genome.fa.s4.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  11  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3624552--3624589	3	12.7	3	88	0	58	5	0	60	34	1.19
3624552--3624595	12	3.7	12	90	0	70	9	0	56	34	1.31
3625723--3626040	169	1.9	169	86	3	453	44	18	11	26	1.84
3626650--3626697	23	2.1	22	88	3	69	22	4	10	62	1.44
3626680--3626710	13	2.4	13	100	0	62	29	0	12	58	1.35
3627496--3627528	13	2.8	12	90	9	50	15	0	0	84	0.61
3627497--3627538	21	2.0	21	85	0	57	21	2	2	73	1.06
3635432--3635480	25	2.0	25	87	0	71	30	2	2	65	1.15
3635431--3635534	9	11.7	9	71	12	56	29	3	1	64	1.22
3637995--3638043	25	2.0	25	87	0	71	30	2	2	65	1.15
3637994--3638097	9	11.7	9	71	12	56	29	3	1	64	1.22
3647553--3647707	84	1.8	84	86	2	222	41	16	13	28	1.87
3648884--3648922	19	2.1	19	100	0	78	30	5	41	23	1.76
3649929--3650037	57	1.9	57	82	0	137	28	11	9	50	1.70
3650162--3650213	16	3.2	16	91	0	77	30	0	34	34	1.58
3650194--3650291	44	2.2	44	83	1	124	35	4	27	32	1.76
3650449--3650483	18	2.0	17	88	5	52	54	0	0	45	0.99
3654837--3654902	24	2.8	23	80	11	62	30	6	7	56	1.52
3654860--3654937	24	3.2	24	81	0	84	29	2	10	57	1.45
3657068--3657145	24	3.2	24	76	7	77	29	3	10	56	1.50
3662138--3662878	154	4.9	154	79	11	796	29	10	7	52	1.63
3662432--3662893	158	3.0	149	79	11	547	29	10	7	52	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3663232--3663325	10	10.1	9	68	25	54	0	26	0	73	0.84
3663268--3663328	14	4.4	13	76	19	61	0	22	0	77	0.78
3663265--3663335	28	2.5	28	80	11	83	0	25	0	74	0.82
3663225--3663325	38	2.6	38	79	13	100	0	27	0	71	0.93
3663946--3663970	4	6.2	4	100	0	50	48	0	0	52	1.00
3664675--3664713	21	1.9	20	84	5	51	23	5	20	51	1.67
3670036--3670259	104	2.2	104	96	2	416	45	4	7	42	1.51
3675470--3675513	14	3.2	14	74	6	54	47	0	9	43	1.35
3682534--3682599	24	2.8	23	72	17	64	62	0	0	37	0.96
3703223--3703269	23	2.0	23	100	0	94	12	12	21	53	1.72
3703441--3703474	17	2.0	17	88	0	50	29	5	0	64	1.17
3718499--3718605	55	1.9	55	92	0	178	31	38	5	24	1.78
3723919--3723956	18	2.1	18	100	0	76	63	5	0	31	1.17
3724674--3725277	301	2.0	302	99	0	1201	40	13	7	37	1.74
3730386--3730431	17	2.9	16	81	15	51	71	2	26	0	0.97
3731242--3731280	19	2.1	19	100	0	78	64	5	5	25	1.35
3731300--3731339	20	2.1	20	86	9	57	57	2	2	37	1.26
3731481--3731730	69	3.6	68	82	1	266	24	23	14	37	1.92
3738123--3738148	7	3.7	7	100	0	52	26	15	15	42	1.87
3739349--3739455	23	4.2	24	65	23	76	42	8	1	46	1.44
3739343--3739500	77	2.1	77	98	0	307	40	8	2	48	1.48
3753654--3753808	31	5.1	31	70	11	88	45	4	12	38	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3754385--3754427	19	2.3	19	80	8	52	55	2	0	41	1.12
3754740--3754803	10	6.4	10	72	17	53	28	4	0	67	1.11
3754731--3754873	9	14.5	10	68	18	61	37	3	0	58	1.20
3754731--3754802	19	3.7	19	72	18	67	31	4	0	63	1.13
3754765--3754817	10	5.1	11	76	17	51	37	1	0	60	1.08
3754795--3754872	29	2.7	27	77	18	68	42	2	1	53	1.22
3754809--3754871	30	2.1	30	82	11	76	41	1	1	55	1.19
3754958--3755002	20	2.2	20	88	0	63	40	17	15	26	1.90
3755060--3755223	88	1.9	86	81	6	197	33	10	18	37	1.85
3766681--3766721	17	2.4	18	80	19	52	34	0	0	65	0.93
3767485--3767527	12	3.5	12	84	15	61	13	9	0	76	1.01
3767485--3767527	11	3.6	11	87	12	59	13	9	0	76	1.01
3785753--3785786	17	1.9	18	88	5	52	38	0	11	50	1.39
3789250--3789310	30	2.0	30	90	0	95	26	3	13	57	1.51
3794029--3794056	5	5.6	5	100	0	56	39	0	0	60	0.97
3795524--3795568	17	2.6	17	86	10	56	71	4	0	24	1.05
