genome.fa.s4.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  33  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10638939--10639129	50	3.7	50	80	4	193	24	27	20	26	1.99
10638887--10639136	50	4.9	50	76	8	159	25	27	20	27	1.99
10640502--10640540	15	2.7	15	88	4	62	46	7	5	41	1.55
10643543--10643584	23	1.9	21	90	9	66	23	9	14	52	1.71
10652164--10652341	46	3.8	46	74	5	128	30	20	20	28	1.98
10652168--10652337	93	1.8	93	85	2	243	28	20	21	29	1.98
10652186--10652339	46	3.3	46	77	1	155	30	20	21	27	1.98
10659789--10660027	51	4.7	50	71	9	180	28	13	28	30	1.94
10659784--10660027	102	2.4	102	86	5	343	27	14	27	29	1.95
10673662--10673737	26	2.9	26	76	0	80	34	15	9	40	1.79
10685049--10685091	16	2.7	16	74	0	50	23	13	16	46	1.83
10702070--10702115	17	2.8	16	83	12	58	6	19	2	71	1.18
10724180--10724397	108	2.0	108	100	0	436	39	12	16	31	1.86
10724908--10725206	63	4.8	63	82	4	352	37	8	24	29	1.86
10724908--10725184	125	2.2	126	85	3	362	37	8	23	29	1.85
10730303--10730348	23	2.0	23	83	8	58	21	8	21	47	1.77
10739600--10739668	34	2.0	36	83	11	90	14	5	30	49	1.67
10751628--10751667	19	2.1	19	86	9	55	37	15	5	42	1.68
10752904--10752981	27	3.0	26	77	17	81	20	23	21	34	1.97
10755692--10755732	20	2.1	19	90	4	64	48	7	7	36	1.59
10756062--10756094	9	3.8	9	88	4	50	51	3	0	45	1.16
10768543--10768581	20	2.0	20	100	0	78	10	25	20	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10768544--10768588	20	2.3	20	92	3	74	13	28	15	42	1.85
10775119--10775159	20	2.1	19	86	4	55	41	4	7	46	1.53
10796781--10796813	15	2.2	15	100	0	66	48	6	6	39	1.53
10801891--10801915	13	1.9	13	100	0	50	84	16	0	0	0.63
10801824--10802018	96	2.0	97	98	1	383	58	14	2	24	1.46
10801987--10802011	13	1.9	13	100	0	50	84	16	0	0	0.63
10819576--10819605	12	2.5	12	94	0	51	36	6	0	56	1.26
10822647--10822678	3	10.7	3	100	0	64	31	0	34	34	1.58
10824850--10824899	20	2.5	20	80	9	57	38	12	12	38	1.80
10824982--10825019	20	1.9	20	94	0	67	26	28	0	44	1.54
10829795--10830034	50	4.7	50	80	6	234	27	20	27	23	1.99
10836226--10836467	50	4.7	50	77	7	168	26	20	28	23	1.99
10843419--10843467	20	2.7	18	77	22	57	51	2	2	44	1.24
10844327--10844412	43	2.0	43	100	0	172	37	13	6	41	1.72
10846432--10846488	20	2.8	21	76	7	55	22	28	0	49	1.50
10847188--10847450	138	1.9	137	81	0	319	33	25	21	19	1.97
10850472--10850700	28	8.3	28	88	1	293	27	23	25	23	2.00
10857572--10857678	26	4.1	26	90	0	151	37	21	20	20	1.95
10857931--10858269	27	12.6	27	85	2	369	19	19	18	42	1.90
10857901--10858134	81	2.9	81	84	3	222	18	19	20	41	1.91
10857931--10858269	81	4.2	81	84	2	412	19	19	18	42	1.90
10866468--10866499	12	2.7	12	95	0	55	46	15	18	18	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10868381--10868410	14	2.1	14	93	0	51	10	6	13	70	1.34
10878659--10878688	14	2.1	14	93	0	51	10	6	13	70	1.34
10880444--10880503	16	3.8	16	76	12	61	41	5	1	51	1.33
10880430--10880504	16	4.7	16	71	12	55	44	4	1	50	1.29
10881300--10881345	5	9.2	5	90	0	74	0	23	0	76	0.79
10883115--10883191	26	2.9	26	88	1	109	35	9	28	27	1.87
10894625--10894962	51	6.7	51	80	4	362	28	15	26	28	1.96
10894625--10894968	102	3.4	101	87	3	453	29	15	26	28	1.96
10899928--10899953	7	3.7	7	100	0	52	0	0	26	73	0.84
10901816--10901849	15	2.3	15	90	5	52	2	5	23	67	1.26
10904263--10904304	15	2.9	15	82	10	52	47	0	0	52	1.00
10924027--10924128	48	2.1	48	87	7	145	39	0	48	11	1.47
10924164--10924230	30	2.2	30	78	0	71	35	11	23	28	1.91
10924258--10924295	20	1.9	20	94	0	67	31	7	26	34	1.85
10925755--10925841	39	2.3	38	85	2	111	25	35	12	26	1.92
10928864--10928917	14	4.0	14	73	7	58	64	1	0	33	1.04
