genome.fa.s4.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  40  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13068385--13068481	25	3.9	23	77	20	90	19	23	22	34	1.97
13071531--13071582	20	2.8	19	78	18	56	42	3	1	51	1.31
13072581--13072606	7	3.7	7	100	0	52	73	0	11	15	1.11
13072787--13072840	23	2.4	22	78	9	54	51	1	0	46	1.11
13080362--13080416	27	2.0	28	83	13	71	38	7	3	50	1.48
13083921--13083954	17	2.0	17	100	0	68	52	11	11	23	1.70
13085816--13085867	27	2.0	26	84	3	68	13	28	5	51	1.64
13086002--13086131	43	3.0	43	100	0	260	14	34	6	43	1.72
13089105--13089176	22	3.5	22	71	21	82	29	1	9	59	1.38
13089094--13089174	40	2.0	40	100	0	162	29	2	9	58	1.44
13089113--13089176	20	3.2	20	68	24	62	28	1	9	60	1.36
13092154--13092355	58	3.5	57	81	7	200	37	13	20	28	1.91
13092377--13092639	69	3.7	69	76	10	208	21	19	22	36	1.95
13094781--13094806	13	2.0	13	100	0	52	38	7	7	46	1.61
13095499--13095541	22	2.0	22	90	0	68	11	34	25	27	1.91
13099251--13099289	14	2.8	13	78	14	51	0	20	0	79	0.73
13103632--13103665	16	2.1	16	94	0	59	41	2	11	44	1.56
13110218--13110335	28	4.2	28	77	4	130	33	22	20	23	1.97
13110218--13110335	56	2.1	56	84	3	148	33	22	20	23	1.97
13110445--13110517	26	2.8	26	89	0	110	35	26	20	17	1.95
13110741--13110792	27	1.9	27	84	7	70	30	19	11	38	1.87
13110751--13111078	27	12.2	26	81	8	322	21	16	20	42	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13110724--13111078	81	4.4	80	81	5	369	21	16	20	41	1.90
13113984--13114011	5	5.6	5	100	0	56	78	0	0	21	0.75
13114253--13114296	20	2.2	20	84	4	63	56	0	2	40	1.11
13114241--13114272	8	4.1	8	96	4	57	65	0	0	34	0.93
13116648--13116703	24	2.4	24	87	3	87	48	12	7	32	1.68
13119197--13119247	25	2.0	26	96	3	95	37	3	23	35	1.74
13128821--13128930	49	2.4	47	80	7	118	28	17	8	46	1.76
13131277--13131460	45	4.2	43	78	10	196	26	18	26	28	1.98
13147550--13147585	7	5.1	7	93	0	63	27	2	0	69	1.02
13148153--13148626	231	2.1	231	86	2	648	35	5	32	26	1.80
13148239--13148706	231	2.0	231	79	5	500	37	5	31	25	1.80
13152740--13152994	127	2.0	128	99	0	503	37	8	8	45	1.66
13163591--13163636	24	2.0	23	86	4	65	52	2	2	43	1.25
13163518--13163664	31	4.7	32	82	5	158	55	0	3	40	1.22
13168698--13168733	17	2.1	18	89	5	56	33	2	0	63	1.08
13172370--13172424	21	2.6	21	91	0	83	29	38	9	23	1.85
13177582--13177730	29	5.1	29	91	3	255	38	8	0	52	1.33
13177802--13177866	6	10.5	6	79	11	69	18	46	1	33	1.59
13177802--13177902	13	7.8	13	71	14	68	15	49	2	31	1.60
13177827--13177866	19	2.1	19	100	0	80	15	50	0	35	1.44
13177851--13177951	28	3.5	28	72	15	105	10	51	4	32	1.58
13177827--13177987	60	2.6	60	74	12	175	14	50	3	31	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13177964--13178004	6	6.5	6	91	8	64	14	53	0	31	1.41
13177964--13178004	13	3.2	13	93	3	66	14	53	0	31	1.41
13177964--13178004	19	2.2	19	91	8	66	14	53	0	31	1.41
13177746--13177999	137	1.9	136	93	4	440	14	49	3	32	1.61
13177879--13178096	102	2.1	103	95	1	395	14	49	3	32	1.61
13178041--13178096	6	9.2	6	78	9	60	19	44	1	33	1.61
13178041--13178096	13	4.1	13	77	18	60	19	44	1	33	1.61
13178636--13178678	13	3.3	13	82	17	54	46	2	2	48	1.27
13182864--13182920	30	1.9	29	86	10	80	61	8	5	24	1.46
13189820--13189910	41	2.2	41	84	3	112	28	21	20	28	1.99
13193953--13193989	19	2.1	19	90	10	60	43	8	0	48	1.32
13194201--13194225	8	3.1	8	100	0	50	24	36	12	28	1.91
13194479--13194541	27	2.3	27	83	5	72	33	25	1	39	1.65
13196848--13196894	16	3.1	16	87	6	71	42	2	0	55	1.12
13204881--13204920	19	2.0	21	90	9	66	55	0	0	45	0.99
13204881--13204922	18	2.3	19	84	12	52	57	0	0	42	0.99
