genome.fa.s4.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  146  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48150750--48150802	21	2.5	22	81	6	56	50	26	0	22	1.49
48152819--48152885	31	2.1	32	94	2	118	43	34	1	20	1.61
48159743--48159794	26	2.0	26	92	0	86	19	9	28	42	1.82
48172085--48172142	22	2.6	22	74	15	57	32	1	6	58	1.35
48172183--48172214	16	2.0	16	93	0	55	28	6	9	56	1.55
48172209--48172254	24	1.9	24	82	8	58	30	0	4	65	1.12
48185357--48185411	26	2.1	26	100	0	110	30	3	30	34	1.75
48186534--48186577	17	2.4	18	88	7	63	61	2	2	34	1.21
48186931--48186994	10	6.6	9	76	15	56	37	3	3	56	1.31
48186931--48186994	19	3.3	19	72	14	58	37	3	3	56	1.31
48186994--48187037	21	2.0	22	82	4	54	52	4	2	40	1.34
48187431--48187460	16	1.9	16	93	6	53	60	13	6	20	1.55
48188520--48188562	4	10.8	4	89	0	68	30	0	23	46	1.52
48191536--48191598	31	2.0	32	87	3	92	19	1	41	38	1.61
48201764--48201811	21	2.3	21	85	0	60	43	20	35	0	1.52
48202288--48202643	85	4.2	84	85	5	464	24	19	21	33	1.97
48202288--48202643	43	8.3	42	85	4	446	24	19	21	33	1.97
48206016--48207055	69	15.1	69	97	0	1879	31	7	2	58	1.39
48207026--48207082	27	2.3	26	80	16	68	22	7	3	66	1.31
48207033--48207108	4	19.2	4	71	12	50	23	6	2	67	1.27
48207068--48207093	11	2.4	11	100	0	52	19	0	0	80	0.71
48209318--48209377	9	6.6	9	76	16	61	85	6	3	5	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48209320--48209403	26	3.2	25	80	14	82	82	8	3	5	0.95
48209327--48209396	19	3.8	18	80	14	63	81	8	4	5	0.98
48209354--48209402	19	2.6	19	81	18	66	79	8	4	8	1.04
48209318--48209403	18	4.7	18	76	21	72	82	8	3	5	0.93
48209354--48209404	20	2.7	20	81	9	70	78	9	3	7	1.07
48210904--48211357	235	1.9	233	91	0	746	33	16	19	29	1.94
48211318--48211419	44	2.3	44	83	3	116	26	26	20	26	1.99
48212970--48213013	20	2.2	20	87	0	61	31	0	2	65	1.05
48213392--48213851	247	1.9	247	79	8	535	30	19	16	33	1.94
48214110--48214160	26	2.0	26	96	0	93	21	9	29	39	1.85
48224311--48224356	21	2.3	19	85	14	58	39	2	2	56	1.24
48227845--48227869	12	2.1	12	100	0	50	52	0	8	40	1.31
48228678--48228929	33	7.6	33	98	0	477	21	0	36	42	1.53
48228891--48228993	54	1.9	54	94	2	181	16	0	34	48	1.47
48229220--48229265	21	2.2	21	84	0	56	8	26	36	28	1.86
48229522--48229564	18	2.4	18	88	0	59	44	9	27	18	1.80
48230210--48230235	7	3.7	7	100	0	52	57	15	0	26	1.38
48231127--48231161	17	2.0	17	88	5	52	42	0	2	54	1.15
48231251--48231292	11	3.8	11	90	0	57	45	2	28	23	1.66
48231251--48231292	22	1.9	22	90	0	66	45	2	28	23	1.66
48238135--48238554	82	5.0	82	70	14	275	24	20	22	32	1.98
48238144--48238676	40	12.8	40	71	12	290	24	19	22	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48238221--48238675	127	3.6	127	95	1	790	24	19	22	33	1.97
48238261--48238628	44	8.7	43	66	14	181	24	19	22	33	1.97
48238756--48238925	50	3.4	50	68	3	144	24	20	24	31	1.98
48238695--48238954	100	2.6	100	87	0	358	24	21	23	31	1.98
48239016--48239361	88	3.9	88	81	4	342	30	26	16	26	1.96
48239003--48239292	132	2.2	133	85	3	399	29	26	16	27	1.97
48239003--48239335	132	2.5	132	83	3	395	29	26	16	27	1.97
48239014--48239361	44	7.9	43	77	5	270	30	27	16	26	1.96
48239841--48240036	108	1.8	108	85	2	277	46	10	15	27	1.78
48240378--48240437	6	10.2	6	76	16	54	0	13	8	78	0.96
48240385--48240435	13	3.8	13	80	12	50	0	9	9	80	0.91
48240879--48240934	24	2.5	22	85	8	76	5	5	8	80	1.02
48240879--48240934	23	2.4	23	88	5	78	5	5	8	80	1.02
48240900--48240944	15	2.9	15	83	3	63	4	4	6	84	0.87
48245190--48245445	41	6.2	41	92	1	397	30	25	21	22	1.99
48245190--48245445	81	3.1	82	90	1	397	30	25	21	22	1.99
