genome.fa.s4.2.7.7.80.10.50.1000.35.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  35  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11492426--11492516	46	2.0	46	88	0	137	27	21	20	29	1.98
11495091--11495144	24	2.2	25	83	9	67	51	1	5	40	1.36
11495833--11495921	30	3.1	30	80	6	96	47	3	3	46	1.36
11495906--11495954	19	2.6	18	81	15	55	40	0	2	57	1.10
11496990--11497018	12	2.3	13	94	5	51	13	0	0	86	0.58
11498013--11498207	98	2.0	98	95	0	354	27	10	25	36	1.89
11500374--11500402	2	15.0	2	92	7	51	48	0	0	51	1.00
11507504--11507573	3	23.3	3	91	0	95	34	7	0	58	1.25
11509524--11509563	16	2.4	16	91	8	62	32	0	20	47	1.50
11510670--11510860	63	3.0	63	100	0	382	36	12	18	31	1.89
11513226--11513309	28	3.0	28	92	0	132	19	14	8	58	1.61
11513233--11513320	28	3.1	28	86	0	77	21	11	7	59	1.57
11515372--11515596	67	3.2	68	67	25	198	59	5	5	29	1.43
11515312--11515599	144	2.0	144	97	0	549	58	5	5	29	1.44
11515583--11515608	11	2.4	11	100	0	52	76	0	0	23	0.78
11517354--11517397	23	1.9	23	90	0	70	4	20	4	70	1.23
11517942--11518080	62	2.2	62	78	6	147	25	21	28	25	1.99
11525455--11525811	127	2.8	127	84	5	413	36	9	16	38	1.80
11533507--11533555	23	2.1	23	100	0	98	22	4	16	57	1.56
11534139--11534266	33	3.6	33	73	17	121	18	21	25	34	1.96
11534138--11534310	75	2.3	75	90	0	274	20	19	26	33	1.96
11534213--11534412	102	2.0	102	90	0	319	21	19	27	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11534107--11534444	177	1.9	177	91	1	552	21	19	26	32	1.97
11541620--11541656	9	4.1	9	89	0	56	32	10	10	45	1.74
11541891--11541920	15	2.1	15	93	6	53	83	6	0	10	0.81
11542019--11542069	19	2.7	20	73	14	54	62	0	3	33	1.13
11545827--11545892	28	2.3	27	82	12	71	46	3	0	50	1.16
11545831--11545870	21	2.0	20	85	5	53	45	0	0	55	0.99
11547436--11547554	27	4.4	27	97	0	220	13	35	33	17	1.89
11547626--11547662	10	3.6	10	88	3	56	70	0	29	0	0.88
11547916--11547962	16	2.7	17	84	12	60	25	0	12	61	1.31
11547974--11547999	9	2.9	9	100	0	52	42	0	0	57	0.98
11553150--11553818	284	2.3	287	93	1	1139	30	11	7	50	1.67
11553754--11553788	14	2.4	15	85	9	54	11	17	5	65	1.43
11554255--11554293	14	2.7	14	88	4	60	0	28	0	71	0.86
11554223--11554292	18	3.6	19	76	16	63	0	30	0	70	0.88
11554412--11554438	14	1.9	14	100	0	54	11	0	0	88	0.50
11568517--11568543	6	4.5	6	100	0	54	51	0	0	48	1.00
11572242--11572336	3	31.7	3	85	0	91	57	1	7	33	1.33
11574042--11574100	24	2.3	26	82	5	68	8	11	3	76	1.13
11575243--11575301	24	2.3	26	82	5	68	8	11	3	76	1.13
11577466--11577509	18	2.4	18	92	0	70	22	22	11	43	1.85
11577886--11578065	59	3.1	58	89	6	281	34	4	8	52	1.53
11578335--11578414	38	2.1	38	97	0	151	37	20	18	23	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11579071--11579107	16	2.3	16	95	0	65	43	18	13	24	1.86
11581547--11581634	29	3.0	28	80	5	95	34	20	6	38	1.79
11581546--11581625	29	2.8	29	80	0	106	32	18	6	42	1.75
11585872--11585900	14	2.0	15	93	6	51	51	13	0	34	1.42
11597177--11597335	39	4.1	39	83	0	192	16	16	30	35	1.92
11600446--11600512	34	1.9	35	84	3	91	31	8	11	47	1.71
11600493--11600577	32	2.6	31	76	9	89	25	10	18	44	1.82
11600608--11600640	10	3.3	10	95	0	57	48	0	0	51	1.00
11600599--11600626	14	2.0	14	100	0	56	42	0	0	57	0.99
11603197--11603248	25	2.1	25	92	7	88	38	9	26	25	1.86
11607482--11607532	9	5.4	9	86	9	75	23	9	27	39	1.86
11607482--11607532	20	2.7	18	85	11	75	23	9	27	39	1.86
11608748--11608780	17	1.9	18	88	11	52	42	12	0	45	1.41
11609007--11609109	51	2.0	52	88	1	154	17	7	10	64	1.48
11610648--11610677	15	1.9	16	93	6	53	0	23	10	66	1.21
11621807--11621848	3	14.3	3	90	5	68	28	0	2	69	1.01
