genome.fa.s4.2.7.7.80.10.50.1000.141.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  141  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46247871--46247913	19	2.2	20	84	12	63	32	18	0	48	1.48
46248042--46248175	38	3.5	39	75	9	105	30	25	19	24	1.98
46248267--46248320	18	3.1	17	81	7	72	35	20	0	44	1.52
46256465--46256508	16	2.8	17	83	13	58	4	18	9	68	1.34
46256824--46256895	33	2.2	32	85	11	94	52	8	0	38	1.32
46260318--46260366	17	2.8	18	78	9	57	59	0	4	36	1.17
46261640--46261697	23	2.3	26	82	8	77	22	24	20	32	1.98
46262265--46262311	24	2.0	24	86	0	67	51	6	8	34	1.58
46262385--46262416	16	1.9	17	93	6	57	75	3	18	3	1.08
46263361--46263412	22	2.4	22	90	6	79	11	26	17	44	1.83
46264840--46264907	11	6.3	10	77	13	64	73	2	22	1	1.05
46264841--46264914	29	2.5	29	73	8	69	71	2	22	2	1.11
46265780--46265918	41	3.5	40	75	8	106	26	18	23	31	1.97
46274072--46274241	8	21.2	8	100	0	340	12	12	12	62	1.54
46280928--46280969	23	1.9	23	90	9	70	35	2	4	57	1.33
46284995--46285319	161	2.0	162	99	0	643	38	24	11	25	1.89
46289405--46289457	18	2.7	20	80	8	56	47	0	7	45	1.31
46297426--46297464	20	2.0	20	90	9	64	25	2	0	71	0.98
46309585--46309646	24	2.6	25	89	5	85	38	20	22	17	1.93
46323655--46323681	3	9.0	3	100	0	54	33	33	0	33	1.58
46329088--46329445	183	1.9	184	98	1	700	58	5	5	31	1.43
46329963--46330019	19	3.1	18	77	7	60	31	3	1	63	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46330034--46330725	9	75.3	9	64	18	81	36	4	2	56	1.33
46330110--46330166	19	3.1	18	77	7	60	31	3	1	63	1.22
46330257--46330313	19	3.1	18	77	7	60	31	3	1	63	1.22
46330404--46330460	19	3.1	18	77	7	60	31	3	1	63	1.22
46330551--46330607	19	3.1	18	77	7	60	31	3	1	63	1.22
46330698--46330754	19	3.1	18	77	7	60	31	3	1	63	1.22
46329959--46330862	147	6.1	147	100	0	1808	36	4	2	56	1.34
46331778--46331802	5	5.0	5	100	0	50	0	0	80	20	0.72
46339254--46339766	255	2.0	255	100	0	1026	33	15	12	37	1.86
46346867--46346933	1	67.0	1	100	0	134	0	0	0	100	0.00
46347429--46347473	24	1.9	23	86	4	63	53	0	0	46	1.00
46347520--46347557	19	2.0	19	85	10	51	52	5	0	42	1.24
46354116--46354324	43	4.9	43	84	5	248	29	22	23	24	1.99
46354102--46354280	84	2.1	86	90	3	281	29	23	24	22	1.99
46354761--46354822	21	3.0	21	87	0	79	4	45	17	32	1.70
46361691--46361749	27	2.3	24	85	8	73	27	0	18	54	1.44
46361821--46361861	13	2.8	15	85	14	59	34	0	19	46	1.50
46361820--46361898	16	5.0	16	75	13	74	34	1	17	46	1.56
46361950--46361996	20	2.3	20	82	10	60	55	2	2	40	1.24
46362599--46362700	50	2.0	51	98	1	197	47	21	11	19	1.81
46363260--46363301	19	2.2	19	100	0	84	9	21	9	59	1.57
46363266--46363307	19	2.2	19	91	0	66	14	21	7	57	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46364112--46364475	163	2.2	165	95	3	646	34	18	12	34	1.88
46365769--46365873	41	2.6	41	82	7	124	34	27	16	21	1.95
46366086--46366192	40	2.7	41	75	15	118	20	24	22	32	1.98
46366079--46366188	39	2.8	38	75	17	109	18	23	22	35	1.96
46374621--46374883	87	3.0	87	85	4	325	23	25	24	26	2.00
46374711--46374844	44	3.0	45	71	15	143	26	26	23	23	2.00
46374617--46374886	88	3.1	88	84	7	327	24	24	24	25	2.00
46378175--46378222	20	2.3	21	82	10	62	10	18	0	70	1.15
46378177--46378217	13	3.1	13	89	3	55	12	17	0	70	1.16
46378177--46378222	7	6.6	7	85	7	58	10	17	0	71	1.13
46378600--46378689	42	2.1	43	85	6	121	8	11	4	75	1.17
46384012--46384045	2	17.5	2	87	6	52	47	0	2	50	1.16
46384073--46384134	31	2.0	31	84	9	81	54	6	14	24	1.63
46384237--46384263	4	6.8	4	100	0	54	77	0	0	22	0.76
46410709--46410848	46	3.0	46	94	0	244	27	27	9	35	1.87
