genome.fa.s4.2.7.7.80.10.50.1000.37.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  37  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12113685--12113728	20	2.2	20	87	0	61	50	9	9	31	1.65
12115043--12115137	24	3.9	25	79	16	110	18	24	18	37	1.94
12115045--12115163	49	2.4	50	81	13	140	19	24	21	35	1.96
12115130--12115188	25	2.4	25	94	0	109	18	25	27	28	1.98
12115044--12115187	73	2.0	74	81	4	175	19	23	22	34	1.96
12124363--12124405	21	2.2	20	83	8	52	46	2	30	20	1.63
12125680--12125790	23	5.0	23	75	5	111	18	20	18	42	1.90
12138251--12138279	3	9.7	3	100	0	58	31	0	0	68	0.89
12140374--12140408	17	2.0	18	88	5	54	22	0	11	65	1.24
12144213--12144240	3	9.3	3	100	0	56	67	0	0	32	0.91
12147004--12147038	18	1.9	18	88	0	52	60	0	22	17	1.37
12149923--12149984	21	3.2	20	72	14	58	33	6	4	54	1.47
12150479--12150527	21	2.3	23	79	13	59	20	40	0	38	1.53
12150685--12150817	50	2.7	50	85	1	187	39	18	23	18	1.93
12177906--12177931	5	5.2	5	100	0	52	80	0	0	19	0.71
12180146--12180203	3	19.3	3	100	0	116	67	0	0	32	0.91
12180793--12180852	30	2.0	31	86	3	86	20	40	0	40	1.52
12181868--12181909	21	2.0	21	95	0	75	26	23	26	23	2.00
12181978--12182018	3	14.0	3	94	5	75	65	0	34	0	0.93
12196934--12196986	7	7.4	8	76	20	55	81	0	16	1	0.79
12196938--12196992	5	11.4	5	75	14	53	81	0	16	1	0.77
12196934--12196993	14	4.1	14	80	16	61	81	0	16	1	0.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12196921--12196994	22	3.6	20	74	16	71	81	1	14	2	0.88
12197841--12197905	24	2.7	24	95	0	112	35	15	26	23	1.94
12198291--12198948	44	14.8	44	67	12	232	30	21	24	23	1.99
12198337--12198945	87	6.8	87	71	11	367	30	22	24	23	1.99
12198189--12198639	232	1.9	233	91	1	735	31	21	23	23	1.98
12198741--12198986	43	5.7	43	71	9	212	29	23	24	22	1.99
12198516--12198968	87	5.2	87	79	6	497	29	22	24	24	1.99
12198976--12199172	44	4.5	44	71	8	120	32	20	21	24	1.97
12198515--12199027	174	2.9	172	78	7	534	30	21	24	23	1.99
12199003--12199159	85	1.8	85	84	8	212	28	21	22	28	1.99
12200663--12200702	3	13.3	3	100	0	80	32	0	32	35	1.58
12201000--12201033	3	11.0	3	93	6	59	35	0	0	64	0.94
12201388--12201436	20	2.5	19	87	6	71	36	10	2	51	1.48
12211983--12212055	36	2.0	36	100	0	146	34	13	19	32	1.91
12214534--12214596	21	3.0	21	88	2	90	19	22	6	52	1.68
12214770--12214836	29	2.4	28	82	12	75	31	5	5	56	1.47
12219716--12219822	32	3.4	32	82	1	135	40	19	18	21	1.92
12219963--12220044	24	3.4	24	87	0	110	50	21	6	21	1.71
12219963--12220071	24	4.5	24	85	0	92	49	20	6	23	1.72
12220090--12220423	27	12.4	27	74	11	238	20	20	20	38	1.94
12220090--12220423	54	6.2	53	79	5	314	20	20	20	38	1.94
12220106--12220423	81	3.9	79	82	6	300	20	20	21	38	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12220773--12220815	17	2.4	17	80	7	50	20	44	20	13	1.86
12231867--12231928	28	2.2	28	97	0	115	24	43	11	20	1.85
12235170--12235589	76	5.5	76	80	2	439	25	19	21	34	1.96
12235337--12235477	36	3.8	36	70	10	122	23	21	23	31	1.98
12235371--12235589	40	5.7	39	64	12	103	25	20	21	32	1.97
12235169--12235589	152	2.8	152	83	0	502	25	19	21	34	1.96
12235175--12235589	228	1.8	228	82	2	528	25	19	21	34	1.96
12242004--12242085	39	2.1	39	97	0	155	26	24	24	24	2.00
12246906--12246952	16	2.7	17	80	9	51	34	6	6	53	1.52
12250903--12250948	24	1.9	24	86	0	65	45	17	26	10	1.81
12258926--12259612	45	15.9	44	70	15	258	28	18	23	29	1.98
12258970--12259611	172	3.7	172	87	4	879	28	18	23	29	1.98
12259144--12259607	216	2.1	214	80	7	492	27	18	24	29	1.98
12261216--12261262	16	2.7	17	80	9	51	34	6	6	53	1.52
12264142--12264264	60	2.0	60	100	0	246	8	39	3	49	1.49
