genome.fa.s4.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  95  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30496897--30496921	9	2.8	9	100	0	50	32	12	12	44	1.78
30496988--30497018	9	3.4	9	90	0	53	38	22	12	25	1.90
30501852--30501895	24	1.9	24	81	9	56	40	4	2	52	1.34
30509854--30509910	20	2.7	21	86	5	71	10	29	21	38	1.87
30509862--30509910	22	2.3	20	86	6	62	10	30	20	38	1.86
30513547--30513612	24	2.7	24	79	11	71	25	18	24	31	1.97
30513567--30513639	24	3.0	24	84	9	94	28	20	24	26	1.99
30517663--30517700	20	2.0	20	94	5	69	26	10	13	50	1.73
30518127--30518165	21	1.9	21	89	5	62	41	25	5	28	1.77
30524417--30524502	42	2.0	42	100	0	172	17	11	32	38	1.86
30530462--30530504	2	22.0	2	85	4	61	48	0	2	48	1.14
30532898--30532984	25	3.5	25	69	13	72	25	17	12	44	1.83
30532879--30532959	23	3.4	23	69	12	65	24	18	16	40	1.90
30532879--30533107	48	4.7	48	85	6	289	25	16	15	42	1.87
30532879--30533107	100	2.3	96	83	4	298	25	16	15	42	1.87
30540088--30540171	42	2.0	41	86	2	114	26	16	25	32	1.96
30540766--30540852	25	3.5	25	69	13	81	24	17	13	44	1.85
30540747--30540875	23	5.4	23	65	14	73	25	17	15	41	1.89
30540747--30540977	48	4.7	48	83	8	284	25	16	15	43	1.86
30540747--30540977	102	2.3	96	83	5	293	25	16	15	43	1.86
30558603--30558718	27	4.3	27	80	1	117	43	19	18	18	1.88
30558867--30558966	26	3.8	26	82	2	94	17	22	22	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30559080--30559136	28	2.0	28	89	0	87	22	24	24	28	2.00
30562387--30562434	7	6.9	7	97	0	87	41	2	14	41	1.57
30563328--30563364	9	4.1	9	92	0	65	45	13	10	29	1.77
30564185--30564210	5	5.2	5	100	0	52	19	19	19	42	1.90
30564807--30565067	130	2.0	130	100	0	522	21	13	25	39	1.90
30569221--30569260	21	1.9	21	94	0	71	20	30	10	40	1.85
30586409--30586988	84	6.8	84	79	7	494	32	11	10	45	1.75
30586240--30586988	165	4.5	169	76	9	592	32	11	9	45	1.74
30587004--30587130	59	2.2	59	81	2	148	25	10	13	51	1.72
30589819--30589854	10	3.5	10	92	3	54	50	0	25	25	1.50
30593656--30593706	24	2.2	24	77	22	56	33	0	5	60	1.21
30593864--30593901	14	2.6	14	84	15	51	36	7	5	50	1.54
30594793--30594858	13	5.1	13	81	7	89	37	24	6	31	1.80
30607986--30608574	292	2.0	293	99	0	1164	44	7	4	43	1.52
30609094--30609138	20	2.2	20	80	0	54	37	26	8	26	1.86
30612572--30612606	1	35.0	1	100	0	70	0	0	0	100	0.00
30615647--30615723	14	5.0	15	71	20	52	42	15	9	32	1.78
30615663--30615702	20	2.0	20	90	0	62	50	12	10	27	1.72
30615651--30615717	34	1.9	35	90	3	109	46	13	8	31	1.74
30615686--30615725	14	2.9	14	84	0	53	42	17	7	32	1.77
30622653--30623029	185	2.0	186	96	2	702	33	21	10	33	1.88
30624192--30624233	18	2.3	19	83	4	50	78	4	14	2	1.01
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30624192--30624232	19	2.1	20	82	13	50	80	4	12	2	0.97
30624863--30624902	3	13.3	3	100	0	80	32	0	0	67	0.91
30634251--30634293	3	14.3	3	90	0	68	30	4	0	65	1.13
30637435--30637477	17	2.6	17	82	10	54	60	9	0	30	1.28
30637435--30637477	16	2.6	17	79	13	54	60	9	0	30	1.28
30649405--30649441	19	1.9	19	88	0	56	56	8	2	32	1.43
30649763--30650082	113	2.8	111	80	9	333	55	15	3	25	1.55
30650740--30650791	24	2.2	24	96	0	95	44	42	5	7	1.57
30657644--30657705	28	2.2	28	97	0	115	30	3	3	62	1.26
30658132--30658176	18	2.5	18	92	0	72	2	60	0	37	1.09
30660542--30660608	34	1.9	35	84	3	91	47	11	7	32	1.68
30662675--30662738	19	3.4	18	72	22	51	64	1	6	28	1.27
30668951--30668980	11	2.7	11	100	0	60	80	0	0	20	0.72
30669054--30669285	115	2.0	116	99	0	457	40	6	10	41	1.66
30671103--30671208	32	3.3	32	66	21	94	42	10	16	30	1.82
30671070--30671252	33	5.6	33	66	21	125	38	12	19	29	1.88
