genome.fa.s4.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  72  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23643067--23643292	26	8.5	26	84	5	267	15	21	19	42	1.88
23643248--23643333	44	2.0	44	88	2	129	13	23	15	47	1.81
23648211--23648250	12	3.5	12	80	13	57	42	0	2	55	1.13
23648211--23648252	22	1.9	22	100	0	84	42	0	2	54	1.13
23653592--23653616	8	3.1	8	100	0	50	60	0	0	40	0.97
23656381--23656451	35	2.0	35	100	0	142	30	12	28	28	1.93
23657242--23657297	24	2.3	24	84	9	69	23	23	25	28	1.99
23672248--23672293	4	11.5	4	90	0	74	47	26	0	26	1.52
23690429--23690471	18	2.3	19	88	4	61	44	2	20	32	1.65
23692152--23692181	12	2.5	12	100	0	60	33	26	16	23	1.96
23700948--23701327	188	2.0	192	91	2	624	38	18	11	32	1.86
23701897--23701951	15	3.8	15	76	13	53	56	5	0	38	1.23
23706620--23706989	182	2.0	183	98	0	724	38	15	9	37	1.80
23706944--23707012	30	2.3	30	79	2	75	49	7	0	43	1.30
23712161--23712190	15	2.0	15	93	0	51	43	0	3	53	1.17
23714887--23714926	19	2.1	19	85	0	53	50	0	5	45	1.23
23721441--23721470	2	15.0	2	100	0	60	0	0	50	50	1.00
23726712--23727067	78	4.6	78	93	0	570	38	5	13	42	1.66
23726722--23727168	78	5.8	77	86	4	386	37	4	14	43	1.67
23727237--23727428	78	2.5	76	81	6	217	37	3	18	40	1.68
23727765--23727880	41	2.8	42	85	6	148	28	18	27	25	1.98
23730626--23730874	108	2.3	108	97	0	471	35	19	16	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23733172--23733721	44	12.7	44	69	11	228	28	22	18	30	1.97
23733108--23733418	129	2.4	128	89	1	462	28	21	20	29	1.98
23733270--23733765	175	2.9	175	89	1	730	28	21	19	30	1.98
23743335--23743612	108	2.6	108	95	0	493	35	19	16	28	1.93
23743907--23743945	3	13.0	3	100	0	78	66	0	0	33	0.92
23747464--23747510	19	2.5	19	86	6	60	27	19	6	46	1.74
23747653--23747700	24	2.0	24	83	0	60	43	20	25	10	1.83
23754630--23754765	52	2.6	54	89	2	213	44	18	25	11	1.84
23755926--23756092	44	3.8	45	79	7	146	28	22	26	22	1.99
23757814--23757856	21	2.0	22	82	13	54	11	4	6	76	1.13
23757881--23757919	18	2.2	18	95	0	69	28	2	2	66	1.18
23759572--23759604	17	1.9	17	100	0	66	51	30	0	18	1.46
23761391--23761475	44	1.9	44	92	0	143	30	12	10	45	1.76
23769553--23769586	17	2.0	17	94	0	59	35	8	5	50	1.58
23769982--23770297	17	17.9	17	72	12	210	44	12	11	31	1.77
23769985--23770346	35	10.2	36	72	13	155	43	11	12	33	1.78
23769985--23770306	35	9.1	35	75	12	207	43	11	11	32	1.78
23769982--23770297	18	17.9	18	74	11	235	44	12	11	31	1.77
23770247--23770326	18	4.0	22	72	19	77	37	7	12	42	1.71
23770229--23770330	39	2.7	38	86	4	145	39	7	14	38	1.75
23770229--23770345	37	3.1	36	80	8	135	37	8	14	39	1.77
23770574--23770616	19	2.3	19	83	0	59	30	11	16	41	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23770774--23770800	14	1.9	14	100	0	54	81	3	0	14	0.82
23770935--23770990	8	7.6	8	77	18	52	0	19	0	80	0.71
23770932--23771018	14	6.4	14	80	11	74	0	22	0	77	0.78
23770936--23770991	22	2.6	21	81	10	69	0	19	0	80	0.71
23770933--23771006	10	7.0	10	75	15	69	0	21	0	78	0.75
23771144--23771193	21	2.5	20	75	12	59	0	12	16	72	1.13
23771262--23771380	7	16.9	7	82	7	91	0	23	0	75	0.85
23771277--23771380	4	26.0	4	81	14	117	0	25	0	74	0.83
23771495--23771547	21	2.7	21	82	8	67	0	18	7	73	1.06
23771841--23771945	29	3.6	29	79	6	104	42	3	20	33	1.70
23772154--23772469	79	4.0	79	92	1	508	33	19	16	29	1.94
23772128--23772469	78	4.4	78	90	4	512	33	20	16	29	1.95
23772178--23772469	157	1.8	158	94	2	516	32	21	18	28	1.96
23772358--23772585	116	2.0	116	94	0	402	30	24	18	26	1.98
23772474--23773347	78	11.8	76	88	5	878	35	20	17	26	1.94