13204901--13204953	28	1.9	27	85	11	72	60	3	0	35	1.15
13206595--13206656	22	2.8	22	85	0	79	70	9	12	6	1.31
13209774--13209823	20	2.4	22	80	6	59	28	2	16	54	1.53
13211357--13211386	2	15.0	2	100	0	60	50	0	0	50	1.00
13215263--13215330	34	2.0	35	85	2	93	35	7	13	44	1.71
13222687--13222726	16	2.5	16	84	12	55	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13222684--13222734	15	3.3	16	81	8	61	35	0	0	64	0.94
13225299--13225345	21	2.2	22	88	3	69	21	36	19	23	1.95
13231229--13231401	82	2.1	84	94	4	314	42	10	7	39	1.67
13242801--13242953	61	2.5	60	82	9	177	43	11	4	41	1.61
13242801--13242953	60	2.5	62	81	7	179	43	11	4	41	1.61
13244103--13244247	69	2.1	69	89	2	220	40	6	13	40	1.70
13246256--13246330	26	2.9	26	97	0	141	53	22	5	18	1.65
13246367--13246400	17	2.0	17	100	0	68	41	17	11	29	1.85
13246761--13246989	30	7.7	30	76	11	197	57	12	2	27	1.46
13246902--13246979	9	8.8	9	71	18	56	55	14	3	26	1.56
13246890--13246971	25	3.2	25	78	10	92	57	12	3	26	1.51
13249287--13249480	27	7.3	27	83	5	234	43	22	17	17	1.88
13249286--13249480	77	2.5	80	86	4	252	43	22	16	16	1.87
13253492--13253703	30	7.3	30	79	8	219	56	13	4	25	1.55
13253574--13253709	15	9.3	15	66	21	67	56	14	4	24	1.57
13253599--13253637	21	1.9	21	89	5	62	58	12	5	23	1.54
13253590--13253701	25	4.2	25	82	12	116	58	14	3	24	1.52
13253620--13253701	25	3.2	25	85	10	119	56	14	3	25	1.55
13253492--13253709	9	22.7	9	67	19	84	56	13	4	25	1.56
13256801--13256922	60	2.0	60	100	0	244	29	11	8	50	1.67
13257432--13257456	13	1.9	13	100	0	50	40	28	8	24	1.83
13264003--13264225	90	2.6	86	84	5	281	32	11	17	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13264344--13264416	34	2.1	35	90	5	114	28	12	9	49	1.72
13266619--13266683	4	16.2	4	100	0	130	50	24	0	24	1.49
13269309--13269519	117	1.8	117	90	0	341	22	9	23	44	1.83
13272645--13272684	20	2.0	21	85	5	55	50	15	20	15	1.79
13273077--13273112	16	2.4	14	83	16	54	27	22	11	38	1.88
13273082--13273112	16	1.9	16	100	0	62	29	25	12	32	1.93
13273448--13273484	18	2.1	18	94	0	65	51	13	5	29	1.63
13273731--13273769	21	1.9	21	94	5	71	25	35	0	38	1.56
13273778--13273803	7	3.7	7	100	0	52	15	69	0	15	1.20
13274327--13274357	5	6.2	5	92	0	53	19	19	22	38	1.93
13277627--13277654	12	2.3	12	100	0	56	7	0	7	85	0.73
13279803--13279845	22	2.0	22	90	0	68	9	18	27	44	1.80
13279893--13279933	21	2.0	21	95	0	73	9	21	26	41	1.84
13279808--13279994	86	2.2	86	98	0	356	19	25	27	27	1.99
13280066--13280211	43	3.4	42	83	7	168	19	19	26	34	1.96
13280066--13280231	43	3.8	43	82	2	109	22	21	24	31	1.98
13307984--13308335	175	2.0	176	99	0	697	34	13	19	31	1.91
13308960--13309012	16	3.3	16	97	0	97	37	5	32	24	1.79
13308994--13309099	39	2.5	44	83	11	132	30	3	30	35	1.75
13308994--13309086	44	2.1	46	89	4	145	29	4	29	37	1.76
13311865--13311957	46	2.0	46	95	0	168	40	20	12	25	1.88
13313348--13313403	3	18.7	3	100	0	112	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13313492--13313540	23	2.1	22	82	14	55	55	18	4	22	1.60
13317409--13317480	36	2.0	36	81	5	83	31	2	1	63	1.17
13318859--13318949	43	2.1	42	86	4	128	45	9	8	36	1.69
13324386--13324419	7	4.9	7	100	0	68	14	58	11	14	1.63
13324562--13324599	20	1.9	20	84	10	51	39	31	2	26	1.70
13325386--13325420	18	1.9	18	100	0	70	22	22	17	37	1.94
13326222--13326383	7	23.0	7	72	8	60	19	0	35	44	1.56
13326222--13326381	14	11.4	14	71	14	87	20	0	35	44	1.56
13326284--13326331	15	3.3	15	85	5	71	16	0	35	47	1.47
13326287--13326383	21	4.6	20	75	6	68	16	0	39	44	1.48

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163