genome.fa.s4.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  157  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52430659--52430697	12	3.2	12	82	13	53	71	0	2	25	0.98
52432308--52432377	35	2.0	35	100	0	140	40	11	17	31	1.85
52437551--52437584	12	2.8	12	90	0	50	67	0	0	32	0.91
52438696--52438727	2	16.0	2	93	0	55	46	0	3	50	1.17
52442281--52442455	87	2.0	88	98	1	343	36	8	13	41	1.74
52445235--52445262	2	14.0	2	100	0	56	50	0	0	50	1.00
52459682--52459778	43	2.2	43	98	1	185	44	20	13	21	1.86
52473349--52473484	40	3.5	39	79	7	159	25	16	25	31	1.97
52479033--52479064	16	2.1	16	94	5	57	15	6	12	65	1.44
52479035--52479071	15	2.4	16	86	8	51	18	8	10	62	1.52
52492777--52492842	33	2.0	33	87	0	96	51	10	15	22	1.73
52494828--52494862	4	8.8	4	87	0	52	48	20	2	28	1.63
52494835--52494866	16	2.0	16	100	0	64	50	18	0	31	1.48
52508637--52508692	16	3.3	17	81	16	71	66	3	0	30	1.09
52516095--52516120	6	4.3	6	100	0	52	50	0	15	34	1.45
52522393--52522422	15	2.1	14	93	6	51	83	0	3	13	0.77
52530964--52530996	2	16.5	2	100	0	66	48	0	0	51	1.00
52540836--52540875	22	1.9	21	85	10	55	37	2	10	50	1.50
52541173--52541267	44	2.2	43	94	3	165	31	7	5	55	1.50
52542036--52542143	39	2.8	39	88	4	166	52	25	2	18	1.59
52542276--52542351	38	2.0	38	87	2	109	32	3	17	46	1.66
52553372--52553413	20	2.2	20	87	8	61	59	0	7	33	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52559744--52559888	72	2.0	73	98	1	283	45	19	2	32	1.64
52572428--52572469	16	2.6	16	82	14	50	69	2	0	28	1.01
52573343--52573690	173	2.0	174	99	0	689	33	18	17	29	1.95
52575071--52575202	40	3.3	40	78	12	148	31	21	18	28	1.97
52575059--52575202	78	1.9	77	89	7	229	31	21	18	29	1.97
52575071--52575202	41	3.3	41	74	15	134	31	21	18	28	1.97
52580331--52580370	19	2.1	19	86	9	55	52	0	0	47	1.00
52581032--52581072	21	2.0	21	85	9	57	41	0	2	56	1.13
52581761--52581795	17	2.1	17	89	5	54	25	0	0	74	0.82
52585013--52585050	19	2.0	19	94	0	67	57	0	7	34	1.28
52589490--52589550	21	3.0	20	83	7	70	31	1	4	62	1.26
52589685--52589728	22	2.0	21	83	12	54	63	4	18	13	1.46
52592250--52592282	7	4.9	7	92	7	59	69	0	0	30	0.88
52599668--52599720	19	2.8	17	76	18	52	22	20	3	52	1.62
52605192--52605220	6	4.8	6	100	0	58	31	0	0	68	0.89
52605468--52605493	6	4.3	6	100	0	52	30	0	0	69	0.89
52605179--52605741	273	2.1	273	97	1	1094	37	6	11	44	1.65
52606304--52606367	20	3.2	20	74	12	60	57	3	1	37	1.24
52613816--52613924	32	3.5	32	71	16	86	27	8	10	54	1.62
52613816--52613976	60	2.7	61	80	5	168	27	10	11	49	1.72
52637832--52637886	3	18.3	3	100	0	110	32	0	0	67	0.91
52646524--52646716	96	2.0	96	97	0	368	34	19	20	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52646997--52647093	46	2.0	50	86	9	139	64	11	5	18	1.43
52649224--52649270	15	3.2	14	77	16	51	29	2	2	65	1.15
52651667--52651702	18	2.0	18	100	0	72	22	16	0	61	1.35
52653553--52653739	46	4.0	46	87	4	277	44	13	11	29	1.80
52655976--52656009	17	1.9	17	88	5	50	50	2	5	41	1.42
52657769--52657829	4	15.2	4	83	6	70	44	26	4	24	1.74
52657779--52657829	23	2.2	24	89	3	77	43	27	5	23	1.77
52657772--52657826	27	2.0	29	89	7	87	41	27	5	25	1.77
52662717--52662856	69	2.0	69	100	0	280	24	27	17	30	1.97
52683559--52683699	57	2.4	59	80	11	155	28	22	24	24	2.00
52683821--52683952	67	2.0	67	93	0	228	19	16	34	29	1.94
52690055--52690189	71	1.9	71	81	0	162	17	15	21	45	1.84
52691095--52691174	21	3.8	21	83	0	97	8	8	57	25	1.57
52701919--52702066	74	2.0	74	95	0	269	44	16	13	25	1.84
52708482--52708533	24	2.2	24	85	0	68	53	5	3	36	1.43
52710389--52710440	24	2.2	24	85	0	68	53	5	5	34	1.49
