genome.fa.s4.2.7.7.80.10.50.1000.94.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  94  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30104222--30104362	43	3.3	43	88	2	230	22	18	33	25	1.97
30105496--30105553	29	2.0	30	82	3	73	22	32	24	20	1.98
30106629--30106676	25	1.9	25	82	0	60	22	6	2	68	1.23
30113473--30113513	8	5.0	8	85	5	55	82	0	4	12	0.81
30114261--30114301	8	5.0	8	85	5	55	82	0	4	12	0.81
30118534--30118652	42	2.8	42	76	0	121	21	21	24	31	1.98
30124005--30124034	12	2.5	12	88	0	51	6	23	40	30	1.80
30125263--30125341	25	3.2	24	77	12	97	32	17	25	24	1.97
30130847--30130944	27	3.6	27	87	4	126	28	13	25	32	1.93
30146111--30146167	21	2.7	21	86	0	78	12	14	35	38	1.83
30153938--30153976	20	2.0	20	85	5	53	48	2	2	46	1.29
30154341--30154386	23	2.0	23	86	4	65	56	0	6	36	1.25
30154353--30154386	11	3.0	11	83	8	50	61	0	2	35	1.11
30154406--30154491	28	3.0	28	77	17	88	54	5	1	38	1.32
30154422--30154452	14	2.1	15	94	5	55	67	0	0	32	0.91
30154422--30154464	14	3.1	14	81	15	54	62	2	0	34	1.08
30154882--30154924	22	2.0	22	85	0	59	69	9	9	11	1.36
30157828--30157976	74	2.0	74	93	0	253	39	14	10	36	1.79
30173718--30173869	69	2.2	69	85	4	200	21	23	20	35	1.96
30176474--30176556	25	3.3	25	77	0	94	36	25	14	24	1.93
30177410--30177475	33	2.0	33	96	0	123	45	15	13	25	1.83
30184505--30184542	20	2.1	18	85	14	51	39	0	7	52	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30185160--30185388	20	11.4	20	66	1	100	20	30	15	34	1.93
30185162--30185400	40	6.0	40	83	0	244	19	30	15	34	1.93
30185160--30185410	80	3.1	80	80	2	279	19	30	15	33	1.94
30185162--30185394	120	1.9	120	82	0	286	20	29	15	34	1.93
30185253--30185458	20	10.3	20	70	2	90	17	29	17	34	1.93
30191044--30191089	6	7.5	6	81	13	58	80	4	2	13	0.95
30191039--30191089	17	2.8	17	82	11	66	80	5	1	11	0.97
30197433--30197462	16	1.9	15	93	6	51	0	13	0	86	0.57
30203432--30203493	31	2.0	31	93	0	106	24	22	17	35	1.95
30205782--30205891	38	2.8	39	74	9	100	32	25	17	24	1.96
30205983--30206036	18	3.1	17	81	7	72	35	20	0	44	1.52
30207878--30207956	33	2.5	30	76	13	79	56	6	0	36	1.25
30208941--30208978	17	2.2	17	86	9	51	42	2	7	47	1.46
30209275--30209346	31	2.4	29	77	13	74	38	12	12	36	1.81
30209512--30209555	16	2.7	17	82	10	56	22	4	29	43	1.73
30211445--30211674	113	2.0	113	97	0	433	30	16	23	29	1.96
30212731--30212774	20	2.2	20	95	0	79	36	20	20	22	1.95
30213805--30213843	3	13.0	3	84	10	53	69	0	30	0	0.89
30218725--30218888	81	2.0	82	97	2	312	43	0	4	51	1.23
30219922--30219957	3	12.0	3	100	0	72	33	0	0	66	0.92
30239700--30239814	24	4.8	24	73	16	85	16	27	22	33	1.96
30239698--30239849	72	2.1	73	82	6	193	17	25	22	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30245787--30245841	10	5.6	10	74	18	53	32	0	0	67	0.91
30247408--30247543	4	34.0	4	100	0	272	50	25	0	25	1.50
30253697--30253759	26	2.4	27	83	5	83	38	14	20	26	1.91
30262687--30262931	122	2.0	123	99	0	483	41	13	9	35	1.77
30269570--30269612	21	2.2	19	91	8	68	18	4	20	55	1.60
30273651--30273683	16	2.0	17	88	5	50	48	0	3	48	1.17
30279795--30279893	23	4.3	23	90	0	162	29	27	21	22	1.99
30282195--30282224	11	2.8	11	95	5	53	40	10	10	40	1.72
30284062--30284094	16	2.0	17	88	5	50	48	0	3	48	1.17
30285445--30285475	9	3.4	9	90	0	53	38	9	0	51	1.35
30296664--30296702	17	2.2	19	86	9	55	46	5	2	46	1.38
30298358--30298409	14	3.5	14	75	14	59	44	1	0	53	1.11
30298359--30298423	31	2.1	32	97	2	123	41	3	0	55	1.15
30303000--30303094	49	1.9	49	82	4	120	44	8	16	30	1.78
30309334--30309436	28	3.9	27	71	12	88	40	12	0	45	1.49
