genome.fa.s4.2.7.7.80.10.50.1000.55.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  55  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17772112--17772298	56	3.6	49	73	10	133	24	28	20	26	1.99
17779500--17779548	20	2.5	20	81	15	66	12	24	6	57	1.58
17781700--17781737	19	2.0	19	89	0	58	18	28	23	28	1.98
17791505--17791740	112	2.1	111	90	2	375	44	3	7	45	1.48
17793463--17793981	27	19.3	27	82	2	526	41	20	19	18	1.90
17795518--17795545	13	2.2	13	100	0	56	28	0	21	50	1.49
17800175--17800366	50	3.8	50	85	2	233	22	28	21	27	1.99
17807063--17807247	50	3.6	50	85	4	208	23	30	20	25	1.98
17830242--17830902	27	24.6	27	80	4	491	37	20	19	22	1.94
17830375--17830609	80	2.9	81	81	5	262	41	20	18	20	1.91
17830966--17831020	24	2.3	24	84	6	76	20	9	23	47	1.78
17831079--17831141	27	2.4	27	87	10	94	23	23	17	34	1.96
17831092--17831149	27	2.1	27	81	6	64	24	25	17	32	1.96
17831149--17831194	14	3.4	14	72	22	53	10	21	30	36	1.88
17831143--17831210	26	2.6	26	100	0	136	11	23	30	33	1.91
17831225--17831325	32	3.2	32	94	0	175	17	20	25	35	1.95
17831225--17831357	32	4.2	32	83	11	139	18	18	24	38	1.93
17831216--17831357	64	2.2	64	81	9	173	18	18	25	38	1.93
17836568--17836635	20	3.4	20	72	0	55	20	27	17	33	1.95
17836454--17836632	80	2.2	80	83	3	234	21	29	17	31	1.97
17836454--17836635	40	4.6	40	78	5	197	21	28	18	31	1.97
17857492--17857545	27	2.0	27	92	0	90	31	22	24	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17859733--17859788	27	2.1	27	93	0	94	35	23	21	19	1.96
17862224--17862294	27	2.7	26	72	12	63	30	25	12	30	1.93
17862327--17862382	27	2.1	27	93	0	94	33	25	23	17	1.96
17863831--17864065	50	4.7	50	95	0	425	28	24	18	28	1.98
17865862--17865895	11	2.8	12	91	8	52	35	8	11	44	1.72
17870258--17870377	40	3.0	40	82	0	150	17	30	15	36	1.90
17870279--17870341	20	3.2	19	72	17	56	12	30	17	39	1.87
17870292--17870357	20	3.3	20	70	8	62	15	36	15	33	1.88
17880608--17880808	41	4.9	41	80	0	222	24	29	14	31	1.94
17880605--17880808	82	2.5	82	83	3	250	24	29	14	31	1.95
17886738--17886774	5	7.8	5	96	3	60	0	0	13	86	0.57
17888062--17888093	3	10.7	3	100	0	64	0	34	0	65	0.93
17889537--17889570	16	2.2	15	89	5	50	50	2	0	47	1.16
17890133--17890171	19	2.1	19	100	0	78	38	15	10	35	1.81
17900363--17900392	14	2.2	14	94	5	53	40	6	0	53	1.27
17922023--17922061	18	2.2	18	86	9	53	38	5	10	46	1.60
17933904--17934096	58	3.3	59	83	2	230	36	13	25	24	1.92
17933904--17934096	29	6.6	29	79	4	201	36	13	25	24	1.92
17936901--17936992	28	2.9	32	74	22	95	26	25	23	25	2.00
17936924--17936983	28	2.2	27	91	5	102	25	26	25	23	2.00
17937288--17937347	27	2.2	27	82	5	68	25	6	25	43	1.78
17937313--17937753	54	8.2	54	80	5	435	19	16	20	43	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17937314--17937753	81	5.4	81	81	4	435	19	16	20	43	1.88
17937326--17937769	27	16.4	27	77	7	391	19	17	20	43	1.89
17938749--17940354	576	2.8	576	77	10	1621	33	27	13	26	1.93
17946000--17946111	59	1.9	59	84	0	152	21	28	12	37	1.90
17946100--17946166	29	2.3	29	89	0	98	25	26	8	38	1.85
17949672--17949734	29	2.2	29	85	0	81	19	26	12	41	1.87
17949726--17949796	29	2.4	29	81	4	72	30	22	7	39	1.81
17949743--17949878	29	4.7	29	80	4	134	26	21	13	38	1.91
17950704--17950731	5	5.6	5	100	0	56	39	0	0	60	0.97
17961041--17961066	9	2.9	9	100	0	52	23	23	30	23	1.99
17991786--17991984	43	4.7	40	76	10	191	35	25	17	22	1.95
17991745--17991984	85	2.8	85	85	1	331	34	24	17	23	1.96
18002883--18002918	15	2.4	15	90	0	54	22	16	8	52	1.70
18008187--18008237	21	2.4	22	87	9	70	23	9	23	43	1.83
18013681--18013725	20	2.2	20	96	0	81	24	22	22	31	1.99
18014832--18014877	17	2.8	17	78	12	51	28	17	8	45	1.78