48245483--48245619	40	3.4	40	81	9	154	21	20	21	37	1.95
48247466--48247521	11	5.2	11	82	2	69	25	28	1	44	1.64
48247497--48247594	51	1.9	51	87	4	144	25	23	4	46	1.69
48269746--48269803	21	2.8	21	86	0	80	36	13	44	5	1.66
48270150--48270306	43	3.7	42	77	6	154	21	19	30	28	1.98
48270491--48270764	43	6.4	43	77	3	248	24	16	32	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48270491--48270764	86	3.2	86	89	1	379	24	16	32	26	1.96
48270471--48270703	129	1.8	129	83	3	308	22	15	31	30	1.95
48270600--48270785	86	2.2	86	87	0	264	22	19	31	26	1.98
48270858--48270900	18	2.4	18	96	0	77	32	16	23	27	1.96
48270897--48270939	22	2.0	22	90	0	68	41	25	20	11	1.86
48271001--48271042	21	2.0	21	95	0	75	64	4	7	23	1.38
48271894--48271975	24	3.4	24	75	8	69	24	20	21	32	1.98
48282430--48282470	18	2.4	16	88	11	64	58	4	21	14	1.55
48286143--48286169	8	3.4	8	100	0	54	44	0	0	55	0.99
48286805--48286842	11	3.5	11	85	0	58	52	0	0	47	1.00
48292447--48292487	17	2.4	17	87	0	55	53	4	19	21	1.63
48294084--48294197	19	5.8	19	87	5	147	37	9	14	38	1.78
48294084--48294183	40	2.6	39	92	6	168	39	10	14	37	1.79
48294084--48294197	59	1.9	58	87	1	165	37	9	14	38	1.78
48295181--48295205	9	2.8	9	100	0	50	24	0	8	68	1.16
48306356--48306409	24	2.2	25	83	9	67	46	1	1	50	1.23
48308780--48308836	26	2.2	26	79	17	66	54	7	10	28	1.60
48309733--48309795	28	2.3	27	83	5	74	65	1	0	33	1.03
48315376--48315452	35	2.2	35	92	0	127	28	7	22	41	1.81
48323784--48323813	14	2.1	14	93	0	51	20	10	0	70	1.16
48323948--48323988	22	2.0	21	85	9	57	43	7	7	41	1.60
48324172--48324211	17	2.5	15	88	8	53	55	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48329949--48330012	30	2.1	30	85	5	85	34	7	4	53	1.51
48334908--48335032	63	2.0	63	88	0	187	25	28	14	32	1.95
48335248--48335320	30	2.4	30	84	4	85	56	2	1	39	1.22
48335425--48335538	55	2.1	55	91	3	185	35	19	10	35	1.86
48337856--48338252	195	2.0	195	98	0	758	22	13	19	44	1.85
48341115--48341166	23	2.2	24	82	6	61	48	0	3	48	1.20
48341544--48341597	15	3.7	15	87	7	76	29	11	1	57	1.44
48341544--48341597	14	3.8	14	85	4	72	29	11	1	57	1.44
48347283--48347325	11	3.9	11	81	0	50	76	6	4	11	1.13
48355318--48355343	2	13.0	2	100	0	52	50	0	0	50	1.00
48361225--48361252	6	4.7	6	100	0	56	0	14	0	85	0.59
48367570--48367621	24	2.2	24	85	0	68	51	7	3	36	1.49
48369543--48369956	110	3.7	110	92	2	688	33	21	15	29	1.94
48370064--48370099	18	2.1	17	89	5	54	72	8	5	13	1.27
48370419--48370466	22	2.2	22	88	0	69	58	2	4	35	1.29
48371592--48371625	13	2.5	14	90	4	52	26	8	26	38	1.85
48372752--48372805	24	2.2	24	90	0	81	50	9	3	37	1.52
48374702--48374737	17	2.2	17	90	5	56	30	0	0	69	0.89
48382653--48382700	25	1.9	25	95	0	87	47	0	0	52	1.00
48384387--48384446	2	30.0	2	100	0	120	50	0	50	0	1.00
48384490--48384522	2	16.5	2	93	0	57	51	0	48	0	1.00
48390325--48390505	89	2.0	89	97	0	344	41	9	19	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48396914--48396951	6	6.3	6	93	0	67	34	2	15	47	1.60
48403607--48403660	23	2.4	23	78	12	58	64	5	0	29	1.16
48408542--48408744	112	1.8	111	83	4	273	23	22	16	37	1.94
48412510--48412540	2	15.5	2	100	0	62	48	0	0	51	1.00
48426275--48426470	97	2.0	97	98	0	383	30	11	13	44	1.79
48428574--48428745	43	4.0	43	100	0	344	39	18	25	16	1.91
48433575--48433625	16	3.3	15	70	20	50	56	19	1	21	1.51
48433857--48433901	22	2.1	22	84	12	58	66	2	13	17	1.34
48433974--48434009	18	1.9	19	88	5	56	52	11	5	30	1.59
48436312--48436355	19	2.2	20	80	4	54	25	6	18	50	1.71

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163