genome.fa.s4.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  162  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54748438--54749091	324	2.0	325	99	0	1292	44	11	6	38	1.66
54765188--54765247	29	2.0	31	84	12	81	58	3	0	38	1.15
54768365--54768409	22	2.0	22	83	8	56	42	0	13	44	1.43
54768783--54768817	16	2.1	17	89	5	54	80	14	0	5	0.89
54768850--54768885	16	2.2	16	90	0	54	27	0	2	69	1.02
54785396--54785433	15	2.6	15	91	4	60	5	5	23	65	1.34
54788302--54788355	16	3.4	16	86	0	72	29	31	1	37	1.68
54802408--54802471	30	2.1	30	82	0	74	45	10	4	39	1.60
54835323--54835359	3	12.3	3	94	0	65	29	0	2	67	1.04
54838119--54838180	23	2.7	24	80	14	69	30	4	0	64	1.14
54843199--54843263	26	2.4	27	78	16	73	46	0	1	52	1.10
54843884--54844171	151	1.9	151	87	2	418	31	12	14	40	1.83
54854624--54854728	30	3.5	30	71	16	81	30	8	8	52	1.62
54858902--54858967	30	2.1	31	81	15	75	43	1	4	50	1.32
54865556--54865598	18	2.4	18	100	0	86	34	0	9	55	1.32
54878717--54878750	2	17.0	2	100	0	68	50	0	50	0	1.00
54880688--54880739	12	4.3	12	75	0	59	38	25	9	26	1.86
54880681--54880734	20	2.7	20	79	0	63	40	25	7	25	1.82
54881760--54881799	3	14.7	3	80	19	52	72	0	0	27	0.85
54881760--54881799	5	7.3	6	91	8	52	72	0	0	27	0.85
54890506--54890546	21	2.0	21	85	9	57	56	9	12	21	1.65
54900784--54900899	59	2.0	59	84	5	155	30	19	13	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54908816--54908908	33	2.8	33	88	0	132	30	48	11	9	1.72
54925059--54925116	22	2.7	21	81	5	80	31	3	3	62	1.29
54937680--54937756	22	3.5	22	84	13	104	44	1	29	24	1.62
54937682--54937755	11	6.6	11	78	6	78	43	1	31	24	1.63
54947090--54947283	64	3.0	64	100	0	388	38	15	30	15	1.89
54952595--54952670	30	2.6	30	81	6	84	42	15	9	32	1.79
54953922--54954251	163	2.0	163	97	0	615	32	20	15	32	1.93
54962610--54962669	29	2.1	28	81	6	68	23	10	16	50	1.75
54962989--54963044	24	2.3	23	77	16	60	32	0	3	64	1.11
54964790--54965134	121	2.8	121	90	3	541	33	21	16	29	1.95
54965424--54965479	29	1.9	28	82	13	69	50	12	10	26	1.73
54972191--54972254	16	3.8	16	77	6	56	56	1	7	34	1.38
54972211--54972254	17	2.5	19	82	14	58	56	2	9	31	1.43
54974433--54974507	36	2.1	36	100	0	150	30	5	36	28	1.79
54978156--54978190	12	2.9	12	86	0	52	42	5	0	51	1.25
54980545--54980574	9	3.3	9	95	0	51	56	3	0	40	1.16
54980549--54980582	9	3.7	9	92	4	50	58	5	0	35	1.22
54980606--54980639	17	2.0	17	94	0	59	67	2	0	29	1.05
54986462--54986501	21	2.0	20	85	5	53	57	17	2	22	1.52
55009480--55009544	31	2.1	31	85	5	87	30	10	12	46	1.76
55011426--55011478	13	4.1	13	82	0	52	35	24	7	32	1.84
55022763--55022791	1	29.0	1	100	0	58	100	0	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55027883--55028102	110	2.0	110	96	1	406	37	14	17	31	1.89
55032123--55032191	31	2.2	31	89	0	102	40	13	7	39	1.72
55034797--55034966	84	2.0	85	98	1	333	42	9	4	43	1.58
55036079--55036145	29	2.3	29	78	0	71	22	14	19	43	1.87
55043467--55043578	57	2.0	57	82	3	136	30	16	11	41	1.83
55054834--55054885	3	17.3	3	100	0	104	32	0	0	67	0.91
55058572--55058610	5	7.8	5	100	0	78	82	0	17	0	0.68
55070511--55070650	71	2.0	72	87	4	203	26	21	7	45	1.77
55072049--55072136	30	2.9	30	87	0	131	27	3	36	32	1.74
55072366--55072423	30	1.9	30	92	0	98	24	5	37	32	1.77
55072498--55072555	30	1.9	30	96	0	107	24	3	37	34	1.72
55072498--55072547	17	3.2	16	72	21	52	20	4	38	38	1.71
55072351--55072599	132	1.9	132	98	0	480	30	8	30	31	1.86
55073967--55074015	3	16.3	3	100	0	98	32	0	0	67	0.91
55076459--55076499	11	3.7	11	84	12	57	29	0	48	21	1.50
55076641--55076694	6	9.3	6	78	13	51	20	3	9	66	1.35