10928866--10928909	22	2.0	23	86	4	63	65	2	0	31	1.05
10929367--10929408	21	2.0	20	90	4	66	50	9	7	33	1.62
10932333--10932442	54	2.0	54	87	7	157	43	6	20	29	1.77
10932343--10932458	54	2.1	57	80	4	130	50	5	19	25	1.68
10937154--10937202	26	1.9	26	87	4	73	26	4	18	51	1.64
10937655--10937681	10	2.7	10	100	0	54	29	7	0	62	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10943236--10943273	20	1.9	20	84	10	51	57	0	10	31	1.32
10953023--10953084	30	2.1	30	84	6	81	35	11	8	45	1.70
10953142--10953188	22	2.3	19	85	14	58	44	2	0	53	1.12
10953144--10953185	16	2.7	15	79	20	50	45	2	0	52	1.13
10962560--10962589	9	3.3	9	90	0	51	56	6	0	36	1.26
10962577--10962632	29	1.9	29	85	0	76	44	14	8	32	1.76
10964613--10964808	50	3.8	50	82	5	196	26	20	29	22	1.99
10972315--10973530	96	12.4	96	90	6	1841	37	14	7	40	1.74
10973085--10973530	159	2.8	158	95	2	772	38	15	6	39	1.74
10978565--10978749	50	3.7	50	84	2	246	27	22	27	22	1.99
10979399--10979467	35	2.0	35	94	0	120	33	13	31	21	1.92
10984151--10984230	38	2.1	38	92	0	133	32	6	17	43	1.74
10985159--10985337	50	3.6	50	81	6	209	30	21	26	21	1.98
10987300--10987358	30	2.0	29	83	9	75	57	8	13	20	1.62
11005546--11005786	49	4.8	49	75	5	169	22	27	21	28	1.99
11006496--11006520	11	2.3	11	100	0	50	76	8	0	16	1.02
11012908--11012953	20	2.3	20	79	17	60	13	23	6	56	1.60
11017208--11017274	21	3.3	21	74	18	70	26	35	4	32	1.77
11024567--11024596	14	2.1	14	93	0	51	76	6	6	10	1.15
11025691--11025798	55	2.0	55	81	0	126	33	18	21	26	1.96
11026842--11026879	19	2.0	19	85	10	51	21	42	0	36	1.53
11036254--11036291	19	2.0	19	85	10	51	21	42	0	36	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11043337--11043387	25	2.0	25	100	0	102	43	19	29	7	1.79
11047369--11047423	27	2.0	27	92	0	92	34	25	18	21	1.96
11053478--11053553	11	6.6	11	83	8	89	36	51	3	7	1.50
11053468--11053529	22	2.8	22	90	4	74	38	50	1	9	1.45
11053489--11053564	36	2.1	36	90	0	116	35	51	2	10	1.50
11053478--11053553	22	3.3	22	82	10	98	36	51	3	7	1.50
11055806--11055863	25	2.3	25	82	5	64	67	10	5	17	1.38
11057759--11057805	14	3.3	14	82	5	58	51	4	2	42	1.33
11062149--11062207	29	2.1	29	87	3	84	32	6	8	52	1.58
11063041--11063114	3	25.3	3	91	5	125	0	32	1	66	1.00
11068510--11068655	43	3.5	42	78	8	145	36	24	17	21	1.94
11068510--11068655	42	3.5	42	78	6	152	36	24	17	21	1.94
11068662--11068769	40	2.7	41	91	2	182	21	25	20	33	1.97
11068594--11068725	67	2.0	68	83	7	171	28	27	18	25	1.98
11068914--11068990	38	2.0	38	100	0	154	51	10	19	18	1.74
11070056--11070132	23	3.3	23	87	0	109	48	11	1	38	1.48
11078750--11078808	27	2.2	27	81	6	66	59	11	0	28	1.33
11083267--11083299	11	3.3	10	88	12	50	15	3	0	81	0.80
11083883--11083918	3	12.0	3	100	0	72	33	0	0	66	0.92
11084153--11084185	10	3.4	10	87	4	50	30	0	0	69	0.88
11090644--11090692	20	2.5	19	84	12	64	18	20	8	53	1.70
11090737--11090777	21	2.0	21	85	9	57	39	17	12	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11098800--11098844	23	2.0	22	87	8	65	22	22	6	48	1.73
11100557--11100605	20	2.5	20	72	0	53	34	22	24	18	1.96
11103510--11103620	55	2.0	54	94	1	195	41	20	15	22	1.90
11104963--11105019	20	2.8	20	89	0	78	22	29	0	47	1.52
11105669--11105968	40	7.6	40	87	2	363	45	27	13	13	1.81
11118936--11118990	21	2.6	22	82	8	78	25	7	38	29	1.83
11123608--11123765	45	3.5	45	80	1	201	27	25	15	31	1.96
11123608--11123774	89	1.9	89	93	0	289	28	26	15	29	1.96
11136521--11136579	30	2.0	30	83	12	77	28	15	27	28	1.96
11136451--11136621	66	2.6	66	75	9	150	30	12	26	30	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163