genome.fa.s4.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  124  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39904965--39905058	19	4.8	19	88	5	143	36	14	10	38	1.81
39920110--39920170	31	2.0	29	87	6	86	44	9	11	34	1.74
39923261--39923300	20	2.0	20	90	0	62	27	10	12	50	1.72
39923246--39923312	34	1.9	35	90	3	109	31	8	13	46	1.74
39923240--39923316	14	5.0	15	71	20	52	33	9	14	42	1.77
39924303--39924327	7	3.6	7	100	0	50	72	0	16	12	1.13
39925166--39925241	27	2.6	30	80	18	79	44	6	2	46	1.43
39934450--39934530	25	3.2	25	89	5	119	32	18	32	17	1.94
39937618--39937670	11	5.1	10	76	17	54	54	0	1	43	1.11
39937618--39937708	31	3.0	30	82	12	98	60	0	2	37	1.09
39937618--39937699	41	2.0	42	88	7	123	59	0	2	37	1.11
39937655--39937718	32	2.1	30	91	8	103	68	0	1	29	0.99
39937618--39937751	71	1.9	73	88	3	209	60	0	2	36	1.12
39937666--39937751	41	2.1	39	83	10	102	65	0	3	31	1.10
39944944--39945190	43	5.8	42	86	6	329	29	32	17	21	1.96
39946094--39946841	46	16.5	46	77	8	635	39	22	6	31	1.79
39946094--39946844	23	33.0	23	74	8	529	39	23	5	31	1.78
39946237--39946841	137	4.4	137	85	4	857	39	22	5	31	1.78
39950629--39950738	16	6.5	16	79	9	103	47	12	13	26	1.79
39950630--39950847	18	12.4	17	71	20	114	44	11	15	29	1.81
39950809--39950938	36	3.6	35	65	20	88	46	9	13	30	1.74
39951485--39951526	17	2.4	18	92	7	70	0	11	0	88	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39951790--39951853	10	6.0	11	77	18	55	3	18	0	78	0.89
39951791--39951855	12	5.8	11	81	13	71	1	20	0	78	0.83
39952348--39952478	30	4.4	31	79	6	128	37	3	25	34	1.71
39952730--39952760	16	1.9	16	93	0	53	16	12	6	64	1.47
39952869--39953532	74	8.7	75	91	4	969	36	20	15	26	1.93
39952869--39953532	240	2.9	226	90	5	989	36	20	15	26	1.93
39954405--39954451	14	3.4	13	83	16	51	0	6	6	87	0.68
39954406--39954452	18	2.5	18	86	6	58	0	6	6	87	0.68
39960611--39960640	15	1.9	16	93	6	53	70	0	16	13	1.18
39961903--39961937	18	1.9	18	88	0	52	45	8	8	37	1.65
39961972--39962206	17	13.4	16	73	16	103	45	11	13	29	1.79
39961954--39962279	18	18.3	18	70	11	174	45	11	13	30	1.78
39962147--39962282	72	1.9	72	89	0	209	44	8	13	33	1.74
39962461--39962499	20	2.0	20	94	0	69	38	10	12	38	1.78
39962822--39962856	15	2.2	16	90	5	54	2	11	0	85	0.69
39963118--39963184	9	6.9	10	81	13	70	1	19	0	79	0.82
39963137--39963184	13	3.8	13	78	15	55	0	20	0	79	0.74
39963118--39963180	16	4.1	16	78	19	71	1	17	0	80	0.78
39963257--39963315	9	6.6	9	73	13	50	0	33	0	66	0.92
39963257--39963315	14	4.4	13	77	14	57	0	33	0	66	0.92
39963261--39963322	21	2.9	21	87	4	88	0	30	0	69	0.89
39963279--39963320	12	3.8	12	75	18	54	0	26	0	73	0.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39963257--39963321	16	4.0	16	75	16	53	0	32	0	67	0.91
39965553--39965683	30	4.4	31	77	6	119	36	3	25	34	1.74
39965863--39966204	41	8.3	41	94	0	594	30	30	20	17	1.96
39966236--39966373	40	3.5	40	81	5	163	16	22	24	36	1.94
39975897--39975922	2	13.0	2	100	0	52	50	0	0	50	1.00
39977208--39977235	2	14.0	2	100	0	56	50	0	0	50	1.00
39981049--39981100	7	7.4	7	79	12	54	40	0	0	59	0.97
39981043--39981099	27	2.0	27	86	13	78	40	0	0	59	0.97
40001140--40001176	19	2.0	19	89	5	58	64	0	5	29	1.15
40001144--40001188	19	2.3	20	81	11	58	71	0	4	24	1.05
40001516--40001562	22	2.1	22	96	0	85	31	12	12	42	1.81
40001887--40001942	9	6.0	9	76	15	51	28	3	1	66	1.19
40001887--40002201	10	32.0	10	65	20	60	29	4	4	61	1.34
40001892--40001943	19	2.7	19	77	16	54	25	3	1	69	1.16
40001893--40002302	129	3.2	129	99	0	811	30	4	4	60	1.36
40002002--40002072	19	3.7	20	75	16	60	25	2	5	66	1.27