30309324--30309427	51	2.0	51	96	0	190	37	10	0	50	1.43
30309674--30309737	3	21.7	3	96	3	121	32	0	0	67	0.91
30310388--30310447	31	1.9	31	96	0	111	55	5	15	25	1.60
30314544--30314652	50	2.2	49	79	12	109	63	0	34	0	1.07
30315118--30315159	22	2.0	22	86	9	61	28	2	4	64	1.26
30317310--30317372	33	1.9	33	83	0	81	19	36	15	28	1.92
30317660--30317830	62	2.7	63	79	6	186	46	11	8	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30320241--30320312	27	2.7	27	88	0	99	30	31	19	18	1.95
30327972--30328047	30	2.5	31	84	6	100	14	9	6	69	1.34
30329968--30330009	15	2.6	17	75	17	54	23	7	9	59	1.53
30340601--30340644	21	2.0	22	86	4	63	50	20	13	15	1.78
30352308--30352332	3	8.3	3	100	0	50	36	0	32	32	1.58
30352331--30352363	3	11.0	3	93	0	57	36	0	63	0	0.95
30353585--30353643	4	14.8	4	74	13	50	20	3	3	72	1.13
30354039--30354063	13	1.9	13	100	0	50	28	0	0	72	0.86
30358938--30358962	2	12.5	2	100	0	50	48	0	0	52	1.00
30361141--30361204	17	3.8	17	81	8	76	15	3	3	78	1.01
30361148--30361204	21	2.7	20	81	10	69	15	3	1	78	0.96
30367637--30367677	20	2.0	20	100	0	82	34	4	9	51	1.56
30371510--30371616	29	3.7	29	76	14	105	43	24	13	18	1.85
30371979--30372005	10	2.7	10	100	0	54	29	22	18	29	1.97
30383277--30383562	141	2.0	141	93	0	482	37	12	15	34	1.86
30384046--30384635	298	2.0	289	94	2	1027	37	17	9	35	1.83
30389281--30389411	43	3.1	42	80	5	147	27	17	24	30	1.97
30391194--30391257	26	2.4	27	92	5	103	25	18	21	34	1.96
30391194--30391373	29	6.3	29	76	9	140	26	14	21	38	1.91
30391223--30391373	59	2.6	57	83	8	196	25	13	21	40	1.89
30391214--30391450	29	8.2	28	73	7	134	24	13	22	39	1.90
30391214--30391484	57	4.7	57	74	6	201	25	13	22	38	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30400364--30400414	23	2.2	23	86	6	68	45	0	5	49	1.26
30401959--30401992	17	2.0	17	94	0	59	17	23	20	38	1.93
30406970--30407018	22	2.2	22	82	13	57	24	0	4	71	1.03
30408475--30408526	23	2.3	23	93	0	86	36	1	13	48	1.54
30408485--30408526	13	3.5	13	75	18	54	38	0	14	47	1.44
30409364--30409416	20	2.7	20	80	8	56	20	3	3	71	1.17
30410205--30410261	17	3.5	17	86	9	84	68	3	0	28	1.06
30410218--30410261	7	5.9	7	85	15	61	72	2	0	25	0.96
30425604--30425642	21	1.9	20	89	5	60	35	0	0	64	0.94
30428014--30428222	92	2.3	91	86	5	278	45	3	3	46	1.39
30428150--30428197	26	1.9	25	84	16	64	45	0	2	52	1.12
30428372--30428413	15	2.7	16	82	14	52	45	0	2	52	1.13
30428363--30428404	15	2.9	15	82	10	52	47	0	0	52	1.00
30430493--30430532	13	3.1	13	96	0	71	35	7	17	40	1.78
30431962--30432030	32	2.2	32	94	0	120	21	4	31	42	1.73
30437500--30437532	14	2.5	13	90	9	50	27	0	33	39	1.57
30439376--30439405	8	3.8	8	100	0	60	0	10	0	90	0.47
30439465--30439514	18	2.7	18	87	3	73	46	12	6	36	1.66
30440432--30440467	18	2.0	18	100	0	72	27	0	16	55	1.42
30442874--30442907	16	2.1	16	89	10	52	67	2	0	29	1.05
30444934--30444964	12	2.5	13	94	5	55	16	22	0	61	1.34
30454453--30454498	19	2.5	19	82	3	58	4	23	54	17	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30459352--30459383	14	2.2	15	94	5	57	28	3	6	62	1.34
30463162--30463193	15	2.1	15	94	5	55	84	0	0	15	0.63
30463161--30463191	9	3.3	9	91	8	53	87	0	0	12	0.55
30468170--30468194	2	12.5	2	100	0	50	52	0	0	48	1.00
30476979--30477015	16	2.4	15	90	4	56	62	5	2	29	1.31
30477303--30477362	3	19.7	3	74	16	52	61	3	3	31	1.28
30478195--30478236	20	2.0	21	86	4	59	47	2	7	42	1.43
30481535--30481577	19	2.2	20	87	4	61	44	11	6	37	1.68
30483665--30483732	34	2.0	34	88	5	102	29	10	22	38	1.87
30496521--30496578	18	3.2	17	74	16	55	51	0	24	24	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163