18018417--18018709	145	2.0	146	99	0	579	47	13	8	31	1.72
18019436--18019511	38	2.0	38	82	5	91	46	2	31	19	1.64
18023020--18023361	45	7.8	45	72	11	208	26	24	20	28	1.99
18023112--18023487	44	8.7	43	71	13	238	28	23	19	28	1.99
18022934--18023500	217	2.6	216	81	6	575	27	23	19	29	1.98
18023497--18023704	100	2.1	100	88	0	308	24	21	19	34	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18032007--18032064	29	2.0	29	100	0	116	27	24	31	17	1.97
18032464--18032501	19	2.0	20	84	5	51	39	10	5	44	1.61
18034650--18035295	323	2.0	322	98	1	1242	31	22	20	25	1.98
18036601--18036720	52	2.3	52	80	7	127	53	6	8	31	1.57
18036799--18036833	17	2.1	17	88	0	52	65	5	2	25	1.28
18036931--18037002	34	2.1	34	100	0	144	61	11	5	22	1.50
18046474--18046525	26	2.0	26	96	0	95	30	30	17	21	1.96
18050568--18050633	29	2.3	29	81	0	87	40	21	16	21	1.91
18052237--18052322	41	2.1	41	82	0	100	34	15	25	24	1.94
18056004--18056047	23	1.9	23	86	9	63	29	2	22	45	1.65
18057538--18057924	50	7.6	50	84	2	427	23	30	20	26	1.98
18058540--18058723	50	3.6	50	88	4	251	23	32	20	23	1.98
18061825--18061889	28	2.3	28	100	0	130	32	13	30	23	1.93
18078786--18078951	85	2.0	85	90	2	262	24	32	16	25	1.96
18078786--18078977	43	4.5	43	88	2	262	24	31	17	27	1.97
18082493--18082636	67	2.1	67	94	0	252	38	8	12	40	1.73
18082560--18082825	148	1.8	147	94	0	469	32	13	12	41	1.81
18083647--18083815	89	1.9	90	90	1	268	46	26	2	24	1.67
18083831--18083872	21	2.0	21	90	0	66	28	47	0	23	1.52
18083839--18083885	21	2.2	21	84	0	58	34	40	0	25	1.56
18084291--18084568	41	6.8	41	83	0	286	29	26	21	21	1.99
18084295--18084568	123	2.2	123	83	3	327	30	26	21	21	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18085412--18085603	50	3.7	50	78	8	163	20	27	23	28	1.99
18091387--18091442	21	2.7	21	78	15	62	35	28	16	19	1.93
18116534--18116590	30	1.9	30	89	7	89	38	7	22	31	1.81
18116844--18116989	51	2.8	52	76	7	163	25	17	25	31	1.97
18116995--18117093	46	2.2	43	82	12	119	23	19	25	32	1.97
18117217--18117248	16	2.0	16	93	0	55	59	0	12	28	1.34
18120336--18120380	22	2.0	22	83	8	56	40	4	0	55	1.20
18121021--18121066	21	2.3	20	78	14	51	30	6	17	45	1.73
18135131--18135163	17	1.9	17	100	0	66	63	12	12	12	1.52
18138041--18138072	15	2.1	15	100	0	64	18	6	12	62	1.50
18140469--18140639	27	6.3	27	81	5	202	43	16	19	19	1.88
18140477--18140636	81	2.0	81	87	0	230	43	16	20	20	1.88
18140787--18140860	26	2.8	27	81	4	80	18	16	22	41	1.89
18140815--18140910	26	3.7	26	84	1	113	14	15	23	45	1.83
18141867--18141900	18	1.9	18	88	5	52	50	5	23	20	1.70
18147991--18148252	27	9.7	27	80	6	271	40	20	19	19	1.91
18148418--18148486	26	2.7	25	78	8	68	20	24	17	37	1.93
18151626--18151722	40	2.5	40	83	5	117	27	17	32	21	1.96
18151634--18151722	20	4.4	20	80	5	99	26	16	33	22	1.96
18169227--18169311	41	2.1	40	86	6	118	22	18	5	52	1.66
18170851--18170890	21	1.9	21	100	0	80	27	10	22	40	1.86
18172937--18172976	21	1.9	21	100	0	80	27	10	22	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18177602--18177712	48	2.3	48	85	3	143	15	16	26	42	1.87
18181982--18182014	13	2.4	14	90	5	50	42	6	3	48	1.43
18187609--18187657	22	2.2	22	89	7	73	81	6	6	6	0.98
18187647--18187727	6	12.7	6	73	21	58	75	4	13	6	1.16
18187646--18187727	13	6.3	13	72	20	64	75	4	13	6	1.15
18188588--18188615	13	2.2	13	100	0	56	71	0	14	14	1.15
18189820--18190571	88	8.6	87	84	3	866	27	24	24	22	2.00
18189820--18190571	263	2.9	262	83	3	954	27	24	24	22	2.00
18189820--18190569	351	2.1	351	85	3	1001	27	24	24	22	2.00
18190315--18190539	44	5.1	43	64	14	118	25	27	25	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163