genome.fa.s4.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  44  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14247169--14247306	41	3.5	39	75	14	115	27	19	23	29	1.98
14271487--14271537	24	2.0	26	85	14	72	52	1	13	31	1.51
14282051--14282103	21	2.5	21	81	0	61	39	35	1	22	1.65
14287237--14288084	45	19.0	45	84	3	1036	30	16	23	29	1.96
14288044--14288285	89	2.7	87	78	9	256	28	23	21	25	1.99
14288316--14288438	51	2.4	51	80	0	138	26	20	26	27	1.99
14288668--14288910	44	5.5	43	74	6	175	33	17	19	29	1.95
14289659--14289691	14	2.4	14	90	10	50	69	6	15	9	1.34
14290360--14290408	25	2.0	25	87	0	71	30	6	4	59	1.41
14290817--14290858	18	2.2	20	83	8	52	14	2	16	66	1.35
14291939--14291980	20	2.2	19	95	4	75	33	4	0	61	1.17
14291943--14292009	20	3.4	19	81	6	71	35	1	0	62	1.04
14291994--14292019	13	2.0	13	100	0	52	46	0	0	53	1.00
14292021--14292058	15	2.5	15	95	0	67	73	5	0	21	1.02
14292341--14292402	30	2.1	29	84	3	79	33	19	1	45	1.60
14295433--14295566	54	2.5	54	92	2	216	26	21	35	16	1.95
14299771--14299803	6	5.5	6	89	10	50	57	0	0	42	0.98
14309938--14310047	40	2.8	39	81	12	127	36	19	24	20	1.95
14309919--14310071	40	3.8	38	72	10	101	34	19	22	23	1.96
14310110--14310358	41	6.1	41	82	4	270	18	18	28	33	1.95
14311321--14311362	14	2.9	15	86	6	61	19	0	45	35	1.50
14311314--14311353	21	1.9	21	89	0	62	15	0	42	42	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14311324--14311393	14	4.9	14	72	11	54	20	0	44	35	1.52
14311341--14311395	21	2.6	21	77	13	67	20	0	43	36	1.52
14315598--14315836	43	5.6	43	87	0	307	21	16	31	30	1.95
14317420--14317570	74	2.0	75	91	5	245	29	7	13	49	1.70
14319828--14319872	20	2.2	20	88	0	63	28	13	13	44	1.81
14326694--14326738	20	2.2	20	88	0	63	28	13	13	44	1.81
14329428--14329488	25	2.5	25	77	17	65	50	4	6	37	1.50
14343368--14343401	15	2.3	15	94	0	59	23	0	2	73	0.97
14346156--14346211	22	2.5	21	80	8	58	28	1	3	66	1.19
14347148--14347247	27	3.6	27	72	20	75	59	4	3	34	1.32
14347218--14347257	17	2.5	15	84	11	53	62	5	0	32	1.17
14347154--14347257	8	12.1	8	68	22	52	60	3	1	33	1.26
14347438--14347566	39	3.4	39	73	11	149	58	4	3	33	1.37
14347428--14347597	75	2.3	76	94	5	310	58	4	4	33	1.36
14349514--14349538	13	1.9	13	100	0	50	36	24	8	32	1.84
14358857--14358907	23	2.3	23	82	3	68	49	0	13	37	1.43
14358920--14358985	32	2.0	33	82	2	80	59	7	1	31	1.35
14360671--14360713	8	5.1	8	78	10	50	74	0	2	23	0.93
14360645--14360730	27	3.2	26	75	11	75	67	0	3	29	1.07
14360672--14360719	17	2.8	17	87	6	62	75	0	4	20	0.97
14361167--14361332	92	1.8	90	82	8	212	34	12	20	33	1.89
14362322--14362361	18	2.2	18	91	8	64	45	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14362302--14362372	18	3.8	17	76	20	61	43	0	1	54	1.08
14362387--14362433	20	2.4	19	85	3	58	70	2	2	25	1.10
14368837--14368894	17	3.4	16	78	19	64	58	0	0	41	0.98
14368834--14368894	5	12.6	5	75	25	60	59	0	0	40	0.98
14370295--14370382	44	2.0	46	84	8	119	31	5	23	38	1.78
14370443--14370544	20	5.0	20	66	21	52	55	0	1	41	1.17
14373641--14373667	14	1.9	14	100	0	54	40	0	14	44	1.46
14374484--14374509	5	5.2	5	100	0	52	42	19	19	19	1.90
14375510--14375540	16	1.9	16	93	0	53	45	0	29	25	1.54
14376363--14376479	23	5.1	23	85	4	164	41	15	15	27	1.87
14382474--14382607	31	4.4	31	64	22	95	43	2	5	49	1.37
14382449--14382627	90	2.0	90	96	0	331	44	2	5	48	1.39
14385610--14385686	33	2.4	33	85	6	106	45	3	0	50	1.20
14385666--14385705	20	2.0	20	95	0	71	60	5	2	32	1.32
14385728--14385755	11	2.5	11	100	0	56	64	7	0	28	1.20