11625499--11625616	62	2.0	56	88	9	173	34	17	23	23	1.96
11625678--11626144	104	4.4	104	87	4	670	27	18	15	38	1.91
11625678--11626144	209	2.2	213	88	3	714	27	18	15	38	1.91
11625695--11626147	105	4.3	104	88	3	527	27	17	15	39	1.90
11626086--11626197	59	1.9	59	90	3	183	16	23	18	41	1.89
11627207--11627278	19	3.7	19	81	7	90	36	9	16	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11631562--11631610	25	2.0	25	84	8	64	22	14	10	53	1.71
11633763--11634418	88	7.5	88	90	1	960	25	23	26	25	2.00
11633763--11634418	351	1.9	352	87	2	987	25	23	26	25	2.00
11634445--11634901	44	10.4	44	92	1	666	29	14	23	32	1.93
11635274--11635329	21	2.8	19	87	10	85	33	10	19	35	1.87
11644267--11644318	22	2.3	23	78	18	65	50	0	30	19	1.48
11644275--11644323	22	2.3	22	86	10	66	48	0	32	18	1.48
11645318--11645385	28	2.4	27	82	9	82	26	5	4	63	1.36
11646915--11646951	9	4.1	9	89	0	56	48	13	8	29	1.71
11647303--11647348	18	2.6	17	80	19	51	21	32	0	45	1.52
11654815--11654876	29	2.1	31	84	6	83	29	14	19	37	1.91
11654543--11655254	356	2.0	356	100	0	1424	35	12	10	41	1.77
11655171--11655232	29	2.1	31	84	6	83	29	14	19	37	1.91
11661574--11661650	25	3.2	25	68	20	72	31	15	1	51	1.51
11661562--11661660	48	2.1	48	94	0	171	29	15	3	52	1.57
11662911--11662947	15	2.5	15	100	0	74	13	24	5	56	1.58
11668460--11668632	82	2.0	88	90	8	277	41	8	8	41	1.67
11671000--11671412	30	13.9	30	70	14	171	26	31	23	17	1.97
11671000--11671169	90	1.9	90	82	9	213	28	31	23	17	1.97
11671060--11671374	90	3.5	89	74	8	253	26	30	24	18	1.97
11671360--11671411	27	1.9	27	84	7	70	34	30	21	13	1.92
11684456--11684521	32	2.0	33	82	11	82	34	9	3	53	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11689094--11689188	41	2.3	41	85	1	129	38	9	24	27	1.86
11690698--11690791	37	2.4	38	87	5	127	37	9	26	26	1.87
11690884--11690974	45	2.0	46	97	2	175	37	6	18	37	1.77
11691969--11692186	108	2.0	107	96	0	400	32	5	20	41	1.75
11696334--11698294	88	22.3	88	89	0	2753	30	18	23	27	1.98
11697849--11698229	44	8.7	43	64	8	167	30	17	24	27	1.97
11700489--11700630	73	2.0	72	88	2	214	29	21	16	32	1.95
11701548--11701712	26	6.6	26	71	10	112	39	20	20	20	1.93
11704109--11704477	182	2.0	182	90	1	578	39	13	11	35	1.81
11715889--11715995	26	4.1	26	81	1	142	28	19	17	34	1.95
11721712--11721753	22	2.0	22	90	4	68	38	4	14	42	1.66
11739007--11739076	36	2.0	33	86	8	95	60	2	2	34	1.26
11742597--11743732	114	9.9	114	98	0	2130	40	14	3	41	1.63
11744714--11744738	13	1.9	13	100	0	50	68	24	0	8	1.16
11747231--11747348	24	4.9	24	73	1	101	41	19	21	17	1.90
11747206--11747373	72	2.3	72	86	4	223	41	19	23	15	1.89
11758100--11758135	6	6.0	6	86	0	54	19	0	2	77	0.88
11762454--11762493	3	13.3	3	100	0	80	32	0	0	67	0.91
11768734--11768764	13	2.3	14	94	5	55	35	0	12	51	1.40
11769458--11769500	22	2.0	22	90	0	68	30	9	4	55	1.52
11770698--11770735	20	1.9	20	88	0	58	31	7	2	57	1.41
11771543--11771567	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11773088--11773119	2	16.0	2	100	0	64	50	0	0	50	1.00
11778193--11778258	23	2.8	23	83	4	87	71	6	0	22	1.08
11778556--11778585	14	2.1	14	93	0	51	50	0	0	50	1.00
11778964--11779023	29	2.0	30	84	9	79	45	18	15	21	1.86
11779879--11779928	21	2.5	20	73	17	50	46	4	0	50	1.20
11779956--11779985	14	2.1	15	93	6	53	63	3	6	26	1.35
11780162--11780216	19	2.8	19	83	2	65	49	9	1	40	1.45
11782774--11782899	44	2.9	44	78	7	130	30	25	15	28	1.96
11782869--11783030	40	3.8	40	70	16	117	33	17	17	31	1.94
11782873--11783123	91	2.7	91	85	3	313	31	17	17	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163