genome.fa.s4.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  50  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16039868--16039904	8	4.6	8	87	12	58	72	0	0	27	0.84
16040396--16040643	99	2.5	97	83	11	311	30	0	15	53	1.45
16040385--16040682	105	2.9	100	84	9	376	29	0	15	54	1.46
16040660--16040696	16	2.3	16	86	13	58	29	2	5	62	1.31
16043467--16043502	16	2.2	16	95	5	63	27	0	5	66	1.13
16043526--16043585	27	2.2	27	93	0	102	25	25	33	16	1.96
16048330--16048366	17	2.2	17	100	0	74	24	10	5	59	1.52
16049653--16049691	19	2.1	19	90	4	62	25	7	7	58	1.52
16049664--16049701	19	2.0	19	85	10	51	26	7	10	55	1.61
16049806--16049844	15	2.6	15	88	8	53	41	2	23	33	1.68
16052875--16052918	23	1.9	22	82	17	54	36	25	0	38	1.56
16057660--16057706	21	2.2	21	92	0	76	46	12	0	40	1.42
16062286--16062318	16	2.0	17	88	5	50	33	27	6	33	1.81
16068188--16068238	19	2.7	18	79	8	57	7	29	1	60	1.36
16081843--16081933	37	2.5	37	87	1	139	40	32	13	13	1.83
16085457--16085641	73	2.5	74	85	3	259	17	11	28	42	1.84
16085457--16085641	37	5.1	37	85	2	257	17	11	28	42	1.84
16096940--16096965	12	2.2	12	100	0	52	15	0	26	57	1.38
16096918--16096987	34	2.0	35	91	2	115	14	1	31	52	1.50
16096894--16097010	57	2.0	58	88	4	175	12	2	35	49	1.55
16096952--16097044	23	4.1	23	86	4	127	10	2	40	46	1.51
16097725--16097768	23	2.0	23	86	13	65	40	2	20	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16106136--16106175	16	2.5	17	80	12	57	40	5	5	50	1.46
16106769--16106846	31	2.6	29	78	9	68	52	3	5	38	1.42
16107903--16107946	23	2.0	23	86	13	65	40	2	20	36	1.65
16116314--16116353	16	2.5	17	80	12	57	40	5	5	50	1.46
16116947--16117024	31	2.6	29	78	9	68	52	3	5	38	1.42
16119161--16119714	275	2.0	276	99	0	1101	37	15	8	39	1.77
16120017--16120059	1	43.0	1	83	0	50	2	6	0	90	0.52
16120553--16120613	28	2.2	28	88	5	88	34	9	22	32	1.87
16120548--16120725	97	1.8	96	90	2	284	25	10	17	46	1.79
16128172--16128222	20	2.5	20	96	0	93	45	1	15	37	1.58
16128373--16128417	21	2.2	20	84	4	54	42	0	13	44	1.43
16128856--16128913	26	2.3	25	84	3	71	17	25	20	36	1.94
16133262--16133301	20	2.0	20	100	0	80	20	15	25	40	1.90
16141850--16141915	30	2.2	29	79	12	71	33	15	6	45	1.70
16149833--16149973	75	1.9	76	90	1	230	27	9	11	51	1.68
16149733--16150118	212	1.8	214	86	3	573	25	11	12	50	1.74
16150861--16150920	13	4.2	14	70	19	52	33	35	5	26	1.78
16150912--16150951	20	2.0	20	90	0	62	37	42	0	20	1.52
16151237--16151285	14	3.4	14	83	5	62	38	36	0	24	1.56
16151237--16151285	15	3.4	15	83	5	57	38	36	0	24	1.56
16151398--16151452	25	2.2	25	78	12	69	21	7	7	63	1.44
16151404--16151451	25	1.9	25	87	8	71	22	8	8	60	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16151543--16151964	114	3.7	114	92	2	681	25	26	22	25	2.00
16152960--16153169	114	1.9	112	85	9	293	26	26	21	25	2.00
16153069--16153242	73	2.4	73	91	3	280	24	24	22	27	2.00
16152960--16153355	187	2.1	185	84	6	516	27	24	21	27	1.99
16153142--16153677	114	4.7	114	84	2	659	25	24	21	27	1.99
16154151--16154205	20	2.7	20	88	5	74	67	16	9	7	1.40
16155096--16155155	21	2.9	21	75	7	68	26	38	10	25	1.87
16166152--16166199	18	2.7	18	96	0	87	35	12	12	39	1.81
16166623--16166794	72	2.4	72	83	4	233	26	7	13	52	1.66
16169574--16169619	24	1.9	24	82	8	58	30	15	2	52	1.55
16198176--16198225	26	1.9	26	95	0	91	50	8	14	28	1.70
16210106--16210175	26	2.6	27	86	4	97	40	8	0	51	1.33
16215457--16215501	18	2.5	18	81	0	63	28	8	48	13	1.72
16218788--16220513	864	2.0	861	96	1	3172	28	24	22	24	1.99
16222275--16222437	26	6.4	26	71	18	96	0	30	0	68	0.94
16222287--16222438	21	7.3	21	68	20	81	0	32	0	67	0.96
