genome.fa.s4.2.7.7.80.10.50.1000.51.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  51  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16410376--16410415	21	1.9	21	84	0	53	30	10	32	27	1.89
16413332--16413390	25	2.3	27	82	11	70	66	11	1	20	1.33
16419419--16419699	43	6.6	43	84	2	332	35	14	19	30	1.92
16419419--16419693	128	2.1	128	85	2	372	34	15	19	30	1.93
16419767--16419839	38	1.9	38	85	0	101	34	16	16	32	1.91
16426760--16426826	21	3.1	22	70	12	59	46	0	2	50	1.16
16428037--16428086	26	2.0	24	88	7	73	54	0	0	46	1.00
16428037--16428105	28	2.5	26	77	13	66	50	0	2	46	1.16
16429204--16429289	21	4.0	22	80	8	106	17	22	23	37	1.94
16431514--16431548	18	1.9	18	94	0	61	37	11	2	48	1.54
16432842--16432900	3	19.7	3	76	13	59	59	1	0	38	1.08
16437227--16437342	40	3.0	40	82	5	139	35	21	19	23	1.96
16437397--16437598	41	5.0	41	88	0	289	19	21	29	29	1.98
16438046--16438078	14	2.3	15	94	5	59	30	0	33	36	1.58
16438297--16438342	14	3.3	14	84	0	56	23	0	43	32	1.54
16438291--16438342	21	2.5	21	78	6	61	26	0	40	32	1.57
16443599--16443689	43	2.1	43	87	2	130	35	10	9	43	1.73
16443965--16444168	42	4.8	42	84	7	252	20	17	33	28	1.95
16446839--16446890	17	3.1	16	83	8	59	71	1	23	3	1.13
16449393--16449442	26	2.0	25	84	4	64	56	2	10	32	1.44
16449414--16449455	22	1.9	22	85	0	57	52	2	7	38	1.42
16452546--16452602	23	2.5	23	91	0	96	21	0	15	63	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16458463--16458489	2	13.5	2	100	0	54	0	48	0	51	1.00
16463224--16463259	18	2.0	18	89	10	56	33	0	0	66	0.92
16463099--16463346	128	1.9	127	83	5	322	36	11	18	33	1.87
16465685--16465755	35	2.0	35	94	0	124	42	8	21	28	1.82
16472042--16472189	78	1.9	78	81	2	181	31	13	11	43	1.80
16481427--16481478	26	2.0	26	96	0	95	28	26	9	34	1.88
16484872--16484910	18	2.2	17	86	13	53	30	2	20	46	1.64
16485135--16485226	23	4.0	23	82	0	121	22	19	25	32	1.97
16487461--16487576	48	2.4	46	78	10	117	40	8	17	33	1.80
16497854--16497892	16	2.4	16	86	0	51	51	2	5	41	1.38
16497825--16497880	22	2.5	23	85	2	78	55	1	0	42	1.10
16498761--16498809	19	2.4	21	83	10	57	73	6	2	18	1.14
16498863--16498925	27	2.3	27	91	0	99	11	31	33	23	1.90
16499739--16499778	17	2.4	16	83	4	53	20	0	5	75	0.99
16499703--16499783	29	2.9	27	78	8	90	22	0	8	69	1.16
16510438--16510480	22	1.9	23	90	4	70	27	4	0	67	1.10
16518545--16518902	130	2.8	130	82	5	447	33	16	11	37	1.85
16523962--16523992	16	1.9	16	93	0	53	41	0	19	38	1.51
16525657--16525699	22	2.0	22	86	9	61	53	0	4	41	1.21
16527044--16527086	21	2.1	21	87	8	63	16	4	23	55	1.59
16528287--16528316	15	1.9	16	93	6	53	53	0	6	40	1.27
16528425--16528460	13	2.8	13	86	0	54	58	0	5	36	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16529014--16529055	14	3.1	14	82	3	59	69	4	2	23	1.20
16529018--16529069	22	2.4	22	76	0	59	67	9	1	21	1.29
16529509--16529852	134	2.5	135	81	4	356	22	15	13	48	1.80
16534648--16534680	16	2.0	17	88	5	50	33	24	0	42	1.55
16545176--16545223	13	3.7	13	77	0	51	25	22	27	25	2.00
16545160--16545249	26	3.5	26	85	0	108	25	25	24	24	2.00
16545183--16545252	13	5.4	13	67	6	52	28	21	25	24	1.99
16545466--16545526	19	3.1	19	84	13	63	63	1	4	29	1.24
16545477--16545526	19	2.4	21	90	9	77	60	0	6	34	1.21
16565456--16565501	23	2.0	23	100	0	92	34	8	21	34	1.84
16567775--16567804	5	6.0	5	100	0	60	20	0	0	80	0.72
16568752--16568820	29	2.3	30	82	7	79	69	7	11	11	1.36
16569606--16569651	17	2.8	18	84	15	64	28	41	30	0	1.56
16570778--16570818	14	2.9	15	78	7	50	36	4	17	41	1.71
16570787--16570853	34	1.9	35	87	3	100	32	7	13	46	1.71
16570832--16570918	33	2.7	32	74	15	88	26	9	19	44	1.80