52720956--52720993	3	13.0	3	94	5	69	0	31	0	68	0.90
52742305--52742354	21	2.5	19	80	6	55	66	2	6	26	1.26
52742845--52742940	19	4.8	19	72	19	63	33	1	5	60	1.26
52742894--52742940	19	2.5	19	85	0	67	29	2	2	65	1.15
52742917--52742974	19	3.0	19	82	2	62	27	0	3	68	1.05
52751161--52751226	30	2.2	30	86	0	87	22	10	22	43	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52751170--52751226	30	1.9	30	92	0	96	24	8	22	43	1.81
52751266--52751340	39	1.9	39	83	5	98	32	20	32	16	1.94
52769227--52769291	21	3.1	21	84	0	85	24	7	44	23	1.79
52769277--52769646	186	2.0	186	97	0	695	36	15	27	20	1.93
52769273--52769646	93	4.0	93	91	0	613	36	15	27	20	1.93
52770285--52770396	54	2.1	54	89	0	170	37	18	19	24	1.94
52771749--52772023	45	6.0	45	71	12	184	18	45	5	30	1.73
52771883--52772023	45	3.1	45	85	0	192	17	48	4	29	1.68
52771883--52772050	45	3.8	45	83	2	189	19	46	4	29	1.69
52772030--52772162	42	3.2	42	65	12	119	18	44	5	31	1.72
52772014--52772290	84	3.3	84	84	4	328	19	44	6	30	1.75
52772061--52772192	42	3.1	42	65	12	117	18	45	6	29	1.74
52772014--52772330	84	3.8	83	80	7	327	18	43	6	30	1.76
52772742--52772873	42	3.2	41	76	14	146	21	50	4	22	1.67
52772708--52772873	42	4.1	38	73	14	109	22	48	5	23	1.71
52772708--52772873	81	2.0	81	89	0	251	22	48	5	23	1.71
52772372--52773131	207	3.7	204	80	7	827	20	45	6	26	1.76
52773451--52773535	33	2.6	33	78	0	98	20	47	15	17	1.83
52773515--52773623	33	3.3	33	93	0	182	22	47	22	8	1.77
52773560--52773668	54	2.0	54	98	0	209	19	41	27	11	1.86
52773593--52773644	21	2.5	21	93	0	86	19	40	26	13	1.88
52774026--52774053	1	28.0	1	100	0	56	0	0	0	100	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52784262--52784304	22	2.0	22	81	9	52	69	6	11	11	1.35
52789408--52789432	13	1.9	13	100	0	50	20	8	8	64	1.46
52796467--52796515	23	2.0	23	84	7	62	53	2	2	42	1.24
52804191--52804283	46	2.0	46	100	0	186	32	15	10	41	1.81
52808460--52808490	3	10.7	3	93	6	55	70	0	0	29	0.87
52808458--52808487	14	2.1	14	100	0	60	73	0	0	26	0.84
52808460--52808492	17	1.9	17	100	0	66	72	0	0	27	0.85
52808480--52808615	68	2.0	68	97	0	254	46	9	6	37	1.63
52808603--52808646	9	5.1	9	83	10	65	54	11	0	34	1.36
52808612--52808649	16	2.4	16	90	0	58	52	10	0	36	1.36
52808719--52808760	16	2.6	16	92	0	66	42	7	2	47	1.43
52811671--52811736	34	1.9	34	87	6	98	33	7	15	43	1.74
52812523--52812603	28	2.9	28	81	0	90	38	28	11	22	1.88
52814899--52814948	22	2.4	21	80	9	66	40	4	4	52	1.39
52818992--52819124	9	15.4	9	77	12	136	31	0	22	45	1.58
52818985--52819118	25	5.3	25	76	12	139	31	0	22	45	1.58
52818958--52819124	34	4.9	33	79	8	165	31	0	20	46	1.56
52818956--52819124	43	3.9	43	77	8	150	31	0	21	46	1.56
52821653--52821708	21	2.6	21	85	2	76	35	35	1	26	1.67
52821660--52821705	7	6.4	7	82	5	56	32	39	0	28	1.57
52821653--52821708	14	3.9	14	79	9	60	35	35	1	26	1.67
52821992--52822074	39	2.1	39	82	4	96	53	19	2	25	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52822558--52822878	175	1.8	176	85	0	455	25	24	22	27	2.00
52829126--52829169	23	2.0	22	86	4	61	31	0	0	68	0.90
52839169--52839393	63	3.7	60	78	12	201	29	31	18	20	1.96
52844445--52844484	21	1.9	21	84	0	53	50	5	7	37	1.53
52847333--52847630	63	4.8	63	78	6	288	29	33	18	18	1.95
52847333--52847630	126	2.4	123	82	5	345	29	33	18	18	1.95
52848210--52848234	7	3.6	7	100	0	50	12	0	0	88	0.53
52848382--52848426	19	2.3	19	88	3	63	60	0	2	37	1.09
52849771--52849825	3	18.3	3	100	0	110	0	32	0	67	0.91
52850718--52850843	60	2.2	60	80	9	145	41	16	17	24	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163