16222266--16222425	38	4.6	36	75	15	124	0	31	0	67	0.95
16222245--16222421	64	2.8	61	81	13	200	0	31	0	68	0.94
16222342--16222435	38	2.4	38	75	19	95	0	32	0	67	0.91
16222585--16222637	27	2.0	27	92	7	90	37	0	3	58	1.16
16230223--16230251	5	5.8	5	100	0	58	20	0	20	58	1.39
16231736--16231780	20	2.2	20	84	4	54	44	22	17	15	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16235635--16235675	20	2.0	20	100	0	82	34	14	19	31	1.92
16238423--16238471	5	9.8	5	100	0	98	20	0	20	59	1.38
16243355--16243400	24	2.0	23	91	4	74	39	2	0	58	1.10
16243355--16243400	23	2.0	24	91	4	76	39	2	0	58	1.10
16245694--16245729	17	2.2	17	95	5	65	36	0	5	58	1.22
16245693--16245741	18	2.8	18	77	20	59	36	0	4	59	1.17
16253386--16253419	1	34.0	1	93	0	59	0	2	97	0	0.19
16253387--16253419	17	1.9	17	100	0	66	0	3	96	0	0.20
16255382--16255455	36	2.1	36	92	7	127	14	0	16	68	1.20
16263980--16264004	12	2.1	12	100	0	50	24	36	24	16	1.94
16264164--16264240	9	8.4	9	84	8	93	40	27	9	23	1.84
16264381--16264410	13	2.3	13	100	0	60	16	0	43	40	1.48
16267138--16267219	43	1.9	43	82	7	105	26	20	24	28	1.99
16270728--16270767	21	2.0	21	85	9	57	2	22	0	75	0.93
16271094--16271145	26	2.0	27	85	11	72	30	15	5	48	1.68
16271159--16271184	13	2.0	13	100	0	52	53	7	0	38	1.30
16272620--16272644	12	2.1	12	100	0	50	68	8	0	24	1.16
16273372--16274415	519	2.0	520	95	1	1889	19	16	25	38	1.92
16274608--16274999	50	7.7	50	78	7	369	26	21	22	29	1.99
16274610--16275012	100	4.0	100	85	6	472	26	21	21	30	1.98
16276001--16276232	41	5.7	41	90	2	367	21	21	25	30	1.98
16276325--16276786	146	3.2	146	99	0	915	29	1	28	40	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16276807--16276891	7	12.1	7	78	5	73	20	0	49	30	1.49
16277003--16277087	7	12.1	7	78	5	73	20	0	49	30	1.49
16276674--16277224	196	2.8	196	97	0	1030	28	1	32	37	1.67
16278511--16278592	38	2.2	38	88	0	119	20	14	8	56	1.65
16283896--16284058	43	3.8	43	90	0	245	25	21	26	26	1.99
16290280--16290354	37	2.0	37	100	0	150	24	21	18	36	1.95
16292075--16292129	29	2.0	27	82	13	67	60	10	14	14	1.60
16299457--16299520	25	2.6	25	89	0	101	35	18	28	17	1.93
16299516--16299586	27	2.7	25	81	10	79	35	18	29	16	1.93
16299693--16299755	25	2.6	25	76	2	65	34	19	26	19	1.95
16319864--16319914	22	2.3	23	80	10	61	56	5	3	33	1.42
16320477--16320576	53	1.9	51	85	4	137	23	34	3	40	1.70
16321866--16321954	41	2.1	42	95	4	171	25	16	20	37	1.93
16334277--16334374	48	2.0	48	84	3	126	28	15	21	34	1.94
16335266--16335308	22	2.0	22	90	0	68	18	72	0	9	1.11
16344898--16345015	48	2.5	48	90	0	182	38	25	16	18	1.92
16350109--16350422	68	4.6	68	81	2	317	33	13	24	28	1.93
16366811--16366847	16	2.2	17	90	4	58	70	0	0	29	0.88
16368458--16368494	7	5.1	7	93	6	65	13	43	0	43	1.44
16368458--16368494	15	2.6	14	95	4	65	13	43	0	43	1.44
16369159--16369199	3	13.7	3	86	0	55	63	2	31	2	1.20
16385048--16385115	31	2.2	31	94	2	120	39	14	17	27	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16386355--16386393	20	1.9	21	89	5	62	41	0	25	33	1.56
16394498--16394623	63	2.0	63	100	0	252	30	17	12	39	1.87
16394775--16394805	2	15.5	2	100	0	62	51	0	0	48	1.00
16404838--16404879	17	2.5	17	84	3	50	33	4	0	61	1.17
16404931--16405409	234	2.0	236	98	0	926	39	9	5	45	1.61
16408715--16408897	46	4.2	46	73	14	154	46	24	13	15	1.81
16408715--16408772	23	2.5	23	91	0	89	50	25	10	13	1.74
16408715--16408830	58	2.0	58	84	0	151	49	24	12	14	1.77
16408738--16408807	35	2.0	35	85	0	95	48	22	12	15	1.79
16408773--16408897	23	5.4	23	86	0	169	45	23	14	16	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163