	54	55	2	2	40	1.24
44094851--44094909	24	2.5	24	86	2	75	61	6	1	30	1.32
44106137--44106199	30	2.1	29	82	8	74	42	19	9	28	1.82
44116783--44116829	21	2.2	22	84	3	60	40	6	2	51	1.39
44117497--44117539	19	2.2	20	84	12	54	32	9	0	58	1.30
44126481--44126595	44	2.6	44	79	4	142	24	24	12	39	1.89
44129095--44129317	111	2.0	110	92	2	376	31	5	9	52	1.58
44130151--44130336	43	4.3	43	85	6	266	30	33	19	17	1.95
44133531--44133669	61	2.3	61	96	0	251	50	14	9	25	1.73
44135235--44135302	14	4.9	14	81	1	75	33	47	0	19	1.50
44135245--44135302	7	8.4	7	84	3	73	34	48	0	17	1.47
44135749--44136228	41	11.7	41	89	0	708	27	25	22	24	2.00
44140849--44140997	73	2.0	74	98	1	291	31	6	18	42	1.76
44140977--44141014	9	4.2	9	93	0	67	26	10	23	39	1.87
44142155--44142387	46	5.5	46	76	17	277	33	3	0	63	1.10
44142188--44142424	38	5.9	37	76	16	222	31	3	0	64	1.09
44142189--44142416	45	5.4	46	70	25	223	31	3	0	64	1.10
44142162--44142425	83	3.2	83	100	0	528	31	3	0	64	1.10
44142234--44142350	19	6.3	18	71	16	80	31	2	0	65	1.06
44142317--44142409	19	4.9	19	72	6	64	32	3	0	64	1.09
44151342--44151451	52	2.1	52	98	0	211	23	14	17	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44154136--44154165	16	1.9	15	93	6	51	63	0	3	33	1.11
44154209--44154253	9	4.7	10	78	15	51	62	0	0	37	0.96
44155052--44155155	49	2.1	49	87	1	147	28	8	10	51	1.66
44157290--44157387	44	2.3	41	78	18	119	34	32	4	28	1.76
44157295--44157387	46	2.1	46	91	4	154	36	31	4	27	1.76
44157303--44157401	46	2.2	44	85	7	128	39	32	6	22	1.78
44161831--44161870	9	4.4	9	87	0	53	27	5	20	47	1.70
44161837--44161871	18	1.9	18	94	0	61	22	2	22	51	1.61
44171097--44171140	20	2.1	22	83	8	56	36	9	6	47	1.62
44172764--44172795	3	10.7	3	93	0	55	71	0	0	28	0.86
44187282--44187307	2	13.0	2	100	0	52	50	0	0	50	1.00
44192658--44192781	66	1.9	66	88	3	187	25	19	22	32	1.97
44200723--44200773	23	2.2	23	92	0	84	27	9	21	41	1.84
44203064--44203102	19	2.0	20	90	10	62	46	7	0	46	1.31
44206309--44206475	93	1.8	90	87	3	244	38	20	10	30	1.86
44206515--44206561	19	2.5	19	80	12	62	59	0	4	36	1.17
44206669--44206709	19	2.2	19	86	4	57	26	7	0	65	1.18
44206823--44207043	90	2.4	91	91	2	347	33	9	18	39	1.82
44206826--44207097	90	3.0	89	86	3	332	35	7	17	38	1.79
44207204--44207292	30	3.0	29	81	8	90	32	7	12	47	1.70
44207227--44207294	30	2.3	30	87	2	93	30	8	11	48	1.70
44209055--44209126	24	3.0	24	91	4	101	15	25	26	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44209058--44209162	24	4.4	24	84	4	97	17	24	25	32	1.97
44209184--44209249	25	2.6	25	88	4	98	19	30	18	31	1.96
44210711--44210737	13	2.1	13	100	0	54	29	14	22	33	1.94
44220110--44220166	3	19.0	3	92	0	96	33	3	0	63	1.12
44228401--44228434	8	4.2	8	92	0	59	8	0	14	76	1.01
44231066--44231148	26	3.3	26	65	19	66	44	12	2	40	1.54
44234560--44234678	19	5.7	20	67	26	61	58	2	1	36	1.21
44234553--44234597	19	2.5	18	86	10	65	55	2	0	42	1.12
44237679--44237718	21	1.9	21	84	0	53	45	45	5	5	1.47
44240558--44240594	9	4.1	9	92	0	65	29	10	13	45	1.77
44242447--44242623	88	2.0	89	98	1	347	42	12	11	33	1.78
44242619--44242683	30	2.1	31	82	2	78	38	12	9	40	1.75
44244548--44244579	4	8.0	4	100	0	64	25	0	50	25	1.50
44245702--44245897	100	1.9	103	87	7	290	38	17	19	24	1.93
44245914--44246169	103	2.5	103	77	7	286	32	19	16	31	1.94
44246142--44246396	128	2.0	126	90	3	395	34	17	12	35	1.88
44264308--44264345	20	1.9	20	88	0	58	76	0	18	5	0.97
44268823--44268865	12	3.5	12	76	17	52	72	0	4	23	1.04
44268824--44268869	15	3.4	15	72	27	57	71	0	4	23	1.03
44268839--44268880	5	8.4	5	79	10	50	76	0	2	21	0.90
44268822--44268879	25	2.3	25	100	0	116	74	0	3	22	0.97
44268819--44268873	8	6.9	8	74	15	51	74	0	3	21	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44268832--44268874	12	3.5	12	76	17	52	74	0	2	23	0.93
44269709--44269750	11	4.0	11	84	12	61	19	4	28	47	1.69
44269711--44269750	20	2.0	20	100	0	80	20	5	30	45	1.72
44269722--44269796	9	8.2	9	79	8	71	24	9	26	40	1.85
44269714--44269761	20	2.4	20	89	0	69	22	6	29	41	1.78
44269918--44269942	12	2.1	12	100	0	50	16	24	36	24	1.94
44275180--44275265	31	2.8	31	84	7	113	47	5	15	31	1.68
44277619--44277660	17	2.5	17	73	3	50	80	2	7	9	0.97
44277624--44277662	20	1.9	21	89	5	62	79	2	5	12	1.00
44277623--44277668	20	2.4	19	82	7	56	80	2	4	13	0.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163