genome.fa.s4.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  22  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6871992--6872138	7	20.6	7	66	6	53	23	2	27	46	1.65
6871992--6872036	14	3.2	14	83	0	63	20	0	31	48	1.49
6872055--6872150	36	2.7	35	77	6	93	25	3	26	45	1.68
6872070--6872137	14	4.7	14	76	5	64	22	4	27	45	1.71
6872070--6872178	28	3.8	28	77	8	94	22	2	32	43	1.67
6872320--6872356	15	2.5	15	80	20	51	27	0	27	45	1.54
6872315--6872365	22	2.4	21	71	15	50	27	0	25	47	1.53
6872579--6872614	7	5.1	7	100	0	72	13	44	0	41	1.44
6874550--6874583	16	2.1	16	94	0	59	50	5	2	41	1.42
6879397--6879421	12	2.1	12	100	0	50	8	0	60	32	1.26
6879771--6879868	43	2.3	43	81	0	106	21	17	32	28	1.96
6881202--6881244	18	2.3	19	80	15	54	67	2	0	30	1.03
6891776--6891818	21	2.0	21	95	0	77	9	20	25	44	1.81
6894816--6894865	21	2.4	21	86	6	66	40	0	18	42	1.50
6895429--6895489	25	2.5	24	78	5	68	16	26	22	34	1.95
6903015--6903080	16	3.7	18	70	12	55	33	0	9	57	1.30
6903015--6903087	18	4.1	17	71	15	58	36	0	8	54	1.30
6903057--6903099	19	2.3	18	80	4	50	32	0	6	60	1.23
6906506--6906556	25	2.0	25	96	0	93	70	7	9	11	1.33
6910311--6910397	42	2.1	42	86	0	120	49	17	4	28	1.66
6910419--6910458	19	2.2	18	95	4	71	42	15	2	40	1.60
6931118--6931245	23	6.1	23	74	18	120	39	3	0	57	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6931119--6931213	41	2.3	41	88	1	145	38	3	0	57	1.14
6931130--6931239	11	10.1	11	76	17	97	37	3	0	59	1.15
6939052--6939104	26	2.0	26	92	0	88	41	0	0	58	0.98
6943063--6943094	2	16.0	2	100	0	64	50	0	0	50	1.00
6943157--6943190	2	17.0	2	100	0	68	50	0	0	50	1.00
6946976--6947034	18	3.1	18	73	17	57	54	1	0	44	1.10
6956075--6956120	16	2.9	16	90	0	74	26	32	0	41	1.56
6956077--6956130	16	3.4	16	86	0	72	31	31	0	37	1.58
6956865--6956930	27	2.4	28	97	2	125	40	9	0	50	1.34
6956956--6957018	27	2.3	27	91	0	108	17	30	28	23	1.97
6957547--6957588	21	2.0	21	85	0	57	52	9	19	19	1.72
6958286--6958344	27	2.2	27	90	0	91	28	30	25	15	1.96
6959819--6959853	18	1.9	18	88	11	54	17	14	37	31	1.89
6960621--6960651	15	2.1	15	93	0	53	45	6	16	32	1.72
6975589--6975643	22	2.4	22	80	14	58	30	1	10	56	1.44
6978515--6978596	41	2.0	41	86	9	114	25	18	10	45	1.82
6997152--6997220	21	3.3	21	83	0	84	40	20	36	2	1.67
6997206--6997244	12	3.2	12	92	0	69	41	15	41	2	1.61
6997785--6997928	42	3.4	42	91	2	207	25	20	23	29	1.99
7003906--7003949	22	2.0	22	95	0	79	54	6	9	29	1.58
7006289--7006335	18	2.7	18	80	9	53	23	0	4	72	1.02
7006686--7006733	16	2.9	16	75	6	51	81	6	4	8	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7053977--7054145	87	2.0	86	89	3	259	27	13	17	42	1.86
7064759--7064829	31	2.3	31	85	0	97	26	14	19	39	1.90
7064512--7064868	184	1.9	185	86	2	504	29	9	19	41	1.83
7066401--7066433	7	4.6	7	96	3	57	42	0	0	57	0.98
7066926--7066967	15	2.9	15	86	6	52	73	2	11	11	1.18
7068681--7068720	20	2.0	21	95	5	73	40	0	7	52	1.30
7069317--7069356	20	2.0	21	95	5	73	40	0	7	52	1.30
7068348--7069614	636	2.0	636	98	0	2462	33	13	19	34	1.90
7076210--7076313	52	2.0	52	92	0	172	33	12	25	27	1.92
7076475--7076531	16	3.6	16	92	0	96	45	5	3	45	1.43
7076505--7076566	22	2.7	23	90	5	90	48	1	1	48	1.21
7077966--7078054	43	2.1	43	82	4	108	58	3	5	32	1.38
7077911--7078129	108	2.0	107	88	4	325	60	4	6	28	1.41
7078035--7078136	33	3.2	30	66	12	78	61	2	5	29	1.34
7078009--7078212	65	3.1	65	84	8	266	64	2	4	28	1.27
7078073--7078182	35	3.1	35	68	19	102	60	3	3	32	1.32
