genome.fa.s4.2.7.7.80.10.50.1000.154.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  154  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51217582--51217661	29	2.8	28	77	3	88	46	10	20	23	1.80
51230009--51230042	7	4.9	7	100	0	68	26	0	29	44	1.55
51243260--51243299	6	6.7	6	82	0	53	12	15	2	70	1.28
51247068--51247124	24	2.4	24	82	14	73	54	1	0	43	1.10
51264282--51264329	23	2.2	21	82	10	62	47	2	0	50	1.12
51266854--51266894	3	14.0	3	94	5	75	34	0	0	65	0.93
51270878--51270968	25	3.6	25	86	0	119	20	20	18	39	1.93
51270898--51270979	25	3.3	25	89	0	110	18	23	20	37	1.94
51271255--51271285	14	2.2	14	100	0	62	41	0	29	29	1.56
51278414--51278454	15	2.5	17	80	11	59	65	0	0	34	0.93
51280524--51280614	45	2.0	45	84	0	119	59	6	14	19	1.57
51283550--51283734	44	4.2	45	66	12	114	32	22	17	27	1.96
51283330--51283935	132	4.6	132	86	1	788	29	23	18	28	1.98
51283929--51284402	86	5.5	86	93	0	761	26	23	22	27	2.00
51291063--51291123	9	6.6	9	78	10	61	81	3	6	8	0.95
51300983--51301031	22	2.2	23	82	7	66	24	4	2	69	1.17
51301486--51301520	18	1.9	18	94	0	61	62	20	5	11	1.48
51306027--51306239	103	2.1	103	88	0	309	60	5	8	25	1.46
51306374--51306432	30	2.0	29	93	3	100	28	8	16	45	1.77
51308536--51308566	9	3.4	9	90	0	53	38	22	12	25	1.90
51310919--51310954	16	2.2	16	90	0	54	47	11	0	41	1.39
51333541--51333601	30	2.1	30	81	3	70	42	0	37	19	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51334752--51334968	41	5.4	39	82	9	134	25	20	24	29	1.99
51334729--51334862	40	3.4	38	75	16	121	37	21	20	20	1.95
51334712--51334892	79	2.2	80	82	9	208	32	18	22	25	1.97
51334832--51335133	41	7.4	41	89	2	428	18	20	27	32	1.97
51335263--51335359	21	4.6	21	68	0	68	42	17	24	15	1.88
51335263--51335368	42	2.5	42	89	0	149	41	16	24	16	1.89
51336811--51336851	18	2.3	18	86	0	55	9	24	9	56	1.62
51341443--51341472	14	2.1	14	93	0	51	30	6	13	50	1.67
51341635--51341941	43	7.2	43	87	4	390	25	21	26	26	1.99
51343549--51343605	5	10.6	5	78	14	60	36	0	1	61	1.07
51346151--51346247	21	4.6	21	68	0	68	42	17	24	15	1.88
51346151--51346256	42	2.5	42	89	0	149	41	16	24	16	1.89
51346864--51346904	18	2.3	18	86	0	55	9	24	9	56	1.62
51350365--51350411	23	2.1	22	84	4	58	48	2	6	42	1.40
51356118--51356149	15	2.3	15	89	10	50	40	0	18	40	1.51
51362412--51362618	102	2.0	103	99	0	407	40	11	9	38	1.74
51367173--51367248	29	2.6	29	85	6	91	40	2	3	52	1.34
51367461--51367515	28	2.0	28	96	3	103	54	7	0	38	1.28
51368720--51368790	27	2.6	28	93	4	119	43	0	9	46	1.37
51370530--51370570	17	2.3	18	84	12	50	43	0	12	43	1.41
51370528--51370571	18	2.3	18	84	11	52	40	0	15	43	1.47
51372232--51372276	2	22.5	2	86	0	63	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51372232--51372269	14	2.7	14	100	0	76	44	0	0	55	0.99
51372932--51372972	6	6.8	6	85	0	55	48	0	0	51	1.00
51372932--51372965	14	2.4	14	100	0	68	44	0	0	55	0.99
51393178--51393339	88	1.8	90	85	4	231	45	12	15	27	1.82
51396140--51396173	11	3.1	11	82	0	50	20	32	2	44	1.67
51396140--51396189	22	2.3	22	89	6	75	24	32	2	42	1.66
51396151--51396250	51	2.0	51	86	4	139	26	28	2	44	1.65
51398579--51398613	12	2.9	12	91	0	52	48	40	0	11	1.39
51398607--51398646	20	2.0	20	90	5	62	40	30	0	30	1.57
51398662--51398729	33	2.3	30	85	14	88	42	33	0	23	1.54
51398676--51398741	15	4.2	15	75	17	71	45	28	0	25	1.54
51398664--51398868	32	6.4	32	76	13	156	41	36	0	20	1.59
51398759--51398840	6	13.0	6	71	19	51	36	40	2	20	1.66
51398835--51398893	15	4.1	15	73	22	63	45	30	0	23	1.53
51398920--51398950	6	5.2	6	100	0	62	32	51	0	16	1.44
