genome.fa.s4.2.7.7.80.10.50.1000.81.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  81  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26484058--26484097	9	4.8	9	76	17	50	35	0	17	47	1.48
26484742--26484777	15	2.5	15	90	4	56	63	8	16	11	1.49
26497430--26497481	21	2.5	21	74	0	50	7	42	17	32	1.77
26504009--26504054	7	6.0	7	90	9	56	30	0	17	52	1.45
26504016--26504146	9	15.4	9	75	15	102	34	1	19	44	1.61
26504132--26504157	13	2.0	13	100	0	52	30	0	15	53	1.42
26504271--26504322	20	2.6	20	100	0	104	34	0	15	50	1.45
26504413--26504448	16	2.2	16	90	0	54	36	0	16	47	1.47
26504472--26504585	22	5.4	22	70	17	62	39	2	14	43	1.59
26504581--26504626	7	6.6	7	78	16	51	28	0	10	60	1.30
26504581--26504626	15	3.3	15	79	17	62	28	0	10	60	1.30
26504498--26504718	98	2.3	98	100	0	442	35	1	13	49	1.52
26504840--26504878	20	2.0	20	84	0	51	30	0	2	66	1.05
26505345--26505448	33	3.2	33	67	8	104	43	4	10	41	1.60
26505353--26505450	32	3.0	32	65	8	90	42	6	11	39	1.65
26507571--26507612	22	1.9	22	90	0	66	45	26	4	23	1.73
26507857--26507906	17	3.0	17	94	2	84	50	16	0	34	1.45
26508509--26508588	41	2.0	41	87	0	115	17	25	28	28	1.97
26508507--26508599	41	2.3	41	80	0	114	21	24	26	26	1.99
26508570--26508722	41	3.7	41	76	10	161	30	20	26	22	1.98
26508786--26508897	40	2.8	40	84	5	138	15	19	23	41	1.89
26508904--26508929	12	2.2	12	100	0	52	46	30	15	7	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26513217--26513261	12	3.8	12	84	0	63	2	35	31	31	1.70
26514278--26514368	35	2.6	34	75	3	101	36	21	18	23	1.95
26522859--26523228	179	2.1	181	85	3	496	29	22	18	29	1.97
26522919--26523220	89	3.4	89	75	13	296	29	22	18	29	1.97
26522963--26523214	44	5.7	43	69	14	154	30	22	18	28	1.97
26524912--26524953	12	3.8	11	90	9	68	0	21	0	78	0.75
26524912--26524953	5	7.8	5	85	15	57	0	21	0	78	0.75
26528964--26529014	18	2.9	16	81	16	57	68	5	5	19	1.31
26530195--26530243	19	2.8	17	79	14	55	16	0	8	75	1.03
26530588--26530641	20	2.7	19	80	5	54	24	24	12	38	1.90
26531706--26531789	22	3.8	22	75	0	87	44	17	25	13	1.85
26531706--26531792	44	2.0	44	86	0	120	43	18	24	13	1.86
26533106--26533164	31	1.9	30	92	0	91	49	10	6	33	1.63
26537927--26537951	2	12.5	2	100	0	50	48	0	0	52	1.00
26538127--26538354	41	5.6	41	92	1	350	20	30	20	28	1.98
26538120--26538382	123	2.1	123	83	3	332	23	29	20	27	1.99
26540062--26540120	28	2.0	31	83	9	79	50	5	0	44	1.24
26543373--26543406	14	2.3	15	90	5	52	38	23	5	32	1.79
26550425--26550468	17	2.7	15	83	10	52	61	9	0	29	1.27
26550493--26550523	16	1.9	16	93	0	53	67	0	0	32	0.91
26561518--26561608	40	2.3	40	81	5	103	41	16	16	25	1.89
26565763--26565802	18	2.1	20	90	9	66	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26567625--26568398	100	7.9	100	83	6	948	24	20	23	31	1.98
26567625--26568342	50	14.6	50	68	6	304	24	20	23	31	1.98
26568055--26568398	92	3.7	92	84	8	446	25	20	23	30	1.98
26567625--26568398	190	4.0	190	86	5	992	24	20	23	31	1.98
26568438--26568914	44	10.5	42	68	17	181	28	19	18	33	1.95
26568598--26568841	97	2.5	97	96	0	443	27	18	17	36	1.93
26569198--26569231	6	5.7	6	100	0	68	14	0	0	85	0.60
26570318--26570374	8	8.0	7	79	16	64	14	15	0	70	1.18
26570328--26570375	13	3.4	14	91	8	71	12	14	0	72	1.11
26570318--26570378	21	2.9	21	78	9	70	13	14	0	72	1.13
26575688--26575720	3	11.0	3	100	0	66	66	0	0	33	0.92
26581958--26581996	20	2.0	20	84	0	51	58	0	0	41	0.98
26581985--26582053	36	1.9	36	83	16	90	68	2	1	27	1.13
26581985--26582057	18	4.2	17	73	23	62	65	2	1	30	1.15
26616327--26616375	22	2.3	21	79	6	53	30	6	4	59	1.41
26617700--26617759	30	2.0	30	86	0	84	30	41	5	23	1.75