30671069--30671241	65	2.7	65	100	0	346	39	12	18	29	1.87
30671198--30671273	33	2.3	32	77	6	80	35	18	21	25	1.95
30671302--30671378	33	2.3	32	80	6	82	33	18	22	25	1.96
30682616--30682662	21	2.2	21	100	0	94	34	0	23	42	1.54
30689259--30689321	30	2.1	30	96	0	117	23	3	15	57	1.53
30690027--30690090	30	2.2	30	94	2	112	28	31	3	37	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30698254--30698298	16	2.9	16	87	9	58	48	0	8	42	1.34
30700532--30700556	12	2.1	12	100	0	50	44	16	16	24	1.86
30706367--30706392	13	2.0	13	100	0	52	15	7	7	69	1.35
30708924--30708951	13	2.2	13	100	0	56	46	21	21	10	1.81
30712926--30713133	41	5.1	41	89	0	290	22	26	14	36	1.93
30712961--30713027	20	3.3	20	66	4	62	19	31	13	35	1.90
30721831--30721895	30	2.2	30	94	0	112	58	15	4	21	1.55
30723412--30724010	92	6.5	92	92	1	959	43	16	6	33	1.74
30725493--30725603	25	4.5	25	68	7	84	34	21	23	20	1.97
30725558--30725720	73	2.2	72	80	5	166	36	20	23	20	1.95
30725593--30725748	25	6.3	25	74	11	126	35	19	24	20	1.96
30727194--30727491	148	2.0	149	99	0	589	36	10	10	42	1.72
30729578--30729627	24	2.1	24	96	0	91	42	14	0	44	1.44
30732218--30732276	22	2.9	20	79	16	59	59	3	6	30	1.40
30732216--30732294	30	2.5	30	78	12	77	62	3	5	29	1.34
30732225--30732276	22	2.5	20	84	12	61	59	3	5	30	1.39
30733956--30734167	88	2.4	88	82	3	212	29	23	16	30	1.96
30734000--30734161	44	3.7	44	74	6	166	28	24	16	30	1.96
30734207--30734330	44	2.8	43	91	3	203	33	25	14	27	1.94
30747970--30748000	14	2.1	15	94	5	55	41	0	3	54	1.16
30748495--30748561	27	2.5	27	95	2	118	44	0	11	43	1.41
30749256--30749322	27	2.5	27	95	2	118	43	11	0	44	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30749991--30750057	27	2.5	27	95	2	118	44	0	11	43	1.41
30754332--30755320	507	1.9	508	98	0	1935	31	18	9	40	1.83
30756625--30756674	26	1.9	26	100	0	100	32	20	8	40	1.81
30758728--30758775	10	5.0	10	80	14	57	68	2	0	29	1.01
30758728--30758775	19	2.5	19	83	12	71	68	2	0	29	1.01
30758728--30758773	9	4.9	9	84	7	56	69	2	0	28	1.00
30758728--30758793	18	3.5	19	80	12	73	63	3	1	31	1.19
30765653--30765678	11	2.4	11	100	0	52	26	0	0	73	0.84
30765637--30765708	29	2.4	30	82	11	85	30	1	0	68	0.99
30765672--30765714	11	3.9	11	76	11	52	32	0	0	67	0.91
30765730--30765808	41	1.9	41	89	0	122	21	24	16	37	1.93
30767814--30767902	29	3.0	29	78	6	99	34	19	6	39	1.78
30771198--30771237	21	1.9	21	84	0	53	42	2	17	37	1.63
30776739--30776763	13	1.9	13	100	0	50	48	0	8	44	1.32
30780862--30780927	25	2.6	25	85	4	89	40	21	21	16	1.91
30791137--30791460	44	7.5	44	70	16	203	28	21	20	29	1.98
30791257--30791417	85	1.9	85	83	7	211	27	22	20	28	1.99
30791078--30791482	129	3.1	129	88	0	578	28	22	19	30	1.98
30791480--30792333	131	6.5	131	92	0	1386	26	23	20	29	1.98
30791480--30792328	44	19.4	44	64	13	194	26	23	19	30	1.98
30793210--30793245	17	2.1	17	100	0	72	5	16	0	77	0.94
30800398--30800546	48	3.1	48	96	1	266	25	13	20	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30800583--30800623	21	2.0	21	95	0	73	31	7	0	60	1.24
30803710--30803752	23	1.9	23	85	4	61	41	25	13	18	1.88
30804656--30804699	21	2.2	21	84	8	56	63	4	22	9	1.42
30804656--30804710	21	2.5	22	78	21	53	67	3	21	7	1.31
30807096--30807143	18	2.6	19	83	9	55	56	2	0	41	1.11
30812824--30812875	24	2.2	24	92	0	86	36	1	9	51	1.46
30818131--30818239	42	2.5	43	85	8	159	9	19	18	53	1.71
30818131--30818237	45	2.5	44	90	4	164	9	19	17	53	1.71
30824799--30825090	96	3.0	96	95	0	512	27	9	24	39	1.86
30828386--30828762	188	2.0	189	98	0	729	52	16	12	17	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163