genome.fa.s4.2.7.7.80.10.50.1000.120.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  120  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38660501--38660550	21	2.4	21	86	0	64	40	8	12	40	1.72
38666198--38666269	38	1.9	38	85	2	101	38	1	0	59	1.06
38670832--38670860	14	2.0	15	93	6	51	48	20	0	31	1.50
38671755--38671785	16	1.9	16	100	0	62	25	19	25	29	1.99
38675066--38675103	20	2.1	18	85	14	51	28	0	13	57	1.36
38675574--38675685	46	2.4	46	96	0	206	43	16	18	21	1.87
38675704--38675874	45	3.8	45	86	3	220	36	15	21	26	1.93
38675842--38675961	46	2.6	45	85	3	152	45	19	18	16	1.85
38675662--38675895	90	2.6	90	74	5	222	41	17	17	23	1.90
38675880--38675949	22	3.1	22	63	15	52	51	15	17	15	1.77
38682006--38682185	51	3.6	50	80	8	211	28	15	26	29	1.96
38687532--38687573	21	2.0	21	85	4	57	23	26	28	21	1.99
38688418--38688453	15	2.5	15	90	4	56	19	5	2	72	1.17
38688898--38688926	11	2.6	11	100	0	58	37	0	0	62	0.96
38698706--38698764	31	1.9	31	86	6	84	23	15	13	47	1.81
38698834--38698948	60	1.9	60	82	7	144	39	20	15	25	1.91
38702833--38702892	28	2.1	29	84	3	77	51	1	0	46	1.10
38703822--38703885	32	2.0	32	100	0	128	28	9	18	43	1.81
38704634--38704659	13	2.0	13	100	0	52	53	0	0	46	1.00
38704729--38704775	23	2.1	22	84	11	60	57	6	6	29	1.49
38706216--38706263	24	2.0	24	88	8	71	27	0	10	62	1.27
38725569--38725642	26	2.8	26	81	4	87	51	9	10	28	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38728345--38728541	38	5.2	38	79	4	191	32	27	20	18	1.96
38734106--38734266	88	1.8	88	89	4	254	47	11	4	35	1.62
38736807--38736844	16	2.4	16	100	0	76	36	0	34	28	1.58
38736823--38736932	45	2.6	43	77	9	120	34	5	28	31	1.80
38760262--38760367	41	2.6	41	92	1	176	49	16	8	26	1.74
38765353--38765379	14	1.9	14	100	0	54	51	0	0	48	1.00
38766214--38766273	30	2.0	31	93	3	104	26	18	10	45	1.81
38766689--38766749	30	2.0	30	100	0	122	44	22	13	19	1.85
38767424--38767489	34	1.9	34	87	6	98	45	15	7	31	1.74
38768157--38768204	20	2.4	21	75	10	55	16	8	2	72	1.18
38768208--38768244	12	3.2	12	92	3	58	8	0	8	83	0.80
38768198--38768239	21	2.0	22	86	13	61	11	0	7	80	0.88
38768265--38768326	23	2.9	21	81	9	63	41	0	4	53	1.22
38768283--38768326	20	2.1	22	87	8	65	40	0	0	59	0.98
38768305--38768362	11	5.0	12	75	25	54	39	0	0	60	0.97
38768283--38768362	32	2.3	34	89	10	119	41	0	0	58	0.98
38768316--38768360	22	2.1	21	88	8	65	40	0	0	60	0.97
38776011--38776181	69	2.5	69	83	6	222	42	4	16	35	1.70
38776324--38776364	22	1.9	22	95	5	75	46	0	9	43	1.36
38780191--38780361	69	2.5	69	83	6	222	42	4	16	35	1.70
38780504--38780544	22	1.9	22	95	5	75	46	0	9	43	1.36
38793427--38793602	87	2.0	88	98	1	345	32	17	9	41	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38794074--38794102	13	2.1	14	93	6	51	65	0	0	34	0.93
38797610--38797669	9	6.3	9	77	19	52	65	1	1	31	1.13
38797625--38797677	11	4.8	11	77	15	56	64	1	3	30	1.22
38800128--38800175	10	4.9	10	76	2	53	25	8	0	66	1.19
38800737--38801533	398	2.0	398	99	0	1585	25	19	14	40	1.90
38815100--38815155	29	2.0	29	86	10	80	50	8	17	23	1.74
38821553--38821658	53	2.0	53	100	0	212	43	3	28	24	1.71
38822187--38822229	22	2.0	22	90	4	70	27	4	4	62	1.35
38822188--38822235	22	2.2	22	85	7	62	31	4	4	60	1.35
38823581--38823662	33	2.4	33	80	17	96	40	7	9	42	1.66
38824853--38824916	32	2.0	32	100	0	128	25	25	9	40	1.85
38828480--38828645	63	2.6	63	78	3	181	27	8	32	31	1.86
38828608--38828741	63	2.1	63	82	5	155	25	5	31	37	1.80
38828480--38828723	126	1.9	126	79	1	274	24	7	33	34	1.83
38837832--38837872	3	14.0	3	94	5	75	31	0	0	68	0.90
38839727--38839757	3	10.3	3	100	0	62	64	0	0	35	0.94