12265290--12265405	27	4.3	27	75	10	112	47	19	15	17	1.83
12265290--12265420	27	4.8	26	74	13	104	46	19	16	17	1.84
12265282--12265420	54	2.6	54	84	6	158	46	18	16	17	1.84
12265759--12265850	28	3.3	28	92	0	139	25	28	21	25	1.99
12265778--12265887	28	3.6	33	84	11	98	24	29	21	24	1.99
12273202--12273250	18	2.7	18	84	6	64	38	16	4	40	1.67
12279762--12279809	25	1.9	25	82	0	60	35	16	12	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12280847--12280871	13	1.9	13	100	0	50	40	16	28	16	1.89
12289684--12289736	18	2.9	20	76	18	62	39	5	28	26	1.79
12290506--12290537	13	2.5	13	94	0	55	18	34	9	37	1.83
12291207--12291468	36	7.2	36	79	10	140	37	16	21	24	1.93
12291261--12291534	109	2.5	106	81	11	288	37	15	21	25	1.93
12291261--12291556	146	2.0	144	82	7	357	37	15	21	25	1.93
12291261--12291585	73	4.5	73	78	8	297	37	14	21	26	1.92
12291261--12291556	36	8.1	36	77	12	248	37	15	21	25	1.93
12292876--12292907	17	1.9	16	93	6	55	15	18	37	28	1.92
12298635--12298665	14	2.1	15	94	5	55	29	0	0	70	0.87
12300870--12300901	15	2.1	16	94	5	57	40	6	9	43	1.62
12306756--12306782	13	2.1	13	100	0	54	14	0	14	70	1.17
12332232--12332269	18	2.2	18	85	4	51	42	2	5	50	1.39
12333320--12333375	20	2.8	20	83	2	69	32	5	7	55	1.50
12334038--12334160	65	1.9	65	84	1	165	38	8	6	47	1.59
12334096--12334292	87	2.3	87	80	7	213	36	11	7	45	1.68
12334248--12334519	82	3.4	80	81	5	282	28	13	11	46	1.78
12334323--12334539	77	2.7	78	82	4	249	27	11	12	47	1.76
12338142--12338196	24	2.3	24	74	0	56	23	27	14	34	1.94
12348967--12349208	50	4.8	50	74	11	158	30	28	16	23	1.97
12348965--12349204	101	2.4	101	81	1	266	30	27	17	24	1.97
12354267--12354332	27	2.4	27	82	5	80	22	21	34	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12356968--12357000	15	2.2	15	100	0	66	33	27	6	33	1.81
12357401--12357449	21	2.3	22	89	7	82	59	10	2	28	1.41
12357578--12357623	17	2.8	17	81	15	60	0	26	0	73	0.83
12357736--12357800	27	2.4	27	78	0	76	16	27	23	32	1.96
12360692--12360741	26	2.0	25	84	7	66	66	6	0	28	1.15
12362212--12362317	53	2.0	53	96	0	194	5	20	15	58	1.57
12365419--12365451	14	2.3	15	94	5	59	39	3	0	57	1.14
12367624--12367936	105	3.0	104	85	5	391	45	11	15	28	1.80
12371900--12371964	7	9.3	7	75	18	55	40	1	1	56	1.18
12371913--12371954	22	2.0	21	90	4	66	40	0	2	57	1.12
12371909--12371967	24	2.4	24	85	5	73	38	0	1	59	1.08
12371906--12371967	12	5.2	12	74	16	58	38	0	1	59	1.07
12371905--12371962	31	1.9	30	86	10	82	39	0	1	58	1.08
12379784--12379942	43	3.7	43	77	9	157	28	28	17	25	1.98
12379787--12379941	84	1.8	84	81	8	190	28	28	17	25	1.97
12382979--12383021	21	2.0	21	90	0	68	48	16	6	27	1.71
12384652--12384816	42	3.9	43	79	5	167	24	20	20	34	1.96
12384655--12384818	84	2.0	84	80	4	188	23	20	20	35	1.96
12385198--12385248	21	2.4	21	90	0	75	1	47	15	35	1.57
12394139--12394206	21	3.1	21	77	8	66	11	23	10	54	1.67
12394425--12394986	290	1.9	291	81	5	666	33	24	13	28	1.93
12411526--12411562	9	4.1	9	92	0	65	45	13	10	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12413465--12413554	30	3.0	30	69	18	96	33	5	7	53	1.53
12414707--12414967	130	2.0	131	99	0	515	35	12	18	33	1.88
12418767--12418801	16	2.4	14	90	9	52	48	2	0	48	1.16
12420257--12420323	28	2.4	27	75	9	64	58	13	13	14	1.64
12425182--12425246	32	2.0	32	96	0	121	24	13	9	52	1.70
12426196--12426346	74	2.0	74	94	0	266	15	17	6	60	1.56
12435602--12436715	94	11.9	94	83	3	1211	32	19	19	28	1.96
12435602--12436671	187	5.7	188	86	2	1298	31	19	20	29	1.96
12435602--12436664	50	22.8	44	67	18	257	31	19	19	29	1.96
12436496--12436679	43	4.1	43	69	16	131	30	19	22	27	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163