genome.fa.s4.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  161  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54308876--54308924	11	4.4	11	92	2	71	44	2	32	20	1.63
54308868--54308924	22	2.5	23	82	5	80	45	1	29	22	1.63
54309274--54309323	24	2.1	24	85	14	68	38	0	0	62	0.96
54313870--54314031	43	3.8	42	76	6	137	29	25	16	29	1.96
54319072--54319118	18	2.7	18	81	15	55	36	0	0	63	0.94
54320172--54320201	12	2.6	11	90	10	51	43	3	0	53	1.17
54325829--54325955	62	2.0	63	95	1	229	51	15	22	10	1.73
54329515--54329553	20	1.9	20	89	5	60	12	2	2	82	0.89
54330290--54330955	236	2.8	231	83	5	765	22	16	19	40	1.91
54347522--54347560	20	2.0	20	94	0	69	25	12	30	30	1.93
54351580--54352009	214	2.0	215	99	0	844	40	10	13	35	1.79
54352952--54353609	329	2.0	329	99	0	1300	32	11	15	40	1.83
54354408--54354462	28	1.9	29	85	3	76	52	0	1	45	1.11
54354604--54354641	20	1.9	20	84	10	51	50	2	0	47	1.15
54357466--54357523	26	2.2	27	93	3	100	53	10	24	12	1.68
54362051--54362218	82	2.0	83	98	1	329	26	4	17	51	1.64
54365275--54365300	12	2.2	12	100	0	52	61	0	7	30	1.24
54368323--54368530	113	1.8	113	89	4	330	23	27	25	22	2.00
54369132--54369238	54	2.0	53	96	1	196	47	14	14	23	1.81
54372564--54372640	14	5.0	15	70	20	52	33	6	14	45	1.70
54375302--54375346	16	2.8	17	80	10	58	28	2	6	62	1.33
54393388--54393675	98	2.9	99	80	7	325	32	21	22	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54393388--54393702	50	6.4	49	80	7	334	32	20	23	23	1.98
54393388--54393713	148	2.2	148	82	8	387	32	20	23	23	1.98
54396089--54396228	51	2.9	46	73	17	133	29	20	25	24	1.99
54396089--54396251	51	3.4	47	75	12	127	28	21	26	23	1.99
54399099--54399178	26	3.0	26	66	10	72	58	1	11	28	1.40
54399081--54399178	53	1.9	50	84	10	128	59	1	12	27	1.40
54399268--54399360	11	8.8	10	75	15	89	61	0	20	18	1.35
54399290--54399350	16	3.8	16	84	2	77	63	0	16	19	1.30
54399268--54399360	5	17.6	5	80	12	89	61	0	20	18	1.35
54399588--54399623	13	2.7	14	87	12	58	63	0	5	30	1.17
54399707--54399765	21	2.7	21	76	5	64	59	1	8	30	1.37
54399917--54400025	33	3.3	33	84	0	128	23	46	15	13	1.82
54402945--54403146	48	4.2	48	84	8	239	22	21	19	36	1.95
54402946--54403147	97	2.1	97	84	5	257	22	21	19	37	1.95
54410638--54410695	25	2.3	25	87	0	89	18	20	18	41	1.91
54416744--54416830	40	2.2	40	84	10	108	43	1	3	51	1.26
54417280--54417308	15	2.0	15	93	6	51	34	0	0	65	0.93
54419057--54419107	24	2.1	24	82	7	59	31	1	5	60	1.31
54429913--54430360	237	1.9	238	92	3	760	32	22	12	32	1.91
54432051--54432115	30	2.2	29	83	5	85	64	6	15	13	1.47
54439974--54440223	130	1.9	132	84	4	337	41	12	2	43	1.56
54442127--54442421	152	1.9	152	100	0	590	46	9	6	37	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54454698--54454723	13	2.0	13	100	0	52	15	38	0	46	1.46
54465840--54465906	34	1.9	35	90	3	109	31	8	13	46	1.74
54465855--54465894	20	2.0	20	90	0	62	27	10	12	50	1.72
54465834--54465910	14	5.0	15	71	20	52	33	9	14	42	1.77
54476399--54476436	16	2.3	17	82	17	53	63	5	0	31	1.17
54477496--54477551	26	2.2	26	81	12	62	42	1	1	53	1.21
54483112--54483139	3	9.3	3	100	0	56	64	0	0	35	0.94
54483351--54483389	20	1.9	20	84	5	51	20	7	15	56	1.63
54484424--54484481	29	1.9	30	89	6	91	29	5	12	53	1.59
54490533--54490674	75	1.9	75	95	1	259	43	11	22	22	1.85
54490828--54491252	218	1.9	218	92	0	715	43	17	15	24	1.87
54491202--54491265	32	2.0	32	87	6	94	56	20	15	7	1.64
54493706--54493772	34	1.9	35	93	3	118	32	7	13	46	1.71
54497396--54497449	24	2.3	23	81	9	63	18	38	24	18	1.93
54512246--54512277	15	2.1	15	94	0	55	40	9	15	34	1.80