14385730--14385840	3	36.3	3	70	25	65	63	1	4	30	1.25
14385759--14385842	12	6.9	12	75	16	75	61	0	4	33	1.17
14385759--14385801	11	3.8	11	87	3	59	60	0	2	37	1.10
14385761--14385814	29	2.0	29	85	10	78	61	0	3	35	1.14
14385730--14385840	15	8.1	14	78	18	94	63	1	4	30	1.25
14385758--14385842	37	2.4	37	81	12	101	62	0	4	32	1.16
14385864--14385904	14	2.9	14	88	3	64	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14390255--14390306	14	3.8	13	92	7	86	19	9	0	71	1.13
14390347--14390385	15	2.6	15	95	0	69	15	2	5	76	1.06
14390348--14390398	15	3.6	14	86	5	68	13	3	7	74	1.18
14390347--14390398	14	3.6	15	84	7	72	13	3	7	75	1.17
14390348--14390405	29	2.0	29	83	6	73	20	3	10	65	1.38
14391743--14391808	20	3.4	19	72	19	57	40	1	4	53	1.31
14391743--14391818	21	3.9	21	78	18	76	39	2	3	53	1.33
14391947--14392000	23	2.3	23	81	6	65	37	20	11	31	1.88
14397355--14397395	19	2.2	19	86	8	57	36	0	2	60	1.10
14398339--14398394	16	3.5	16	92	0	94	37	5	30	26	1.79
14398376--14398468	44	2.1	44	88	9	136	33	4	25	36	1.76
14408259--14408283	2	12.5	2	100	0	50	52	0	0	48	1.00
14408593--14408634	11	3.8	11	80	0	57	2	9	19	69	1.28
14409714--14409743	7	4.4	7	91	8	53	0	30	0	70	0.88
14410273--14410301	15	1.9	15	100	0	58	62	13	0	24	1.32
14410268--14410306	15	2.5	17	80	20	57	69	10	0	20	1.17
14410789--14410825	3	12.3	3	100	0	74	32	0	0	67	0.91
14411531--14411606	3	25.3	3	76	10	75	30	3	5	60	1.37
14419034--14419069	12	3.0	12	87	0	54	38	13	16	30	1.88
14419278--14419328	5	10.0	5	75	12	50	62	1	0	35	1.06
14419278--14419328	16	3.3	16	76	15	54	62	1	0	35	1.06
14419283--14419555	124	2.2	125	96	1	507	38	13	4	44	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14424103--14424156	28	1.9	28	100	0	108	35	11	11	42	1.76
14426510--14426550	18	2.3	18	95	0	73	48	14	17	19	1.81
14433570--14433665	41	2.3	42	80	8	108	19	17	28	34	1.95
14448737--14448763	6	4.5	6	100	0	54	0	0	29	70	0.88
14450363--14450387	4	6.2	4	100	0	50	0	76	0	24	0.80
14458103--14458145	18	2.3	19	88	4	61	53	4	2	39	1.34
14458158--14458198	21	1.9	22	90	5	66	63	2	0	34	1.08
14460059--14460083	13	1.9	13	100	0	50	32	4	24	40	1.73
14466824--14466898	39	1.9	39	94	0	132	49	2	8	40	1.46
14478695--14478719	2	12.5	2	100	0	50	52	0	0	48	1.00
14478841--14478880	17	2.2	19	86	13	57	67	5	5	22	1.30
14478921--14478951	3	10.3	3	92	0	53	64	0	3	32	1.09
14478957--14478995	16	2.4	16	80	12	53	82	12	2	2	0.89
14480926--14481026	52	1.9	52	95	0	184	40	7	5	45	1.58
14495787--14495831	21	2.1	21	91	0	72	26	8	33	31	1.87
14505933--14506095	87	1.9	86	87	3	238	36	23	14	25	1.93
14513602--14513880	90	3.1	90	90	1	416	31	8	13	46	1.73
14517270--14517371	40	2.5	40	90	0	159	8	14	31	45	1.76
14521174--14521214	10	3.8	11	81	15	50	9	26	12	51	1.70
14524670--14524707	7	5.3	7	85	14	51	84	0	0	15	0.63
14525448--14525487	14	2.9	14	84	0	53	32	7	15	45	1.74
14525470--14525510	20	2.0	20	90	0	64	26	9	12	51	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14525456--14525522	35	1.9	35	87	3	100	31	8	11	47	1.71
14525450--14525526	14	5.0	15	71	20	52	32	9	14	44	1.76
14528008--14528064	14	4.3	14	72	20	50	61	3	31	3	1.30
14528018--14528067	25	2.0	25	92	0	82	60	4	32	4	1.34
14528127--14528164	18	2.1	18	95	0	67	44	0	55	0	0.99
14540737--14540830	29	3.2	29	84	0	125	19	35	28	17	1.94
14545605--14545644	21	1.9	21	89	0	62	20	0	22	57	1.41
14550241--14550385	43	3.4	43	80	5	161	29	15	24	30	1.96
14557836--14557906	34	2.1	34	84	5	90	30	8	18	42	1.80
14559010--14559048	20	2.0	20	84	0	51	35	0	2	61	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163