16574762--16574787	12	2.2	12	100	0	52	7	15	30	46	1.74
16574916--16575210	112	2.6	114	83	5	368	23	22	26	27	2.00
16575222--16576161	147	6.2	146	76	13	935	45	14	15	25	1.83
16575659--16576155	137	3.5	140	84	12	632	42	14	17	25	1.87
16575321--16575937	328	1.9	332	95	3	1116	45	14	15	25	1.83
16575817--16576081	134	2.0	134	92	3	442	44	13	15	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16576899--16576938	14	2.9	14	84	0	53	22	0	45	32	1.53
16578761--16578803	20	2.2	20	100	0	86	32	4	20	41	1.73
16578812--16578841	13	2.3	13	100	0	60	16	13	13	56	1.67
16579724--16579972	85	2.9	84	85	2	327	26	19	26	27	1.99
16579724--16579968	128	1.9	128	88	1	375	27	20	26	26	1.99
16579724--16579972	43	5.8	43	82	1	322	26	19	26	27	1.99
16584402--16584886	40	11.9	40	85	10	671	23	21	25	28	1.99
16584401--16584879	82	5.9	82	89	6	735	24	21	25	28	1.99
16584402--16584986	122	4.9	122	92	5	879	23	20	26	28	1.99
16584783--16584986	107	1.9	107	95	0	372	24	18	28	28	1.98
16584889--16585012	40	3.1	38	71	19	90	23	19	25	31	1.98
16585640--16586712	82	13.1	82	99	0	2137	21	21	26	29	1.99
16586766--16587632	100	8.7	100	88	1	1238	24	21	23	31	1.98
16587912--16587969	24	2.4	24	91	0	89	32	25	8	32	1.86
16588442--16588623	97	1.9	93	86	6	258	47	9	15	27	1.76
16588953--16588997	23	2.0	22	83	12	56	0	13	4	82	0.82
16589431--16589473	10	4.3	10	77	11	52	0	6	9	83	0.80
16589432--16589481	19	2.7	17	80	19	64	0	6	12	82	0.85
16589432--16589493	26	2.4	26	82	12	74	0	4	14	80	0.87
16592223--16592267	19	2.3	20	88	7	67	37	8	22	31	1.85
16595040--16595072	16	2.0	17	88	5	50	81	3	0	15	0.80
16596125--16596794	334	2.0	335	99	0	1315	27	14	20	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16596929--16597006	38	2.0	39	92	2	131	16	16	20	46	1.85
16598107--16598175	24	2.9	24	69	16	61	40	5	8	44	1.59
16598228--16598320	45	2.1	44	90	6	143	38	24	3	33	1.72
16598302--16598357	16	3.5	16	87	0	85	26	26	7	39	1.82
16604391--16604430	21	1.9	21	100	0	80	25	17	10	47	1.78
16613426--16613883	47	9.7	47	92	1	630	24	12	19	43	1.86
16613426--16613883	190	2.4	187	87	3	630	24	12	19	43	1.86
16616817--16616853	18	2.1	18	100	0	74	16	21	27	35	1.94
16618707--16618740	16	2.2	15	89	5	50	44	0	0	55	0.99
16620256--16620280	3	8.3	3	100	0	50	68	0	32	0	0.90
16624353--16624396	17	2.5	17	82	10	54	31	15	2	50	1.57
16624776--16624854	24	3.2	24	71	8	70	35	22	24	17	1.95
16630620--16630667	24	2.0	24	83	0	60	43	10	16	29	1.81
16631665--16632470	298	2.7	297	80	5	808	37	11	9	41	1.73
16633882--16633920	19	2.1	19	85	9	53	71	0	2	25	0.98
16633884--16633918	18	1.9	19	88	11	56	74	0	2	22	0.95
16656808--16656848	21	1.9	22	85	5	57	53	14	14	17	1.73
16657715--16657747	16	2.1	16	94	0	57	36	0	3	60	1.12
16659099--16659162	22	2.9	22	86	6	76	75	1	10	12	1.13
16659097--16659154	11	5.6	10	75	13	55	75	1	12	10	1.11
16670076--16670145	29	2.3	29	85	4	86	22	14	15	47	1.82
16670543--16670567	11	2.3	11	100	0	50	68	0	16	16	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16676045--16676085	21	2.0	21	85	0	55	26	12	21	39	1.89
16677686--16677720	17	2.1	17	100	0	70	37	22	11	28	1.89
16679214--16679262	12	4.1	12	86	0	62	53	8	0	38	1.31
16679950--16679989	20	2.0	20	85	9	55	2	15	5	77	1.04
16681846--16681885	20	2.0	20	90	0	62	50	12	10	27	1.72
16682765--16682801	2	18.5	2	100	0	74	51	0	48	0	1.00
16684744--16684939	41	4.8	41	92	1	288	19	20	31	28	1.97
16685060--16685361	161	1.9	158	94	3	534	23	1	25	49	1.58
16685356--16685387	14	2.3	14	100	0	64	18	0	40	40	1.51
16685910--16685940	13	2.5	13	94	5	55	58	0	0	41	0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163