7078059--7078231	70	2.4	74	84	6	255	65	2	4	27	1.26
7078178--7078232	19	2.7	20	86	8	67	76	1	5	16	1.06
7079609--7079797	51	3.9	49	73	13	131	28	19	15	36	1.92
7079668--7079917	45	5.5	45	74	7	198	30	21	14	34	1.93
7079617--7079932	95	3.4	95	81	6	358	30	19	14	35	1.92
7079660--7079962	89	3.3	88	85	4	354	29	20	14	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7079753--7079961	45	4.7	45	75	10	169	29	20	14	34	1.93
7080537--7080595	24	2.4	24	83	11	75	18	5	8	67	1.35
7080552--7080605	24	2.2	24	83	0	63	20	5	7	66	1.37
7080559--7080612	20	2.9	19	76	13	60	18	5	9	66	1.39
7080687--7080724	15	2.5	16	83	12	53	15	10	2	71	1.25
7080775--7080815	15	2.7	15	84	0	55	26	7	4	60	1.43
7087973--7088004	2	16.0	2	93	0	55	46	0	3	50	1.17
7088203--7088592	114	3.4	113	87	5	572	26	24	25	23	2.00
7104897--7104938	16	2.7	15	82	13	50	26	19	21	33	1.97
7106022--7106067	16	2.9	16	80	0	56	36	6	0	56	1.25
7108885--7108955	34	2.1	34	100	0	142	42	33	2	21	1.67
7115548--7115619	31	2.3	31	85	0	99	48	12	6	31	1.67
7118820--7118860	14	2.9	14	80	20	50	82	2	0	14	0.76
7122024--7122066	23	2.0	23	81	9	54	65	2	0	32	1.06
7122308--7122360	21	2.5	21	90	0	79	30	37	9	22	1.86
7125488--7125536	18	2.7	18	80	20	66	73	0	24	2	0.94
7125493--7125529	20	1.9	19	89	10	58	72	0	24	2	0.97
7125542--7125579	20	1.9	20	84	10	51	31	5	5	57	1.43
7127057--7127086	16	1.9	15	93	6	51	63	3	0	33	1.11
7128483--7128647	43	4.0	42	72	10	151	31	22	20	26	1.98
7128463--7128654	84	2.3	83	88	0	276	30	22	20	25	1.98
7128546--7128835	129	2.3	128	88	1	429	28	21	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7134756--7134883	16	8.3	16	66	25	55	34	23	2	39	1.68
7153572--7153602	16	1.9	16	93	0	53	22	0	12	64	1.27
7155467--7155516	21	2.4	21	76	10	57	30	34	10	26	1.89
7157226--7157250	7	3.6	7	100	0	50	0	40	16	44	1.47
7159040--7159093	16	3.4	16	68	27	51	20	33	22	24	1.97
7160500--7160554	17	3.4	17	83	14	64	45	0	0	54	0.99
7160999--7161051	21	2.5	21	90	0	79	30	35	9	24	1.87
7163040--7163159	58	2.1	58	88	3	179	40	7	15	35	1.76
7166146--7166186	17	2.4	17	84	12	57	46	2	0	51	1.14
7166149--7166195	19	2.6	18	79	3	58	46	2	0	51	1.13
7178403--7178452	22	2.3	21	82	3	64	64	0	4	32	1.12
7180553--7180596	16	2.8	16	82	3	54	65	0	0	34	0.93
7180553--7180629	15	5.1	15	77	13	77	61	2	0	36	1.10
7180574--7180652	15	5.2	15	74	21	58	64	3	0	31	1.11
7180556--7180667	45	2.5	44	80	12	129	63	2	1	32	1.19
7180793--7180852	17	3.8	17	73	24	60	0	18	0	81	0.69
7180792--7180845	17	3.3	16	82	10	65	0	20	0	79	0.73
7180797--7180854	12	5.1	11	84	14	73	0	18	0	81	0.70
7181124--7181156	9	3.8	9	88	8	50	9	3	0	87	0.63
7181124--7181156	17	1.9	17	93	0	57	9	3	0	87	0.63
7181257--7181305	18	2.7	18	80	0	53	0	40	0	59	0.98
7181257--7181307	10	5.3	10	77	15	54	0	39	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7181534--7181690	59	2.6	59	83	10	187	41	1	21	35	1.62
7181534--7181674	30	4.8	28	74	14	124	40	0	23	35	1.60
7181537--7181690	30	5.2	29	70	17	102	42	1	21	35	1.61
7181862--7182334	77	6.1	76	84	7	528	34	19	17	27	1.95
7181862--7182336	156	3.1	154	83	8	531	34	19	17	27	1.95
7185112--7185179	34	2.0	34	97	0	127	22	23	25	29	1.99
7188156--7188310	39	3.8	39	85	5	168	38	18	21	21	1.94
7188149--7188293	45	3.3	44	80	12	174	40	17	20	22	1.92
7192053--7192085	9	3.7	9	84	15	50	9	12	6	72	1.26
7192042--7192099	18	3.2	18	90	4	82	12	12	6	68	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163