54512509--54512672	81	2.0	82	98	1	321	54	3	12	29	1.54
54513745--54513807	22	2.9	22	80	4	74	17	23	17	41	1.90
54513753--54513810	22	2.6	23	86	8	84	13	24	18	43	1.87
54531782--54531873	47	2.0	47	93	0	157	23	13	17	45	1.83
54532275--54532301	8	3.4	8	100	0	54	88	0	11	0	0.50
54539522--54539601	41	1.9	42	92	7	137	50	10	7	32	1.64
54539757--54539794	20	1.9	20	100	0	76	47	0	2	50	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54541180--54541206	9	3.0	9	100	0	54	55	11	11	22	1.66
54541412--54541438	9	3.0	9	100	0	54	22	11	11	55	1.66
54549028--54549059	15	2.2	15	94	5	57	31	3	0	65	1.08
54556511--54556553	18	2.3	19	85	14	63	25	0	4	69	1.07
54565407--54565808	156	2.6	154	77	9	406	45	8	8	37	1.65
54568710--54568734	4	6.2	4	100	0	50	28	0	0	72	0.86
54585055--54585097	22	2.0	22	90	9	70	58	0	2	39	1.11
54592595--54593212	152	4.1	149	87	5	827	29	10	8	51	1.66
54593036--54593376	187	1.8	187	90	2	551	31	10	7	50	1.65
54592916--54593545	340	1.9	334	82	6	806	31	10	7	50	1.64
54593250--54593594	153	2.3	155	80	8	411	33	10	4	51	1.57
54593797--54593836	22	1.9	21	85	10	55	17	0	7	75	1.03
54595577--54596324	178	4.3	168	87	5	802	39	22	11	26	1.89
54595678--54596380	178	4.0	178	90	4	1018	38	22	12	25	1.90
54600107--54600131	3	8.3	3	100	0	50	68	0	32	0	0.90
54608051--54608079	14	2.1	14	93	6	51	58	0	0	41	0.98
54608877--54608933	11	5.2	11	76	0	60	19	5	8	66	1.38
54608868--54608932	22	3.0	22	72	2	60	18	6	9	66	1.41
54611543--54611614	31	2.3	32	78	9	85	41	11	9	37	1.74
54623875--54624034	39	4.1	39	100	0	320	22	20	23	33	1.97
54631310--54631346	16	2.2	18	85	9	51	48	2	2	45	1.30
54646609--54646651	23	1.9	22	81	13	52	58	2	4	34	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54648023--54648064	20	2.1	21	86	8	61	50	4	2	42	1.36
54661131--54661159	7	4.1	7	100	0	58	13	44	13	27	1.82
54663702--54663760	29	2.0	29	86	3	82	28	6	11	52	1.63
54663707--54663769	29	2.1	29	82	8	74	31	9	9	49	1.68
54667856--54667886	15	2.1	15	93	0	53	6	38	32	22	1.80
54670984--54671008	7	3.6	7	100	0	50	88	0	12	0	0.53
54673093--54673133	21	2.0	20	85	4	55	39	0	0	60	0.96
54675405--54675437	2	16.5	2	93	0	57	45	0	3	51	1.16
54677240--54677285	21	2.4	19	80	19	60	67	0	15	17	1.24
54677245--54677295	21	2.4	21	90	3	84	68	0	13	17	1.21
54686258--54686315	20	2.8	21	84	10	66	39	1	3	55	1.27
54686420--54686460	20	2.0	20	90	0	64	34	2	0	63	1.08
54692085--54692147	31	2.0	30	85	11	83	36	1	1	60	1.16
54698502--54698528	14	1.9	14	100	0	54	14	18	7	59	1.58
54700057--54700081	2	12.5	2	100	0	50	48	0	0	52	1.00
54703313--54703388	23	3.3	22	87	3	107	30	23	22	23	1.99
54703614--54703652	18	2.2	17	86	13	53	46	20	0	33	1.51
54707144--54707468	90	3.6	88	82	7	397	24	5	12	57	1.57
54707532--54707584	21	2.6	21	77	19	58	60	3	3	32	1.32
54708237--54708275	20	2.0	20	89	0	60	20	17	2	58	1.50
54708413--54708449	16	2.3	16	95	0	65	37	5	32	24	1.78
54708429--54708518	44	2.0	44	91	2	144	27	4	30	37	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54708429--54708535	45	2.5	43	83	10	132	29	3	30	35	1.75
54712549--54712599	17	3.0	17	88	0	75	33	15	13	37	1.87
54715616--54715655	21	1.9	21	84	0	53	30	22	5	42	1.75
54717376--54717419	21	2.1	20	83	8	52	47	4	4	43	1.44
54717956--54717999	22	2.2	20	84	12	54	54	0	0	45	0.99
54721280--54721306	14	1.9	14	100	0	54	33	22	7	37	1.82
54721285--54721328	22	2.0	22	95	0	79	29	18	11	40	1.85
54722346--54722376	2	15.5	2	100	0	62	48	0	0	51	1.00
54730492--54730516	6	4.2	6	100	0	50	16	52	0	32	1.44
54747865--54747906	20	2.1	20	82	8	50	33	0	0	66	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163