genome.fa.s4.2.7.7.80.10.50.1000.143.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  143  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47028157--47028209	21	2.5	20	80	17	54	41	0	0	58	0.98
47033976--47034047	30	2.4	29	77	6	72	41	1	6	50	1.38
47039781--47039821	20	2.0	20	86	9	57	36	2	0	60	1.10
47040750--47040777	2	14.0	2	100	0	56	50	0	0	50	1.00
47049376--47049453	39	2.0	38	95	2	138	35	19	19	25	1.95
47050290--47050898	304	2.0	305	99	0	1202	43	11	7	37	1.69
47063083--47063265	91	2.0	90	93	4	314	37	13	9	39	1.77
47063473--47063509	19	1.9	19	88	0	56	64	0	0	35	0.94
47067742--47067781	8	5.4	8	77	17	50	12	0	35	52	1.39
47067722--47067760	20	2.0	20	90	10	62	12	2	33	51	1.54
47067731--47067764	12	2.8	12	95	0	59	11	0	38	50	1.39
47068015--47068051	16	2.4	15	86	8	56	13	0	29	56	1.37
47068028--47068060	12	2.8	12	90	0	57	15	0	27	57	1.38
47073330--47073398	25	2.6	28	82	17	101	31	13	13	42	1.82
47073341--47073398	25	2.3	26	94	5	102	34	12	13	39	1.82
47077228--47077254	3	9.0	3	100	0	54	66	0	33	0	0.92
47078299--47078338	18	2.1	20	86	9	57	60	0	5	35	1.19
47081166--47081190	6	4.2	6	100	0	50	16	0	0	84	0.63
47084485--47084515	16	1.9	16	93	0	53	19	16	22	41	1.89
47085729--47085759	2	15.5	2	100	0	62	48	0	0	51	1.00
47092665--47092690	13	2.0	13	100	0	52	38	15	15	30	1.88
47100407--47100449	21	2.1	20	82	4	50	13	13	6	65	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47102315--47102353	2	19.5	2	94	0	69	51	2	0	46	1.14
47108572--47108652	40	2.0	40	100	0	162	24	17	24	33	1.96
47110401--47110459	31	1.9	31	89	0	91	40	3	15	40	1.64
47112416--47112440	6	4.2	6	100	0	50	64	0	0	36	0.94
47114871--47114898	4	7.0	4	100	0	56	25	0	0	75	0.81
47117473--47117521	24	2.1	24	84	3	64	18	26	10	44	1.81
47126062--47126963	115	7.9	115	82	3	1081	25	21	25	27	1.99
47126062--47126963	229	3.9	230	87	2	1219	25	21	25	27	1.99
47127060--47127086	14	1.9	14	100	0	54	25	0	37	37	1.57
47127109--47127157	14	3.4	15	80	8	57	20	2	46	30	1.62
47127345--47127393	14	3.4	14	85	2	62	22	2	38	36	1.66
47127412--47127460	7	6.9	7	76	4	53	20	2	46	30	1.62
47127408--47127475	15	4.7	15	80	10	63	22	1	44	32	1.62
47127036--47127642	303	2.0	299	82	8	721	29	2	26	41	1.69
47127720--47127929	115	1.8	114	89	3	332	46	14	15	23	1.83
47127720--47127943	114	2.0	114	87	3	326	48	13	14	23	1.80
47128283--47128547	105	2.5	108	87	3	392	43	13	14	28	1.84
47128512--47128721	115	1.8	114	89	3	332	46	14	15	23	1.83
47128512--47128735	114	2.0	114	87	3	326	48	13	14	23	1.80
47137824--47138033	115	1.8	114	89	3	332	46	14	15	23	1.83
47137824--47138047	114	2.0	114	87	3	326	48	13	14	23	1.80
47138125--47138286	89	1.8	88	94	1	288	46	11	12	29	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47138382--47138646	105	2.5	108	87	3	392	43	13	14	28	1.84
47139358--47139407	22	2.3	22	96	0	91	22	16	16	46	1.84
47141101--47141161	30	2.0	30	84	6	79	45	6	0	47	1.28
47141110--47141154	23	2.0	22	86	4	63	46	6	0	46	1.29
47141116--47141198	42	2.0	42	83	9	107	44	3	0	51	1.18
47141170--47141213	20	2.3	19	84	4	52	47	2	0	50	1.13
47141215--47141576	9	41.7	9	64	19	94	44	20	2	33	1.64
47141222--47141260	20	2.0	19	95	5	69	53	15	0	30	1.42
47141234--47141337	25	4.2	25	81	1	111	46	20	2	30	1.65
47141457--47141543	34	2.6	34	83	3	113	44	21	2	31	1.65
47141482--47141578	25	3.9	24	73	16	90	45	20	0	34	1.52
47141496--47141572	16	4.7	16	75	12	75	48	20	0	31	1.50
47143577--47143730	43	3.6	43	75	4	141	26	18	25	29	1.98
47165608--47165648	20	2.0	20	90	0	64	63	21	2	12	1.40
47169160--47169244	39	2.3	36	81	6	98	25	16	14	43	1.85