51398936--51399238	27	11.2	27	68	19	152	42	33	0	22	1.61
51398930--51399018	33	2.7	33	84	3	126	39	37	1	22	1.62
51399088--51399119	15	2.1	15	100	0	64	50	25	0	25	1.50
51399008--51399211	103	2.1	95	83	12	252	43	32	0	23	1.60
51399147--51399223	6	12.5	6	72	20	52	36	41	0	22	1.54
51399072--51399291	68	3.3	68	75	15	271	44	30	0	25	1.60
51399042--51399292	130	1.9	130	97	0	475	43	31	1	24	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51399191--51399249	15	4.1	15	75	20	72	45	30	0	23	1.53
51401634--51401693	22	2.6	23	78	5	68	38	0	3	58	1.15
51404564--51404613	15	3.4	14	80	8	55	28	2	2	68	1.12
51412225--51412264	2	20.0	2	100	0	80	50	0	0	50	1.00
51424055--51424133	30	2.7	29	84	7	88	27	16	22	32	1.96
51431504--51431534	7	4.4	7	91	0	53	19	0	38	41	1.51
51433693--51433950	127	2.0	126	98	0	498	29	20	19	30	1.97
51446650--51446679	15	1.9	16	93	6	53	63	0	3	33	1.11
51475583--51475628	20	2.2	21	88	3	67	52	13	26	8	1.69
51479043--51479128	31	2.9	28	80	14	86	34	5	13	45	1.68
51479378--51479416	17	2.4	16	86	4	51	53	5	2	38	1.37
51479613--51479674	30	2.0	31	81	6	72	37	3	11	48	1.55
51490781--51490821	2	20.5	2	89	0	64	46	0	48	4	1.23
51491374--51491418	18	2.5	18	85	0	63	11	11	6	71	1.31
51493980--51494139	86	1.9	85	82	8	200	37	14	8	40	1.76
51494210--51494274	18	3.4	18	75	14	60	61	1	0	36	1.05
51503021--51503052	16	2.0	16	93	0	55	53	9	0	37	1.34
51505331--51505396	20	3.1	20	80	20	64	69	4	22	3	1.20
51506241--51506316	37	2.0	38	82	7	93	27	15	22	34	1.95
51508523--51508585	31	2.0	31	87	6	90	61	0	1	36	1.05
51509492--51509526	16	2.1	17	89	5	54	40	2	25	31	1.70
51528587--51528629	21	2.0	21	82	8	52	23	20	4	51	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51530106--51530143	3	12.7	3	100	0	76	65	0	0	34	0.93
51530853--51530889	16	2.2	18	85	9	51	16	5	5	72	1.21
51530893--51530928	16	2.2	16	90	0	54	55	0	2	41	1.14
51531104--51531144	5	8.0	5	97	2	73	60	0	0	39	0.96
51533069--51533099	5	6.2	5	100	0	62	38	0	0	61	0.96
51536171--51536229	26	2.2	27	82	8	68	47	5	1	45	1.34
51536679--51536710	3	10.7	3	100	0	64	0	31	0	68	0.90
51537648--51537881	129	1.8	130	97	0	443	44	8	6	41	1.61
51545825--51545867	23	1.9	23	85	4	61	37	4	2	55	1.33
51553548--51553599	22	2.4	21	81	12	61	59	3	0	36	1.16
51553571--51553628	30	1.9	31	92	3	100	56	0	1	41	1.09
51554133--51554162	11	2.7	11	89	0	51	73	16	0	10	1.09
51555536--51555567	2	16.0	2	100	0	64	0	50	0	50	1.00
51569880--51569913	17	1.9	18	88	5	52	26	11	20	41	1.87
51574120--51574196	14	5.0	15	71	22	54	42	14	7	35	1.74
51574136--51574175	20	2.0	20	90	0	62	50	12	10	27	1.72
51575056--51575096	15	2.7	16	81	7	50	41	4	4	48	1.46
51575388--51575420	17	1.9	18	88	11	52	51	0	0	48	1.00
51575944--51575997	21	2.5	22	75	16	60	48	3	3	44	1.38
51576079--51576131	22	2.4	21	84	6	61	56	0	1	41	1.10
51591176--51591349	90	2.0	89	82	4	217	37	18	9	33	1.84
51591471--51591536	19	3.4	20	77	8	82	59	3	6	31	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51591457--51591546	38	2.3	39	77	9	103	60	2	8	28	1.39
51591496--51591589	29	3.3	28	78	14	95	56	2	8	32	1.41
51591560--51591633	20	3.7	20	73	8	62	58	5	6	29	1.47
51595061--51595097	3	12.3	3	94	0	65	64	0	2	32	1.07
51596756--51596793	9	4.1	9	84	15	51	21	2	0	76	0.91
51598336--51598363	2	14.0	2	100	0	56	50	0	0	50	1.00
51598675--51599944	635	2.0	635	97	0	2425	28	23	19	28	1.98
51601328--51601436	47	2.4	44	85	8	155	30	20	14	34	1.92
51601347--51601438	47	2.0	47	97	0	175	28	20	13	38	1.90
51601688--51601844	45	3.5	44	69	13	131	24	24	18	32	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163