genome.fa.s4.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  62  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20377878--20377939	29	2.1	29	82	5	72	29	20	9	40	1.84
20383699--20383759	26	2.3	26	82	0	77	22	18	18	40	1.91
20384653--20384690	19	2.0	19	89	0	58	36	7	23	31	1.84
20387250--20387274	11	2.3	11	100	0	50	28	0	36	36	1.58
20404443--20404576	46	2.9	45	80	8	128	31	22	20	26	1.98
20408446--20408522	36	2.1	36	83	9	95	59	5	3	31	1.37
20409471--20409514	22	2.0	22	95	0	79	47	13	11	27	1.77
20410045--20410108	20	3.4	19	76	22	64	65	0	4	29	1.13
20410285--20410348	19	3.2	19	69	16	56	3	45	18	32	1.65
20420050--20420087	18	2.1	18	95	0	67	57	0	7	34	1.28
20426777--20426852	40	2.0	40	84	5	102	53	2	7	35	1.44
20432682--20432713	15	2.1	15	94	0	55	15	6	9	68	1.36
20433821--20433847	14	1.9	14	100	0	54	51	0	11	37	1.37
20434512--20434562	25	2.0	26	84	3	68	39	5	11	43	1.66
20436578--20436631	22	2.5	21	81	6	63	31	5	0	62	1.18
20439196--20439224	2	14.5	2	100	0	58	51	0	48	0	1.00
20444792--20444898	53	2.0	54	98	1	207	54	3	12	29	1.55
20444891--20444943	25	2.0	25	89	7	79	35	9	1	52	1.45
20449520--20449559	17	2.4	17	86	0	53	10	2	2	85	0.80
20449530--20449561	16	2.0	16	93	0	55	9	0	6	84	0.78
20449562--20449631	29	2.6	27	86	13	92	47	1	10	41	1.46
20449666--20449705	19	2.2	18	86	4	53	72	5	0	22	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20449666--20449716	18	2.7	19	84	3	59	68	7	0	23	1.15
20462060--20462104	18	2.3	20	85	7	58	75	4	15	4	1.12
20462060--20462109	21	2.5	20	84	9	59	74	4	18	4	1.14
20462133--20462165	13	2.5	14	85	14	52	63	0	24	12	1.28
20463693--20463764	33	2.1	34	89	2	110	40	6	13	38	1.72
20471570--20471609	20	2.0	20	90	0	62	35	5	0	60	1.19
20472506--20472554	24	2.0	24	100	0	98	55	12	8	24	1.64
20476301--20476416	41	2.8	42	85	5	155	29	26	19	24	1.99
20477284--20477327	15	3.1	14	80	12	54	43	6	0	50	1.29
20479385--20479439	22	2.5	22	96	0	101	10	16	27	45	1.80
20481751--20481789	20	2.0	20	90	10	62	35	20	33	10	1.86
20495690--20495803	44	2.6	44	83	2	131	22	28	13	35	1.92
20503833--20503884	21	2.5	21	87	0	77	30	17	26	25	1.97
20505234--20505294	20	3.1	18	82	15	68	44	21	27	6	1.77
20510911--20511011	32	3.2	32	62	29	79	32	21	14	30	1.94
20510912--20511040	64	2.0	64	98	0	249	34	24	11	30	1.91
20512158--20512187	13	2.3	13	94	0	51	10	23	0	66	1.21
20515802--20515971	48	3.5	48	86	0	214	25	20	30	24	1.99
20522619--20522737	48	2.5	48	83	2	159	27	23	26	22	2.00
20531115--20531157	18	2.4	18	84	7	61	62	9	4	23	1.44
20535056--20535110	20	2.8	20	81	10	67	47	20	20	12	1.82
20540157--20540220	32	2.0	32	100	0	128	25	12	15	46	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20541550--20541951	201	2.0	201	99	0	795	33	17	14	34	1.90
20544359--20544399	17	2.3	18	80	12	50	68	4	2	24	1.22
20548786--20548831	24	2.0	24	82	4	58	43	0	34	21	1.53
20550932--20550964	17	1.9	17	88	11	50	21	9	3	66	1.33
20552317--20552372	29	1.9	29	88	0	85	42	5	12	39	1.65
20557501--20558798	259	5.0	259	94	0	2227	31	15	18	34	1.92
20559062--20559098	5	7.6	5	87	6	58	40	0	0	59	0.97
20561831--20561973	41	3.4	42	79	7	157	35	24	16	23	1.94
20561869--20561976	43	2.6	40	81	8	126	34	25	17	22	1.96
20561915--20562041	67	1.9	68	82	8	161	32	25	15	26	1.96
20561988--20562082	41	2.3	41	83	3	120	28	25	15	30	1.96
20565080--20565147	15	4.2	16	73	12	68	73	4	19	2	1.13
20565083--20565159	16	4.8	16	76	12	52	70	3	23	2	1.17
20565838--20565895	2	29.0	2	100	0	116	0	0	50	50	1.00
20567069--20567102	11	3.0	11	91	4	50	23	0	5	70	1.09
20573195--20573254	29	2.1	29	96	0	111	41	13	16	28	1.86