26618063--26618106	22	2.0	23	90	4	72	45	11	15	27	1.81
26623983--26624032	25	2.1	23	85	10	66	52	2	14	32	1.53
26624002--26624045	22	2.0	22	82	4	54	59	0	13	27	1.35
26646747--26646790	21	2.0	22	91	4	72	15	25	31	27	1.96
26656964--26656997	5	6.8	5	93	0	50	44	0	11	44	1.40
26657448--26657488	17	2.5	17	84	7	50	53	0	7	39	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26663459--26663497	18	2.2	18	86	9	53	66	0	30	2	1.05
26664181--26664229	25	2.0	25	83	0	62	40	0	16	42	1.48
26665666--26665760	48	2.0	49	85	2	129	42	5	25	27	1.76
26672190--26672275	43	2.0	43	86	0	118	47	2	23	26	1.63
26673521--26673617	49	2.0	49	93	0	167	43	6	26	23	1.77
26685771--26685860	45	2.0	45	97	0	171	33	11	18	36	1.87
26688781--26688969	94	2.0	95	98	1	371	38	20	3	38	1.68
26689142--26689176	15	2.3	15	90	9	54	51	22	0	25	1.48
26691120--26691176	28	2.0	28	86	6	80	38	5	0	56	1.22
26698484--26698540	28	2.0	28	90	6	89	38	5	0	56	1.22
26700216--26700465	83	3.0	83	100	0	500	45	16	6	31	1.72
26702479--26702777	148	2.0	149	98	0	582	41	10	8	40	1.69
26702747--26702815	27	2.5	28	90	6	106	39	8	1	50	1.42
26702873--26702952	27	3.0	27	94	0	133	27	28	30	13	1.94
26708400--26708443	22	2.0	23	90	4	72	43	0	9	47	1.35
26710172--26710233	22	3.0	20	75	11	54	40	11	11	37	1.77
26713644--26713685	20	2.1	20	86	0	57	47	0	7	45	1.30
26717646--26717722	3	25.7	3	77	21	56	27	6	0	66	1.16
26717648--26717722	13	5.9	13	75	17	61	26	6	0	66	1.16
26718097--26718137	20	2.0	21	86	13	59	26	9	0	63	1.25
26723560--26723621	23	2.5	24	79	15	72	75	0	16	8	1.02
26723580--26723629	16	3.2	16	73	23	52	74	0	18	8	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26724867--26724980	45	2.6	45	79	6	124	28	21	24	25	1.99
26724847--26725027	44	4.1	43	72	12	143	31	19	22	26	1.98
26725190--26725779	44	13.0	44	73	11	341	32	19	20	27	1.97
26726502--26726532	11	2.7	12	90	10	55	58	6	0	35	1.24
26728666--26728694	11	2.6	11	100	0	58	51	13	0	34	1.42
26729332--26729612	41	6.9	41	76	6	239	17	23	25	34	1.96
26729334--26729595	123	2.1	123	80	6	291	15	22	25	35	1.94
26744328--26744530	86	2.3	87	80	2	221	24	22	27	26	2.00
26744308--26744472	43	3.9	42	79	6	163	21	18	30	29	1.97
26744375--26744644	129	2.1	128	80	7	296	24	25	24	25	2.00
26748134--26748466	167	2.0	167	97	0	630	38	15	10	35	1.83
26756367--26756414	18	2.6	18	77	9	53	72	6	0	20	1.05
26761973--26761997	12	2.1	12	100	0	50	0	8	8	84	0.79
26784281--26784345	30	2.2	30	94	0	112	56	15	3	24	1.53
26784375--26784417	22	2.0	22	85	0	59	55	9	13	20	1.66
26785969--26786235	132	2.0	133	99	0	527	40	14	9	35	1.79
26788223--26788268	17	2.6	17	89	3	74	41	10	23	23	1.86
26790450--26790502	23	2.3	23	96	0	97	64	1	1	32	1.15
26792194--26792222	9	3.0	10	90	10	51	58	0	20	20	1.39
26792463--26792511	25	1.9	26	84	12	66	42	8	14	34	1.75
26793748--26793772	13	1.9	13	100	0	50	36	0	8	56	1.29
26798206--26798257	26	2.0	27	81	11	63	21	7	13	57	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26806611--26806638	14	2.0	14	100	0	56	28	50	0	21	1.49
26810927--26810954	13	2.2	13	100	0	56	28	21	7	42	1.79
26813353--26813403	23	2.3	23	83	12	63	35	3	3	56	1.36
26813571--26813634	16	4.0	16	89	0	101	39	1	34	25	1.65
26813622--26813710	44	2.0	46	86	4	128	29	4	30	35	1.77
26825487--26825564	33	2.4	33	84	0	93	39	30	7	21	1.82
26828615--26828639	4	6.2	4	100	0	50	24	24	0	52	1.48
26830917--26830956	20	2.0	20	90	0	62	45	15	10	30	1.78
26830907--26830971	34	1.9	33	84	9	87	41	15	9	33	1.79
26835308--26835365	6	9.8	6	83	3	64	75	5	1	17	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163