genome.fa.s4.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  43  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13932630--13932695	28	2.4	28	100	0	132	15	15	19	50	1.79
13934562--13934607	18	2.5	18	83	16	51	45	0	2	52	1.13
13934585--13934634	22	2.3	22	80	16	59	38	2	4	56	1.30
13935335--13935366	6	5.3	6	100	0	64	65	0	0	34	0.93
13941758--13942794	518	2.0	519	99	0	2067	39	8	10	41	1.70
13946682--13946934	126	2.0	123	88	5	375	42	12	14	30	1.83
13947155--13947231	35	2.2	35	97	2	145	44	5	5	45	1.48
13947293--13947436	18	6.8	19	70	21	76	40	0	4	54	1.22
13947311--13947446	65	2.1	66	97	2	258	37	0	5	56	1.24
13947380--13947443	18	3.2	20	78	14	62	37	0	6	56	1.25
13947790--13947887	48	2.1	45	83	9	117	63	4	1	31	1.20
13957864--13957899	18	2.0	18	94	0	63	27	13	0	58	1.36
13957849--13957906	18	3.0	20	78	16	61	27	12	1	58	1.43
13958360--13958397	20	1.9	20	84	10	51	31	15	2	50	1.58
13959975--13960044	27	2.6	27	73	6	70	42	0	2	54	1.15
13960008--13960059	20	2.7	20	88	5	81	36	0	3	59	1.16
13959965--13960043	8	9.0	8	72	16	50	40	0	2	56	1.12
13959990--13960052	20	3.2	20	82	6	76	39	0	3	57	1.15
13969678--13969717	21	1.9	21	89	0	62	37	2	0	60	1.11
13969677--13969735	22	2.8	21	80	14	59	40	1	3	54	1.27
13970146--13970198	24	2.2	24	96	0	97	13	33	45	7	1.71
13980924--13981075	75	2.0	76	98	1	297	40	7	5	46	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13982306--13982347	22	2.0	21	95	4	75	21	2	9	66	1.32
13982307--13982354	22	2.2	22	88	3	71	22	2	10	64	1.35
13997887--13998009	44	2.9	43	80	11	153	24	17	27	30	1.97
14000860--14000897	15	2.5	15	100	0	76	28	31	31	7	1.86
14003007--14003038	13	2.5	13	95	5	57	71	6	12	9	1.29
14003731--14003769	18	2.2	17	86	13	53	33	0	20	46	1.51
14003981--14004562	23	25.3	23	99	0	1155	21	21	26	30	1.98
14012324--14012359	16	2.2	16	90	9	56	16	22	5	55	1.62
14012502--14012533	17	1.9	17	93	6	57	65	0	0	34	0.93
14012838--14012863	2	13.0	2	100	0	52	50	0	0	50	1.00
14012847--14014557	854	2.0	857	99	0	3401	36	16	20	26	1.94
14022317--14022373	10	5.7	10	73	8	53	31	0	1	66	1.02
14022307--14022376	20	3.5	20	72	14	65	35	0	1	62	1.04
14022307--14022374	19	3.6	18	75	13	64	35	0	1	63	1.04
14022345--14022384	19	2.2	19	86	4	55	37	2	0	60	1.11
14024661--14024691	7	4.4	7	91	0	53	45	35	0	19	1.51
14034972--14035022	13	3.9	13	72	10	50	39	23	5	31	1.79
14036644--14036838	42	4.7	41	90	2	300	22	21	23	32	1.98
14036644--14036838	83	2.3	84	91	0	311	22	21	23	32	1.98
14058934--14059281	9	38.7	9	68	19	142	31	2	19	46	1.65
14058934--14059058	34	3.4	34	72	21	126	30	1	22	45	1.62
14058934--14059086	77	2.0	77	100	0	306	31	2	20	45	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14059064--14059132	30	2.3	31	87	7	99	36	0	15	47	1.46
14058934--14059135	77	2.6	75	88	9	250	32	1	20	45	1.62
14058934--14059173	16	14.6	16	65	25	92	30	1	20	46	1.61
14060064--14060122	13	4.5	13	86	0	73	45	3	10	40	1.54
14060169--14060205	13	2.8	13	91	4	56	56	2	2	37	1.28
14061435--14061701	73	3.7	73	100	0	534	35	19	18	26	1.94
14062540--14062604	14	4.6	14	77	11	60	46	43	0	10	1.38
14062537--14062604	21	3.2	21	79	4	82	44	44	0	11	1.40
14062955--14063323	189	2.0	190	85	4	514	28	22	18	29	1.97
14063145--14063656	114	4.5	112	83	4	614	27	24	17	30	1.98
14062955--14063327	188	2.0	190	85	4	513	28	22	18	30	1.97
14063145--14063656	228	2.2	226	86	4	715	27	24	17	30	1.98
14063587--14063728	71	2.0	72	84	1	187	29	23	19	27	1.98
14063658--14063872	112	1.9	112	86	3	308	26	22	22	28	1.99
14073682--14073743	30	2.1	30	93	0	106	58	8	1	32	1.37
14075812--14075873	30	2.1	30	93	0	106	58	8	1	32	1.37