23772276--23772655	194	2.0	195	94	0	663	31	22	18	27	1.97
23772588--23772999	67	6.0	67	92	4	635	35	21	17	25	1.95
23774201--23774258	1	58.0	1	75	0	53	0	3	8	87	0.64
23774191--23774241	23	2.2	23	82	0	57	0	9	5	84	0.78
23774201--23774258	13	4.5	13	80	6	64	0	3	8	87	0.64
23774198--23774257	29	2.1	30	84	6	79	0	5	8	86	0.69
23774208--23774258	15	3.4	15	84	10	68	0	1	9	88	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23774202--23774258	30	1.9	29	89	3	87	0	3	8	87	0.64
23781651--23781975	17	18.5	17	71	10	190	43	11	12	32	1.78
23781684--23781760	19	4.2	19	77	9	79	44	12	6	36	1.69
23781654--23781999	35	9.8	36	75	12	195	43	11	12	32	1.78
23781899--23781985	20	4.6	19	76	11	81	40	9	12	37	1.75
23781693--23781999	18	17.1	18	69	15	165	43	11	13	31	1.79
23781917--23781995	20	4.1	20	79	9	76	39	7	11	41	1.70
23781864--23781999	37	3.7	37	78	13	138	41	9	12	36	1.76
23781899--23782014	37	3.1	35	77	10	115	38	8	13	38	1.76
23782187--23782271	18	4.4	18	72	16	73	37	10	15	36	1.82
23782424--23782479	17	3.4	16	76	9	51	64	3	1	30	1.21
23782664--23782697	18	1.9	18	88	5	52	44	11	20	23	1.84
23782932--23783001	11	6.1	11	78	15	61	1	21	0	77	0.85
23782936--23782985	7	6.9	7	80	15	57	0	18	0	82	0.68
23782934--23782985	9	5.9	8	77	18	50	0	17	0	82	0.66
23782944--23782989	19	2.4	19	86	10	67	0	17	0	82	0.67
23782950--23783001	20	2.5	21	81	12	63	1	23	0	75	0.91
23782934--23783000	34	1.9	35	85	11	93	1	19	0	79	0.82
23783134--23783187	16	3.2	17	81	7	65	0	12	20	66	1.24
23783248--23783313	1	66.0	1	72	0	51	10	3	0	86	0.68
23783249--23783302	7	7.9	7	95	4	101	12	0	0	87	0.56
23783301--23783396	4	24.0	4	80	16	101	0	26	0	73	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23783256--23783396	7	19.9	7	84	7	90	4	17	0	78	0.92
23783302--23783396	30	3.0	33	82	14	103	0	26	0	73	0.83
23783498--23783556	8	6.3	9	73	21	50	0	16	6	76	1.00
23783741--23783814	29	2.5	29	80	4	85	27	12	13	47	1.78
23784365--23784433	29	2.3	30	87	5	95	49	14	14	21	1.79
23784652--23784755	28	3.6	29	78	3	120	43	3	20	32	1.70
23784681--23784766	30	3.0	28	76	8	91	48	4	16	30	1.66
23784651--23784766	58	2.0	58	88	3	171	45	4	18	31	1.69
23800710--23800769	20	3.0	21	80	9	72	13	25	16	45	1.84
23803812--23803846	14	2.5	14	90	0	52	37	0	48	14	1.44
23813528--23813567	2	20.5	2	94	5	73	50	0	0	50	1.00
23813819--23813861	22	1.9	22	85	4	59	37	18	6	37	1.78
23816287--23816344	25	2.4	24	75	18	57	8	39	1	50	1.43
23818838--23818883	23	2.0	23	82	0	56	36	0	4	58	1.18
23837603--23837689	45	1.9	45	92	0	147	34	22	16	26	1.95
23837691--23837885	51	3.9	50	72	7	144	30	26	17	24	1.97
23837991--23838034	22	2.0	22	95	0	79	13	20	0	65	1.26
23843621--23843680	30	2.0	30	96	0	111	25	3	15	56	1.54
23852039--23852072	17	2.0	17	100	0	68	47	11	11	29	1.76
23853434--23853488	19	2.9	19	97	0	101	36	0	5	58	1.21
23853408--23853488	38	2.2	38	82	10	96	38	0	4	56	1.21
23857526--23857590	28	2.2	31	78	13	75	43	0	43	13	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23863420--23864052	316	2.0	316	100	0	1266	41	18	9	30	1.83
23870187--23870309	60	2.0	60	96	0	228	30	21	14	34	1.93
23873133--23873192	18	3.3	18	74	4	57	61	0	0	38	0.96
23880462--23880584	60	2.0	60	96	0	228	30	21	14	34	1.93
23883408--23883467	18	3.3	18	74	4	57	61	0	0	38	0.96
23888816--23889062	133	1.9	133	83	5	329	32	14	20	32	1.93
23895927--23895973	21	2.2	21	84	0	58	40	19	38	2	1.63
23896593--23896708	41	2.8	41	81	1	142	25	24	22	27	2.00
23899161--23899591	221	2.0	219	91	1	693	29	24	14	31	1.95
23899161--23899591	44	9.8	44	83	3	508	29	24	14	31	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163