47170187--47170508	159	2.0	159	98	0	626	28	14	21	35	1.92
47172217--47172241	2	12.5	2	100	0	50	48	0	0	52	1.00
47172260--47172287	6	4.7	6	100	0	56	17	0	64	17	1.30
47176241--47176280	18	2.2	18	86	8	55	55	0	0	45	0.99
47178787--47178860	29	2.5	30	86	4	96	18	14	14	51	1.77
47179825--47179860	16	2.1	18	90	10	58	41	0	0	58	0.98
47179979--47180052	29	2.5	29	84	8	78	48	12	13	25	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47199643--47199720	31	2.5	31	79	2	95	44	12	6	35	1.68
47201761--47201808	24	2.0	23	84	4	60	41	0	2	56	1.11
47206219--47206244	4	6.5	4	100	0	52	76	0	0	23	0.78
47211517--47211560	16	2.8	16	100	0	88	22	20	25	31	1.98
47211668--47211693	2	13.0	2	100	0	52	50	0	0	50	1.00
47211994--47212028	18	1.9	18	88	11	54	45	0	2	51	1.16
47211997--47212037	21	1.9	22	90	5	66	43	0	2	53	1.13
47212555--47213469	457	2.0	457	98	0	1776	30	10	18	41	1.84
47214707--47214743	9	4.1	9	92	0	65	45	13	10	29	1.77
47214793--47214850	30	2.0	30	86	3	82	20	43	0	36	1.52
47214957--47215016	30	2.0	31	86	3	86	20	40	0	40	1.52
47215581--47215606	5	5.2	5	100	0	52	19	19	19	42	1.90
47218634--47218665	3	10.3	3	93	6	55	68	0	0	31	0.90
47218637--47218663	13	2.1	13	100	0	54	70	0	0	29	0.88
47218634--47218665	16	2.0	16	100	0	64	68	0	0	31	0.90
47228847--47228873	14	1.9	14	100	0	54	29	0	0	70	0.88
47232542--47232681	46	3.0	46	94	0	244	35	7	27	30	1.85
47232544--47232618	24	3.2	24	63	21	59	34	5	29	30	1.80
47233950--47235761	906	2.0	906	100	0	3624	33	10	19	37	1.85
47235935--47236032	26	3.8	26	78	12	114	17	25	25	31	1.97
47251574--47251708	71	1.9	71	84	3	182	32	21	15	30	1.94
47254450--47254507	3	19.3	3	100	0	116	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47255269--47255305	18	2.0	20	84	10	51	40	2	5	51	1.39
47256099--47256123	7	3.6	7	100	0	50	24	0	0	76	0.80
47259742--47259788	24	1.9	25	86	4	69	25	23	2	48	1.62
47259811--47259839	14	2.1	14	100	0	58	37	27	0	34	1.57
47260706--47260773	5	13.4	5	77	20	61	55	0	0	44	0.99
47260705--47260778	31	2.4	29	78	10	76	55	1	0	43	1.08
47276064--47276091	6	4.7	6	100	0	56	17	28	0	53	1.44
47290310--47290807	83	6.0	83	99	0	960	31	19	17	31	1.95
47315301--47315326	12	2.2	12	100	0	52	11	26	7	53	1.63
47315338--47315625	125	2.3	125	90	1	443	29	20	18	31	1.96
47316112--47316160	17	2.8	18	75	6	55	57	6	2	34	1.35
47316600--47316654	24	2.3	24	84	6	67	34	0	1	63	1.05
47316597--47316653	12	4.7	12	75	12	53	35	0	1	63	1.05
47316676--47316975	152	2.0	152	100	0	600	31	14	18	35	1.90
47317239--47317282	17	2.6	17	75	13	54	68	4	4	22	1.27
47317416--47317459	22	2.0	23	86	4	63	61	0	9	29	1.27
47317431--47317564	24	5.5	24	72	19	107	58	6	5	29	1.46
47317548--47317605	24	2.4	24	75	16	57	56	3	5	34	1.38
47318438--47318498	19	3.1	19	76	11	61	4	16	4	73	1.18
47318708--47318751	22	2.0	22	100	0	88	18	4	31	45	1.69
47319209--47319239	7	4.4	7	100	0	62	83	0	0	16	0.64
47319332--47319362	7	4.4	7	91	0	53	87	0	0	12	0.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47319121--47319376	123	2.1	125	96	1	480	53	8	6	31	1.57
47320672--47320704	8	4.0	8	96	4	57	24	0	0	75	0.80
47323819--47323858	16	2.5	16	87	0	62	35	7	30	27	1.84
47325428--47325471	22	2.0	23	86	4	63	61	0	9	29	1.27
47325443--47325576	24	5.5	24	72	19	107	58	6	5	29	1.46
47325560--47325617	24	2.4	24	75	16	57	56	3	5	34	1.38
47326301--47326562	131	2.0	131	100	0	524	31	20	10	37	1.87
47326581--47326641	19	3.1	19	76	11	61	4	16	4	73	1.18
47326851--47326894	22	2.0	22	100	0	88	18	4	31	45	1.69
47327352--47327382	7	4.4	7	100	0	62	83	0	0	16	0.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163