14076885--14076925	19	2.2	19	95	0	73	34	14	29	21	1.93
14086234--14086290	15	3.5	15	69	17	51	47	1	1	49	1.22
14087813--14087855	16	2.5	18	88	7	63	60	11	0	27	1.31
14093110--14093169	3	20.0	3	92	0	102	30	0	1	68	0.99
14093681--14093721	21	1.9	22	85	5	57	24	4	34	36	1.77
14093728--14093868	70	2.0	70	87	5	205	28	20	18	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14094247--14094277	16	1.9	16	93	0	53	35	19	6	38	1.77
14098142--14098266	62	2.0	61	90	1	196	22	29	11	36	1.89
14099596--14099671	36	2.1	36	92	0	125	18	13	28	39	1.88
14101969--14102132	35	4.6	35	84	2	184	25	14	17	42	1.87
14102283--14102366	31	2.7	31	88	0	123	14	25	39	21	1.91
14110778--14110871	47	2.0	47	89	0	143	30	14	22	31	1.94
14113575--14113651	34	2.2	34	80	11	84	61	0	1	37	1.05
14113735--14113769	17	2.0	18	88	5	54	48	2	0	48	1.16
14114727--14114780	19	2.9	18	91	5	81	12	3	0	83	0.78
14114729--14114780	27	1.9	27	88	0	77	13	3	0	82	0.80
14115120--14115149	7	4.3	7	95	0	51	73	0	3	23	0.98
14115345--14115412	25	2.6	26	86	11	95	60	10	8	20	1.56
14116792--14116966	71	2.5	70	80	3	190	33	16	20	30	1.94
14121906--14122055	43	3.5	41	82	12	160	31	28	18	22	1.97
14130155--14130198	15	2.9	15	80	6	52	50	6	0	43	1.29
14130168--14130284	62	1.9	62	86	5	168	52	3	2	41	1.32
14130260--14130370	20	5.9	18	73	15	66	50	3	2	43	1.33
14130320--14130354	17	2.0	17	88	5	52	45	0	5	48	1.26
14144341--14144366	5	5.2	5	100	0	52	42	19	19	19	1.90
14145973--14146013	13	3.1	14	89	6	59	19	12	14	53	1.72
14145973--14146013	21	2.0	21	85	9	57	19	12	14	53	1.72
14153348--14153381	17	1.9	18	94	5	61	41	0	11	47	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14158677--14158761	31	2.8	29	81	16	86	44	15	8	31	1.76
14172574--14172794	118	1.9	118	82	5	277	38	22	18	21	1.94
14175746--14175781	18	2.0	18	88	0	54	61	0	0	38	0.96
14175913--14175959	19	2.5	19	76	10	51	46	6	8	38	1.60
14176070--14176244	43	4.1	43	100	0	350	44	11	13	30	1.79
14185117--14185149	15	2.1	16	88	5	50	48	6	3	42	1.43
14186820--14186885	31	2.1	31	85	0	87	27	7	18	46	1.75
14193430--14193482	21	2.3	24	75	12	58	47	13	11	28	1.77
14197919--14197943	13	1.9	13	100	0	50	84	8	0	8	0.79
14199605--14199629	13	1.9	13	100	0	50	84	8	0	8	0.79
14208163--14208215	22	2.4	20	82	17	61	22	3	0	73	0.99
14209631--14209655	6	4.2	6	100	0	50	84	16	0	0	0.63
14209666--14209695	7	4.3	7	100	0	60	30	26	30	13	1.94
14211889--14214955	972	3.2	971	90	0	4999	29	16	18	32	1.93
14215173--14215353	88	2.1	88	97	1	346	25	30	20	22	1.99
14215264--14220998	971	5.9	971	91	1	8102	29	16	17	33	1.92
14221526--14221551	5	5.2	5	100	0	52	19	42	19	19	1.90
14225446--14225470	13	1.9	13	100	0	50	24	8	28	40	1.83
14227754--14227819	18	3.7	18	87	0	96	39	15	12	33	1.84
14230397--14230440	15	3.1	15	74	12	56	54	9	22	13	1.67
14230840--14230895	29	2.0	29	92	3	96	35	14	39	10	1.81
14240964--14240992	5	5.8	5	100	0	58	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14241104--14241257	40	3.8	39	74	5	139	37	18	21	22	1.94
14241293--14241408	41	2.8	40	88	5	162	19	19	32	27	1.97
14241626--14241703	22	3.6	22	70	14	65	25	0	35	38	1.56
14241642--14241682	14	2.9	15	78	10	50	26	0	34	39	1.57
14241698--14241731	15	2.3	15	89	0	50	14	0	50	35	1.44
14241695--14241744	23	2.2	24	86	13	70	14	0	48	38	1.44
14242209--14242293	19	4.2	19	65	24	57	42	7	2	48	1.43
14242229--14242329	31	3.3	31	72	5	114	39	6	2	50	1.44
14242210--14242344	62	2.2	62	100	0	270	41	5	2	49	1.42
14246447--14246691	42	5.7	42	82	6	233	29	17	26	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163