genome.fa.s4.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  32  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10262109--10262134	6	4.3	6	100	0	52	15	0	0	84	0.62
10268829--10268861	17	1.9	17	88	11	50	27	27	12	33	1.92
10270562--10270601	20	2.0	20	85	9	55	40	12	10	37	1.77
10276062--10276106	18	2.5	17	75	10	54	53	0	2	44	1.13
10280628--10280657	15	2.1	15	93	6	53	30	33	23	13	1.93
10283017--10283041	12	2.1	12	100	0	50	32	28	8	32	1.86
10284331--10284357	2	13.5	2	100	0	54	51	48	0	0	1.00
10284998--10285048	24	2.2	22	82	6	57	39	33	19	7	1.81
10285697--10285859	87	1.9	86	84	3	220	34	20	15	29	1.94
10294842--10295048	43	4.8	43	83	1	229	30	24	16	28	1.96
10294940--10295070	43	3.1	42	82	4	111	33	22	15	29	1.94
10296893--10297075	92	2.0	92	88	2	269	44	7	18	30	1.76
10297866--10298036	27	6.3	27	78	8	152	23	14	17	44	1.86
10297866--10298049	54	3.4	53	83	5	185	23	14	18	44	1.86
10297861--10298036	81	2.2	81	84	4	221	23	15	17	43	1.87
10297933--10298049	27	4.3	28	82	10	145	24	15	19	40	1.90
10297866--10298058	27	7.1	27	77	9	135	22	13	18	44	1.85
10304701--10304791	33	2.8	33	98	1	175	29	5	5	59	1.43
10317206--10317230	10	2.5	10	100	0	50	20	16	24	40	1.91
10330555--10330638	43	2.0	41	84	9	107	50	2	22	25	1.61
10331958--10332109	60	2.5	60	83	2	171	28	15	24	32	1.95
10331976--10332135	60	2.7	59	82	3	176	27	16	23	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10334003--10334078	29	2.6	29	100	0	152	38	7	30	23	1.83
10345130--10345202	31	2.4	31	83	4	85	52	6	1	39	1.37
10345162--10345215	22	2.5	21	76	5	54	51	9	1	37	1.45
10345872--10345907	18	1.9	19	88	5	56	5	5	47	41	1.50
10347518--10347565	7	6.7	7	77	13	53	75	2	2	20	1.02
10347518--10347565	21	2.2	22	88	3	71	75	2	2	20	1.02
10354743--10355155	151	2.7	146	84	5	495	22	31	22	23	1.98
10361442--10361600	40	4.0	40	81	0	174	18	28	16	35	1.93
10361449--10361600	80	1.9	80	83	2	198	19	29	16	34	1.93
10365146--10365202	20	2.8	20	81	0	60	47	1	29	21	1.61
10368517--10368597	26	3.1	26	87	0	117	37	23	19	19	1.95
10368768--10368927	27	6.0	27	87	1	223	20	16	21	41	1.90
10379239--10379318	26	3.1	26	89	1	117	37	25	18	18	1.94
10379471--10379655	27	6.9	26	81	8	140	22	16	20	41	1.90
10379483--10379654	54	3.2	51	81	8	182	21	16	18	43	1.88
10379482--10379654	81	2.1	81	84	6	226	21	16	19	42	1.89
10380347--10380423	26	3.0	26	82	0	82	36	20	19	23	1.95
10380564--10380631	27	2.5	26	88	9	84	26	23	16	33	1.95
10380580--10380689	27	4.1	27	84	5	125	26	18	18	37	1.93
10380593--10380704	54	2.1	54	88	3	163	25	18	17	38	1.93
10380591--10380705	27	4.3	27	80	4	124	25	19	17	38	1.93
10383965--10384069	41	2.6	41	87	0	138	33	25	21	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10390132--10390197	19	3.5	19	91	0	114	39	9	13	37	1.77
10390138--10390223	19	4.2	21	83	7	90	38	8	16	37	1.78
10396020--10396052	14	2.3	15	89	5	50	27	15	33	24	1.95
10397792--10398054	19	13.8	19	88	0	400	39	8	12	38	1.74
10397799--10398054	38	6.7	38	98	0	494	40	8	12	39	1.73
10399873--10399904	16	2.0	16	100	0	64	31	12	25	31	1.92
10402236--10402366	43	3.0	45	76	8	135	27	22	18	32	1.97
10405176--10405220	22	2.0	22	87	8	65	53	20	0	26	1.46
10423706--10423756	25	2.0	26	81	11	61	76	5	13	3	1.11
10423778--10423813	18	1.9	18	88	5	54	63	2	27	5	1.30
10428399--10428424	9	2.9	9	100	0	52	69	11	0	19	1.18
10432243--10432274	12	2.7	12	95	0	55	21	43	28	6	1.77
10440166--10440198	15	2.1	16	88	5	50	75	6	15	3	1.11
10441051--10441141	41	2.2	41	92	0	146	34	16	19	29	1.94
10441076--10442064	216	4.6	216	89	0	1424	26	24	19	29	1.98
10441090--10442064	431	2.3	432	88	0	1414	26	24	19	29	1.98