20578400--20578711	43	7.0	43	83	9	351	27	29	17	25	1.97
20578572--20578678	53	2.0	54	98	1	207	29	28	17	24	1.97
20584548--20584609	26	2.4	26	81	5	72	32	6	25	35	1.82
20584569--20584606	13	2.9	13	100	0	76	23	7	28	39	1.83
20591797--20591964	46	3.6	47	79	4	189	28	16	23	30	1.96
20591781--20591957	92	1.9	92	82	2	221	27	16	23	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20602265--20602405	75	1.9	75	87	0	210	36	21	2	38	1.69
20606062--20606109	10	4.6	10	81	5	51	18	2	14	64	1.38
20615295--20615533	50	4.7	50	78	5	142	25	26	19	28	1.99
20616445--20616832	46	8.5	46	86	6	490	37	13	21	28	1.91
20616498--20617030	206	2.6	206	88	4	774	36	13	21	28	1.91
20616818--20617141	46	7.0	46	92	0	522	37	15	19	26	1.92
20616476--20617141	92	7.3	92	85	6	541	37	14	20	27	1.91
20616498--20617077	252	2.3	252	91	2	934	37	13	20	27	1.91
20616498--20617141	138	4.7	137	82	9	536	37	14	20	27	1.92
20617963--20618086	43	2.9	43	82	11	139	29	29	19	21	1.98
20624971--20625188	47	4.6	47	91	2	325	39	14	18	27	1.89
20625068--20625295	114	2.0	115	91	2	370	38	14	19	28	1.91
20625174--20625451	46	6.0	46	90	0	430	36	15	20	27	1.93
20625012--20625348	160	2.1	161	92	1	559	37	14	19	27	1.91
20626276--20626399	43	2.9	43	80	13	139	30	29	18	21	1.97
20631516--20631636	50	2.4	49	80	2	116	28	19	20	31	1.97
20631518--20631657	25	5.6	25	75	5	95	27	20	20	31	1.97
20637539--20637591	23	2.3	23	83	9	63	15	11	7	66	1.44
20638984--20639017	17	2.0	17	88	0	50	58	5	2	32	1.37
20639227--20639261	18	1.9	18	94	0	61	28	17	17	37	1.92
20642399--20642439	18	2.2	19	91	4	66	34	12	0	53	1.38
20647578--20647628	24	2.1	24	85	3	66	29	0	1	68	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20657989--20658039	24	2.1	24	85	3	66	29	0	1	68	1.00
20664096--20664343	94	2.6	94	81	0	289	32	18	26	22	1.97
20664266--20664328	27	2.4	27	86	2	83	31	20	31	15	1.94
20674115--20674153	21	1.9	21	89	5	62	61	5	2	30	1.31
20681206--20681279	39	1.9	38	86	8	105	36	29	12	21	1.90
20685608--20685707	40	2.5	40	86	0	137	42	22	25	11	1.86
20685608--20685717	20	5.5	20	84	0	112	43	20	25	10	1.83
20685590--20685725	40	3.4	39	74	10	105	41	19	26	11	1.86
20686649--20686785	69	2.0	70	92	1	231	32	6	5	54	1.50
20696135--20696315	57	3.1	58	89	4	269	27	20	6	45	1.76
20698244--20698346	40	2.6	39	83	9	127	28	22	18	31	1.97
20698255--20698434	40	4.5	40	83	2	184	28	24	16	30	1.97
20698252--20698401	80	1.9	80	85	0	210	28	24	17	29	1.97
20704150--20704299	74	2.0	74	89	0	228	30	22	14	33	1.93
20704675--20704713	19	2.2	18	86	9	53	79	7	5	7	1.05
20711964--20712030	22	3.1	21	71	12	55	2	26	2	67	1.20
20715362--20715397	18	2.0	18	88	0	54	33	5	5	55	1.46
20717937--20717975	19	2.1	19	95	0	69	61	0	0	38	0.96
20717937--20717969	10	3.4	10	91	8	59	63	0	0	36	0.95
20717937--20717975	9	4.1	9	87	9	51	61	0	0	38	0.96
20720410--20720467	30	1.9	30	89	0	89	27	31	29	12	1.92
20723050--20723081	13	2.4	14	94	5	57	46	9	0	43	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20727746--20727795	25	2.0	25	92	0	82	54	10	4	32	1.52
20736536--20736598	32	2.0	32	100	0	126	38	9	7	44	1.66
20737882--20737935	26	2.0	27	96	3	101	55	3	3	37	1.35
20742556--20742608	6	8.8	6	97	0	97	49	16	1	32	1.57
20745072--20745120	2	24.5	2	100	0	98	0	48	0	51	1.00
20748219--20748607	81	4.7	83	80	10	350	45	10	11	32	1.74
20748304--20748775	166	2.9	167	81	5	437	44	9	12	32	1.75
20748281--20748775	81	5.9	86	79	12	419	45	9	12	32	1.75
20749382--20749430	20	2.5	20	89	0	71	57	10	4	28	1.50
20754322--20754387	21	3.2	21	74	16	57	42	13	27	16	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163