46411038--46411113	38	2.0	38	92	0	125	35	17	15	31	1.91
46411639--46411676	17	2.3	17	90	4	60	44	21	5	28	1.73
46413001--46413070	24	2.8	25	77	14	74	22	21	20	35	1.96
46415041--46415078	20	1.9	20	88	0	58	52	0	10	36	1.36
46415942--46416038	41	2.4	41	89	1	142	39	12	23	24	1.89
46416019--46416098	40	2.0	40	100	0	160	27	17	32	22	1.96
46448328--46448357	6	5.0	6	91	0	51	0	46	3	50	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46450393--46450438	24	2.0	24	86	4	67	43	0	13	43	1.43
46450109--46450820	355	2.0	355	99	0	1415	40	6	9	43	1.63
46450748--46450793	24	2.0	24	86	4	67	43	0	13	43	1.43
46452072--46452107	18	1.9	18	88	5	54	63	0	2	33	1.08
46457819--46457850	16	2.0	16	93	0	55	65	0	21	12	1.25
46468872--46468918	22	2.1	22	100	0	94	40	10	10	38	1.75
46471341--46471376	2	18.0	2	94	0	63	50	2	0	47	1.15
46474504--46474542	19	2.1	19	100	0	78	46	0	25	28	1.53
46475002--46475033	14	2.3	14	94	0	55	40	21	6	31	1.78
46498578--46498607	14	2.1	15	93	6	53	46	0	0	53	1.00
46498549--46498671	60	2.0	61	96	1	230	26	11	13	48	1.75
46498638--46498668	15	2.1	15	93	0	53	41	0	0	58	0.98
46504859--46504909	21	2.4	21	76	0	57	41	23	17	17	1.90
46507583--46507622	20	2.0	20	90	0	62	27	10	12	50	1.72
46507568--46507634	34	1.9	35	90	3	109	32	7	11	47	1.68
46516038--46516141	53	2.0	53	100	0	208	35	5	21	37	1.77
46516213--46516251	18	2.2	18	90	0	60	35	12	7	43	1.72
46537957--46538007	22	2.3	22	83	10	59	0	15	3	80	0.86
46537957--46538007	23	2.2	23	82	6	59	0	15	3	80	0.86
46538302--46538359	11	5.3	11	74	13	57	67	3	1	27	1.17
46538302--46538360	10	5.5	10	76	20	57	66	3	1	28	1.18
46538458--46538507	21	2.4	22	83	10	68	32	0	2	66	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46538472--46538515	21	2.1	21	91	4	72	22	0	6	70	1.11
46543980--46544022	11	3.8	12	81	9	54	74	0	4	20	1.00
46544019--46544058	20	2.0	20	85	0	53	55	7	2	35	1.42
46544437--46544502	9	6.9	9	73	13	60	30	1	3	65	1.17
46544435--46544512	20	4.0	19	71	11	59	32	1	3	62	1.21
46544435--46544519	40	2.2	39	85	6	109	29	2	4	63	1.27
46544951--46545013	10	6.1	10	74	10	56	25	3	3	68	1.19
46555394--46555425	16	2.0	16	93	0	55	25	15	0	59	1.36
46568422--46568479	25	2.4	25	77	8	66	22	25	17	34	1.96
46568632--46568705	24	3.0	25	76	7	64	20	22	22	33	1.97
46571411--46571459	16	3.1	16	75	18	50	38	16	0	44	1.48
46571692--46571911	25	8.9	25	66	13	80	36	21	22	19	1.95
46571716--46571853	73	1.9	73	82	5	172	33	22	23	20	1.97
46571792--46571839	23	2.1	23	84	0	60	29	22	31	16	1.96
46575477--46575509	17	1.9	17	100	0	66	48	0	9	42	1.35
46583601--46583673	20	3.8	19	77	12	60	63	5	2	28	1.31
46583457--46583665	10	21.6	10	65	19	52	58	6	0	34	1.30
46587509--46587588	32	2.5	30	79	15	81	32	11	13	42	1.80
46587588--46587742	42	3.5	43	79	10	143	29	18	23	29	1.97
46596328--46596357	6	5.0	6	100	0	60	33	0	16	50	1.46
46599096--46599128	3	11.0	3	93	0	57	33	0	3	63	1.10
46609579--46609638	6	10.0	6	81	0	66	11	68	1	18	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46611328--46611371	22	2.0	22	100	0	88	31	0	31	36	1.58
46617724--46617755	6	5.3	6	100	0	64	18	46	34	0	1.49
46617715--46617754	18	2.2	18	86	0	53	22	47	27	2	1.64
46617724--46617765	18	2.3	18	87	0	57	21	45	30	2	1.65
46621577--46621636	28	2.1	28	84	6	77	48	0	6	45	1.29
46623320--46623379	30	2.0	31	86	3	86	20	40	0	40	1.52
46624001--46624026	5	5.2	5	100	0	52	23	19	19	38	1.93
46624317--46624348	16	1.9	17	93	6	57	6	6	34	53	1.51
46624522--46624571	12	4.1	12	78	2	55	16	22	2	60	1.46
46624522--46624570	18	2.7	18	87	3	62	16	22	2	59	1.47

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163