38842065--38842366	158	1.9	158	97	0	577	39	12	13	34	1.82
38851803--38851878	23	3.3	23	92	0	134	30	26	21	22	1.99
38854800--38854824	2	12.5	2	100	0	50	52	0	0	48	1.00
38865289--38865327	6	6.7	6	88	2	53	69	10	5	15	1.34
38865295--38865408	57	2.0	58	83	8	144	71	5	13	9	1.28
38866309--38866362	7	8.0	7	87	8	85	68	0	16	14	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38866309--38866362	13	4.0	14	85	9	85	68	0	16	14	1.21
38866309--38866362	20	2.7	20	97	0	99	68	0	16	14	1.21
38867627--38867774	51	2.9	50	72	5	145	33	21	21	23	1.98
38867627--38867844	99	2.2	101	86	5	309	32	21	21	24	1.98
38867678--38867829	50	3.1	49	71	11	130	34	22	17	25	1.96
38867810--38867872	29	2.2	29	94	0	108	25	23	23	26	2.00
38867866--38868052	50	3.8	50	74	4	191	33	21	19	25	1.97
38867719--38867970	128	2.0	128	91	1	407	32	22	20	24	1.98
38867843--38868035	100	1.9	99	87	5	282	33	22	19	24	1.97
38868152--38868201	25	2.0	25	84	0	64	36	20	18	26	1.95
38867927--38868414	125	3.9	125	93	0	807	34	19	19	26	1.96
38868731--38868841	41	2.5	44	82	7	129	26	19	23	30	1.98
38868629--38868938	44	7.1	44	74	9	242	30	18	23	27	1.98
38868905--38869372	175	2.7	175	76	7	466	31	20	22	26	1.98
38868632--38869113	263	1.8	261	88	4	736	30	19	22	27	1.98
38869979--38870065	39	2.2	39	89	2	129	14	10	25	49	1.75
38872488--38872529	21	2.0	22	85	4	59	33	0	14	52	1.42
38872864--38872935	27	2.8	26	83	6	76	22	27	19	30	1.98
38881847--38882067	27	8.3	27	80	2	239	17	14	21	46	1.84
38881842--38882067	80	2.8	79	82	5	276	17	15	21	46	1.84
38881847--38882067	53	4.1	54	83	1	266	17	14	21	46	1.84
38881847--38882055	107	2.0	107	84	1	276	17	15	21	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38882435--38882474	17	2.4	17	100	0	80	22	22	22	32	1.98
38883187--38883249	25	2.4	27	77	15	69	17	25	23	33	1.96
38886151--38886192	15	2.7	15	96	3	75	28	19	9	42	1.82
38887428--38887758	166	2.0	166	94	0	581	30	12	23	32	1.92
38889611--38889636	12	2.2	12	100	0	52	30	23	0	46	1.53
38893524--38893880	178	2.0	179	99	0	707	37	16	7	39	1.76
38900269--38900310	23	1.9	23	90	9	70	38	0	2	59	1.10
38900407--38900434	9	3.1	9	100	0	56	57	10	0	32	1.33
38900377--38900520	68	2.1	68	97	0	270	45	9	4	40	1.57
38900475--38900502	9	3.1	9	100	0	56	57	10	0	32	1.33
38900509--38900550	16	2.6	16	92	0	66	42	7	2	47	1.43
38900524--38900582	20	2.8	20	82	7	64	47	1	1	49	1.21
38900544--38900582	20	1.9	21	94	5	71	48	0	0	51	1.00
38903547--38903616	36	1.9	36	82	0	86	5	7	21	65	1.38
38905121--38905159	15	2.6	15	92	8	62	74	0	0	25	0.82
38905123--38905159	7	4.9	8	80	12	51	75	0	0	24	0.80
38906168--38906234	3	22.7	3	76	14	68	61	1	2	34	1.20
38907607--38907713	50	2.1	50	82	3	135	24	14	23	38	1.91
38907607--38907726	50	2.4	50	79	5	118	24	15	22	37	1.93
38907856--38908113	44	5.9	44	72	8	195	29	23	18	29	1.97
38908098--38908715	128	4.8	128	88	3	931	24	24	18	32	1.97
38908098--38908734	257	2.5	256	90	3	998	24	24	19	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38910886--38910975	46	2.0	46	82	4	110	10	12	5	72	1.27
38915360--38915432	3	23.3	3	73	15	51	57	2	4	35	1.32
38916736--38916786	20	2.5	21	84	6	61	62	3	1	31	1.24
38920210--38920254	22	2.1	22	91	4	74	57	0	2	40	1.11
38939341--38939603	130	2.0	130	93	0	454	41	7	7	42	1.63
38943318--38943389	25	2.9	25	89	0	72	29	19	29	22	1.98
38943332--38943461	25	5.2	25	80	7	115	30	18	30	21	1.97
38943416--38943472	25	2.3	25	93	0	96	28	22	29	19	1.98
38943416--38943486	25	2.8	25	85	4	81	26	23	30	18	1.97
38943578--38943640	25	2.6	25	79	2	74	33	19	28	19	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163