10442109--10442270	88	1.8	88	84	2	218	22	27	25	24	2.00
10442108--10442311	88	2.3	88	78	3	205	22	26	25	25	2.00
10443737--10443785	19	2.8	17	81	9	62	2	10	4	83	0.85
10443737--10443784	8	5.5	8	77	18	51	2	10	4	83	0.87
10443737--10443785	9	5.4	9	76	9	55	2	10	4	83	0.85
10444619--10444712	7	13.7	7	75	9	54	6	11	3	78	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10444617--10444653	6	6.2	6	93	0	65	0	18	0	81	0.70
10444644--10444697	15	3.7	15	74	13	51	11	5	5	77	1.10
10445789--10445854	25	2.6	25	85	9	80	57	6	16	19	1.60
10453483--10453535	26	2.0	26	85	0	70	24	33	16	24	1.96
10456149--10456249	20	5.1	20	75	4	87	15	29	18	35	1.93
10456123--10456249	40	3.2	40	82	2	157	14	29	18	36	1.92
10460732--10461016	144	2.0	144	92	0	471	23	12	24	39	1.89
10473850--10473896	13	3.6	13	88	0	67	42	17	0	40	1.49
10483737--10483798	33	2.0	32	85	14	87	38	1	12	46	1.52
10484348--10484434	26	3.4	26	76	4	97	22	14	22	39	1.91
10507982--10508043	30	2.1	30	84	6	81	50	11	6	32	1.64
10520691--10520750	27	2.2	27	96	0	111	20	16	15	48	1.81
10542503--10542541	19	2.1	19	85	9	53	33	5	2	58	1.33
10544026--10544440	206	2.0	206	97	0	785	33	19	10	36	1.86
10546009--10546109	3	33.7	3	95	0	184	31	0	34	33	1.58
10547019--10547075	16	3.6	16	95	0	87	29	0	36	33	1.58
10547321--10547355	18	2.0	17	88	5	52	54	0	0	45	0.99
10562193--10562222	11	2.8	11	95	5	53	33	16	0	50	1.46
10562245--10562284	16	2.5	16	91	0	62	32	27	2	37	1.70
10563350--10563399	25	2.1	23	85	10	66	28	0	2	70	0.99
10564060--10564104	16	2.6	18	86	10	58	28	2	2	66	1.15
10563192--10564653	724	2.0	728	98	0	2851	28	14	22	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10565306--10566077	126	6.1	126	86	2	1018	28	17	16	37	1.91
10565306--10566077	251	3.1	250	86	3	1025	28	17	16	37	1.91
10566163--10566248	34	2.7	32	87	8	129	41	16	0	41	1.48
10566285--10566332	6	6.7	7	84	15	55	45	41	0	12	1.42
10569530--10569563	16	2.2	16	94	5	61	52	11	5	29	1.61
10572672--10572705	14	2.4	15	90	9	54	52	32	11	2	1.53
10572740--10572900	41	3.9	41	86	4	225	24	19	23	31	1.98
10573002--10573052	26	2.0	26	84	0	66	58	5	11	23	1.55
10573312--10573344	14	2.3	15	94	5	59	30	0	33	36	1.58
10573364--10573397	7	4.9	7	85	0	50	20	0	50	29	1.49
10573604--10573694	46	2.0	46	97	0	173	28	4	30	36	1.77
10574631--10574670	20	2.0	20	85	5	53	27	42	0	30	1.56
10574750--10574818	36	1.9	36	96	0	129	23	2	17	56	1.54
10574744--10574809	19	3.5	19	72	17	66	24	4	18	53	1.63
10574759--10574821	17	3.3	21	70	25	75	22	3	17	57	1.54
10575367--10575402	2	18.0	2	100	0	72	50	0	50	0	1.00
10578804--10578943	43	3.2	42	85	5	181	25	17	32	25	1.97
10582168--10582201	16	2.2	16	94	5	61	52	14	5	26	1.64
10594212--10594427	52	4.2	52	93	0	351	28	30	16	24	1.96
10595362--10595391	11	2.7	11	89	0	51	26	0	6	66	1.16
10599698--10599961	88	3.0	88	100	0	528	35	15	18	30	1.92
10601685--10601738	26	2.2	24	93	6	90	51	3	7	37	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10602733--10602793	15	4.1	15	72	16	54	57	1	11	29	1.44
10604893--10604917	12	2.1	12	100	0	50	28	16	40	16	1.89
10612827--10613058	12	19.3	12	90	0	329	50	28	1	19	1.58
10612819--10613058	16	15.0	16	90	0	345	50	29	1	18	1.57
10620005--10622766	8	345.5	8	98	0	5231	49	25	0	24	1.52
10620005--10622766	12	230.3	12	98	0	5231	49	25	0	24	1.52
10633985--10634166	84	2.2	84	77	2	195	29	26	17	26	1.98
10633985--10634166	56	3.2	56	81	3	197	29	26	17	26	1.98
10633952--10634184	28	8.3	28	76	1	162	29	26	17	26	1.97
10638638--10638686	20	2.5	20	81	15	66	12	24	6	57	1.58

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163