55076633--55076689	29	1.9	30	96	3	107	17	7	8	66	1.41
55078475--55078526	19	2.8	19	88	2	70	32	19	19	28	1.96
55078694--55078746	18	2.9	18	80	2	61	41	45	1	11	1.51
55078844--55078883	9	4.4	9	87	0	62	27	10	20	42	1.83
55081026--55081083	14	4.1	14	78	12	64	43	13	8	34	1.75
55082049--55082103	29	1.9	28	85	10	76	29	9	10	50	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55091078--55091141	5	12.8	5	86	6	94	37	20	3	39	1.68
55096649--55096709	30	2.0	30	100	0	122	54	9	19	16	1.70
55098978--55099010	17	1.9	17	100	0	66	18	0	0	81	0.68
55103625--55103649	6	4.2	6	100	0	50	0	48	0	52	1.00
55118411--55118543	67	2.0	67	100	0	266	42	18	13	25	1.86
55125876--55125948	32	2.2	33	80	9	87	58	6	4	30	1.43
55133352--55133376	4	6.2	4	100	0	50	48	28	0	24	1.52
55139996--55140065	30	2.3	29	88	9	104	58	0	2	38	1.13
55143222--55143257	17	2.1	17	100	0	72	41	8	11	38	1.71
55147437--55147467	2	15.5	2	93	0	53	48	0	3	48	1.17
55150224--55150248	9	2.8	9	100	0	50	20	68	12	0	1.21
55154893--55154954	29	2.1	30	81	3	72	37	11	16	35	1.84
55161450--55161829	207	1.9	201	87	5	566	47	15	14	22	1.81
55164896--55164953	20	3.1	18	76	11	62	36	3	0	60	1.14
55168081--55168241	79	2.0	80	98	1	315	33	13	4	47	1.65
55198978--55199003	2	13.0	2	100	0	52	50	0	50	0	1.00
55218976--55219000	5	5.0	5	100	0	50	40	20	40	0	1.52
55241874--55241898	6	4.2	6	100	0	50	32	0	52	16	1.44
55242391--55242416	3	8.7	3	100	0	52	65	0	34	0	0.93
55255342--55255402	31	2.0	30	87	6	88	45	11	8	34	1.70
55278173--55278227	25	2.2	25	93	0	92	20	20	21	38	1.94
55283005--55283249	119	2.0	120	97	2	465	35	17	21	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55286486--55286519	15	2.2	15	89	5	50	61	2	0	35	1.11
55302866--55302929	32	2.0	32	90	0	101	37	14	9	39	1.78
55305619--55305728	50	2.2	50	83	6	134	20	20	24	34	1.96
55308942--55308977	3	13.0	3	88	11	51	72	0	0	27	0.85
55310781--55310836	4	13.8	4	81	3	67	71	3	25	0	1.02
55310756--55310822	29	2.3	29	84	2	89	70	2	25	1	1.10
55310782--55310844	20	3.1	20	81	2	72	71	3	25	0	1.01
55310880--55310987	37	2.7	38	80	9	119	26	12	20	40	1.87
55311143--55311182	20	2.0	20	100	0	80	40	10	20	30	1.85
55313982--55314007	3	8.7	3	100	0	52	65	0	0	34	0.93
55325020--55325056	10	3.5	10	86	13	56	21	27	0	51	1.48
55326718--55326816	30	3.3	30	80	2	92	30	43	17	9	1.80
55329068--55329355	125	2.3	124	88	1	432	28	20	19	31	1.97
55335749--55335798	26	1.9	26	83	0	64	34	8	24	34	1.84
55338156--55338523	188	2.0	181	89	4	567	29	24	22	23	1.99
55339503--55339583	42	1.9	42	82	9	103	18	25	35	19	1.95
55343561--55343623	24	2.6	24	85	9	76	33	22	26	17	1.96
55343587--55343633	24	2.0	24	91	0	76	36	19	27	17	1.93
55345438--55345477	13	3.1	13	77	0	53	27	7	30	35	1.84
55355524--55355581	30	1.9	30	83	13	75	50	1	5	43	1.35
55365344--55365391	25	2.0	24	87	4	69	39	22	22	14	1.91
55365465--55365514	26	2.0	26	92	4	84	34	24	26	16	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55365466--55365531	26	2.6	26	83	7	73	34	22	25	16	1.95
55367569--55367593	7	3.6	7	100	0	50	56	0	12	32	1.36
55367641--55367689	17	2.9	16	81	6	53	73	2	24	0	0.94
55367621--55367705	25	3.4	24	82	11	91	70	1	27	1	1.02
55367633--55367696	4	15.5	4	75	12	58	71	1	26	0	0.94
55367927--55367981	29	1.9	28	85	10	76	34	1	23	40	1.66
55368481--55368582	37	2.6	38	83	6	125	25	12	23	38	1.90
55368487--55368611	37	3.2	39	75	14	123	24	12	24	38	1.90
55372442--55372601	25	6.6	25	83	9	183	37	22	23	16	1.93
55380276--55380343	25	2.8	24	70	12	59	54	1	7	36	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163