40002131--40002201	19	3.7	20	75	16	60	25	2	5	66	1.27
40002252--40002332	29	2.8	29	76	10	69	35	0	4	59	1.19
40003175--40003537	41	8.9	41	90	3	554	15	17	28	38	1.91
40020083--40020250	43	3.7	43	78	14	176	25	22	23	29	1.99
40020100--40020203	52	2.0	52	96	0	190	23	18	24	34	1.96
40026739--40026796	31	1.9	30	86	10	82	41	8	13	36	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40029068--40029133	27	2.5	26	80	9	62	37	1	6	54	1.34
40029098--40029143	19	2.3	21	78	17	53	32	2	6	58	1.36
40029093--40029129	18	2.1	19	90	10	60	35	2	5	56	1.36
40039229--40039284	22	2.5	23	82	11	71	66	3	7	23	1.33
40040166--40040201	16	2.2	16	90	0	54	22	2	0	75	0.94
40056034--40056059	13	2.0	13	100	0	52	0	92	7	0	0.39
40058075--40058100	13	2.0	13	100	0	52	38	30	15	15	1.88
40059911--40059962	15	3.5	15	82	10	70	25	1	0	73	0.94
40059919--40059963	21	2.1	21	87	0	63	22	2	0	75	0.91
40060761--40060801	21	2.0	20	90	4	64	75	4	0	19	0.98
40062373--40062432	29	2.1	29	87	3	86	30	10	11	48	1.72
40064241--40064266	7	3.7	7	100	0	52	42	11	30	15	1.82
40068712--40068976	132	2.0	133	99	0	523	33	15	25	24	1.95
40073952--40073976	2	12.5	2	100	0	50	52	0	0	48	1.00
40076843--40076872	4	7.5	4	92	0	51	26	3	0	70	1.03
40076843--40076887	16	2.9	15	90	6	63	26	6	0	66	1.16
40078715--40078763	25	2.1	24	85	11	66	46	6	8	38	1.58
40084816--40085248	216	2.0	217	99	0	859	48	7	6	37	1.57
40089180--40089614	231	1.9	225	87	2	636	29	31	8	31	1.87
40090566--40090644	32	2.5	30	82	10	86	51	6	3	37	1.45
40096642--40096670	6	5.0	6	91	8	51	82	0	0	17	0.66
40096642--40096670	11	2.5	12	94	5	51	82	0	0	17	0.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40104918--40104993	23	3.4	23	82	7	86	17	21	23	38	1.93
40114392--40114552	25	6.4	25	72	12	91	34	20	25	19	1.96
40114488--40114557	26	2.7	26	82	4	88	40	21	22	15	1.91
40116277--40116356	2	41.5	2	72	12	51	45	2	7	45	1.45
40116781--40116930	41	3.6	41	88	2	203	28	20	28	23	1.99
40119285--40119407	57	2.1	57	81	1	156	43	8	20	27	1.80
40126711--40126745	18	1.9	18	94	0	61	54	0	20	25	1.45
40127305--40127340	15	2.3	17	86	13	51	61	2	5	30	1.33
40133801--40133840	4	10.0	4	89	10	64	2	22	0	75	0.93
40140229--40140276	10	4.9	10	80	12	55	47	12	0	39	1.41
40140227--40140272	20	2.2	21	92	7	85	47	15	0	36	1.45
40150542--40150583	19	2.1	20	79	20	52	50	0	0	50	1.00
40150547--40150614	30	2.3	29	82	12	77	44	1	1	52	1.19
40167723--40167793	35	2.0	35	100	0	142	35	14	16	33	1.89
40174957--40175018	31	2.0	31	100	0	124	38	16	12	32	1.86
40178411--40178653	133	1.8	133	90	1	389	30	19	19	30	1.97
40180911--40180961	24	2.1	25	82	10	61	37	3	3	54	1.37
40181402--40181443	22	1.9	22	85	0	57	47	19	7	26	1.74
40193566--40193590	2	12.5	2	100	0	50	52	0	0	48	1.00
40204105--40204169	21	3.0	22	74	19	64	44	9	0	46	1.35
40206078--40206102	13	1.9	13	100	0	50	48	20	16	16	1.82
40206178--40206255	36	2.1	37	81	9	88	41	0	1	57	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40206209--40206234	11	2.4	11	100	0	52	38	0	0	61	0.96
40206217--40206274	26	2.2	26	84	0	71	31	0	3	65	1.09
40206553--40206640	31	2.9	29	79	14	88	37	3	12	46	1.59
40207269--40207327	31	1.9	31	86	6	84	37	8	3	50	1.49
40209618--40209717	22	4.2	24	81	7	100	16	23	20	41	1.90
40209629--40209719	22	4.0	22	83	9	103	16	24	19	39	1.92
40213170--40213202	15	2.2	15	94	0	57	18	3	48	30	1.63
40222535--40223056	198	2.7	190	84	7	649	27	16	16	39	1.90
40232174--40232220	2	23.5	2	100	0	94	51	0	0	48	1.00
40232846--40232902	20	2.8	20	74	12	53	33	1	0	64	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163