3797699--3798173	237	2.0	238	99	0	943	41	15	9	33	1.80
3800093--3800163	21	3.4	21	80	0	88	18	21	16	43	1.88
3800091--3800209	42	2.8	42	79	5	116	17	25	16	40	1.90
3805209--3805273	21	3.1	21	63	20	55	32	15	16	35	1.91
3807124--3807319	100	2.0	101	92	1	331	36	16	12	34	1.87
3813207--3813237	16	1.9	16	93	0	53	6	0	35	58	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3814790--3814877	43	2.0	43	84	0	113	51	5	9	34	1.57
3815020--3815190	85	2.0	86	98	1	335	38	5	8	47	1.58
3815531--3815564	15	2.2	16	94	5	61	26	2	11	58	1.47
3823278--3823343	33	2.0	33	82	5	80	27	10	18	43	1.82
3823471--3823513	19	2.3	18	80	11	52	55	4	2	37	1.33
3827412--3827478	31	2.1	32	83	2	82	46	1	8	43	1.44
3831433--3831466	14	2.4	14	90	0	50	23	2	5	67	1.26
3831646--3832021	99	3.8	96	83	5	457	29	26	19	23	1.98
3831940--3832214	108	2.6	108	84	4	353	26	23	23	25	2.00
3837124--3837161	14	2.7	15	84	16	62	47	13	0	39	1.42
3841501--3841546	24	2.0	23	83	8	58	30	4	2	63	1.26
3842743--3842802	29	2.0	31	83	6	79	40	13	10	36	1.78
3842797--3842831	18	1.9	18	88	11	54	57	5	0	37	1.23
3844452--3844680	125	1.8	124	81	6	282	37	12	16	34	1.86
3845955--3845979	13	1.9	13	100	0	50	80	0	8	12	0.92
3850028--3850071	21	2.1	21	86	0	61	56	0	6	36	1.26
3853173--3853197	8	3.1	8	100	0	50	52	0	0	48	1.00
3853752--3854049	161	1.9	157	80	6	343	28	17	22	31	1.96
3856637--3857105	81	5.8	81	90	1	706	26	19	24	29	1.98
3862803--3863437	81	7.8	81	85	1	806	28	18	23	30	1.97
3865042--3865122	28	3.0	28	96	3	148	61	14	13	9	1.56
3870499--3870529	15	2.1	15	100	0	62	0	6	32	61	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3874279--3874307	14	2.0	15	93	6	51	44	0	13	41	1.44
3876457--3876534	30	2.5	32	81	10	90	47	1	2	48	1.23
3877500--3877664	82	2.0	83	98	1	323	41	3	10	44	1.57
3878563--3878623	27	2.3	26	83	5	77	68	4	1	24	1.18
3878593--3878632	20	2.0	21	90	5	64	67	0	2	30	1.04
3878573--3878624	27	1.9	27	96	0	95	71	0	1	26	0.97
3879069--3879242	88	2.0	88	85	4	235	43	9	13	33	1.77
3891561--3891730	82	2.1	83	98	1	333	44	3	7	44	1.48
3901403--3901429	4	6.8	4	100	0	54	22	0	0	77	0.76
3907584--3907700	61	1.9	60	91	1	189	23	23	22	29	1.99
3910947--3911012	32	2.1	32	100	0	132	63	3	27	6	1.32
3911624--3911667	21	2.1	21	95	0	79	34	40	9	15	1.79
3916874--3916993	44	2.8	43	78	15	131	28	25	20	26	1.99
3922812--3922859	24	2.0	24	84	8	62	16	4	2	77	1.03
3924608--3924655	20	2.4	20	86	13	64	56	8	0	35	1.30
3924625--3924662	19	2.1	18	85	14	51	55	5	0	39	1.23
3924653--3924692	19	2.2	19	90	4	64	52	0	0	47	1.00
3925852--3925885	5	6.8	5	93	0	59	17	2	0	79	0.86
3930668--3930706	20	2.0	20	89	0	60	48	12	10	28	1.74
3930655--3930721	34	1.9	35	87	3	100	44	13	8	32	1.75
3932591--3932627	6	6.3	6	93	6	67	48	0	0	51	1.00
3932591--3932625	17	2.1	17	100	0	70	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3934438--3934467	14	2.1	14	93	0	51	40	6	6	46	1.56
3935758--3936057	24	12.8	24	67	14	144	54	5	6	35	1.47
3935755--3936043	69	4.1	67	74	10	190	53	5	6	34	1.48
3936596--3936633	19	2.0	19	100	0	76	47	31	0	21	1.51
3943870--3943907	9	4.2	9	89	0	58	39	21	10	28	1.86
3943915--3943971	17	3.2	17	67	13	51	49	15	3	31	1.62
3943906--3943980	37	2.0	37	97	0	141	44	16	6	33	1.73
3943906--3943997	37	2.5	37	89	7	125	45	15	6	32	1.71
3944111--3944195	41	2.0	42	88	4	127	17	3	28	50	1.62
3958212--3958257	23	2.0	23	100	0	92	52	13	8	26	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163