genome.fa.s4.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  77  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25075369--25075640	51	5.4	51	79	4	262	27	24	18	29	1.98
25075412--25075640	102	2.3	101	80	5	291	28	23	18	29	1.98
25075980--25076031	24	2.2	24	92	0	86	30	21	9	38	1.85
25090750--25090785	14	2.6	14	90	0	54	63	0	0	36	0.94
25099460--25099967	151	3.4	149	86	4	698	28	15	21	33	1.95
25099460--25099967	76	6.7	76	87	1	691	28	15	21	33	1.95
25100157--25100242	29	3.0	29	86	5	111	39	23	1	36	1.62
25101159--25101230	29	2.5	30	84	10	107	31	26	4	37	1.75
25102317--25102624	76	4.0	76	78	4	273	27	16	19	36	1.93
25102317--25102624	154	2.0	152	79	9	333	27	16	19	36	1.93
25102779--25102906	30	4.4	29	87	2	150	34	23	1	40	1.64
25103412--25103477	15	4.5	15	72	16	57	72	1	25	0	0.93
25103401--25103488	26	3.4	26	78	12	83	76	1	21	1	0.92
25103414--25103482	23	3.1	23	84	12	90	75	1	23	0	0.89
25103424--25103466	19	2.2	20	91	4	70	74	0	25	0	0.82
25103404--25103482	11	6.6	12	69	22	51	75	1	22	0	0.87
25112628--25114747	76	28.2	76	86	3	2769	28	16	20	33	1.95
25112628--25114747	151	14.1	152	86	3	2769	28	16	20	33	1.95
25119762--25119898	30	4.6	30	83	3	152	40	23	1	35	1.64
25119758--25119898	59	2.4	59	78	9	151	39	24	1	35	1.64
25120261--25120314	28	1.9	27	85	14	74	59	0	40	0	0.98
25120390--25120462	4	19.5	4	75	13	75	75	0	24	0	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25120396--25120449	15	3.7	15	95	2	92	72	0	27	0	0.85
25120397--25120462	11	6.0	11	79	11	64	74	0	25	0	0.82
25120393--25120460	7	9.9	7	69	15	52	76	0	23	0	0.79
25120422--25120479	10	6.1	9	78	11	53	77	1	20	0	0.86
25120436--25120487	18	2.8	18	76	2	59	80	1	15	1	0.88
25123472--25123537	33	2.0	33	93	0	114	24	21	6	48	1.72
25131877--25131911	16	2.2	16	100	0	70	57	5	5	31	1.46
25132998--25133028	3	10.3	3	100	0	62	67	0	0	32	0.91
25157228--25157364	56	2.6	52	82	9	145	27	20	29	22	1.98
25160318--25160347	5	6.0	5	92	0	51	16	0	3	80	0.85
25162379--25162425	24	1.9	24	86	4	67	36	0	38	25	1.56
25162836--25162985	27	5.6	27	86	3	214	42	22	17	18	1.89
25166336--25166383	21	2.3	20	82	3	51	58	0	25	16	1.38
25167235--25167293	10	5.8	10	82	4	55	59	1	3	35	1.24
25168355--25168403	20	2.4	21	80	10	57	40	2	4	53	1.32
25168503--25168562	10	6.4	9	72	12	50	33	3	1	61	1.22
25168503--25168548	10	4.7	10	83	2	58	34	4	0	60	1.16
25168503--25168548	20	2.4	19	85	3	65	34	4	0	60	1.16
25168888--25168926	16	2.4	16	86	4	51	56	0	5	38	1.22
25171813--25171851	19	2.0	20	90	5	62	53	2	0	43	1.14
25177681--25177831	74	2.0	74	97	0	284	42	13	14	29	1.84
25178199--25178327	43	3.0	43	76	13	147	31	27	17	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25179462--25179489	11	2.5	11	100	0	56	67	0	0	32	0.91
25185850--25185955	43	2.5	44	79	11	130	31	30	16	21	1.96
25187945--25187982	20	1.9	20	94	0	67	34	0	7	57	1.28
25188419--25188461	22	2.0	21	86	8	61	27	0	0	72	0.85
25192048--25192212	32	5.1	32	82	4	152	26	12	43	17	1.85
25193716--25193752	9	4.1	9	92	0	65	32	10	21	35	1.88
25193811--25193847	9	4.1	9	92	0	65	45	13	10	29	1.77
25194054--25194113	30	2.0	31	86	3	86	20	40	0	40	1.52
25195168--25195210	17	2.5	17	81	14	52	60	6	2	30	1.35
25200017--25200055	14	2.8	14	88	0	60	35	10	23	30	1.88
25202453--25202491	18	2.2	18	86	9	53	23	15	12	48	1.79
25206055--25206094	13	2.8	13	88	11	53	45	0	0	55	0.99
25206111--25206156	16	3.1	15	76	11	51	54	0	0	45	0.99
25213463--25213732	44	6.1	45	73	3	199	28	15	26	30	1.96
25213463--25213740	132	2.1	133	91	0	459	28	14	26	30	1.95
25213801--25213944	44	3.2	45	62	11	107	29	29	24	17	1.97
25213732--25214035	88	3.5	88	91	0	475	26	27	24	20	1.99
25214048--25214257	44	4.8	43	80	6	217	28	17	25	28	1.98
25215053--25215100	19	2.4	19	89	6	69	37	10	12	39	1.77
25215067--25215123	19	2.7	22	84	10	66	36	8	15	38	1.79
25215279--25215323	20	2.2	20	84	8	54	4	22	11	62	1.46
25215646--25215722	37	2.1	37	80	11	86	37	9	1	51	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25217107--25217136	16	1.9	15	93	6	51	46	3	0	50	1.18
25218443--25218478	16	2.4	14	86	13	54	55	8	2	33	1.44
25220592--25220638	22	2.0	24	88	8	71	40	0	0	59	0.97
25224403--25224444	9	4.7	9	82	11	59	88	9	2	0	0.61
25224401--25224458	15	4.1	15	73	22	54	86	8	3	1	0.76
25224400--25224459	27	2.3	27	82	11	79	83	11	3	1	0.84
25225808--25225933	44	2.8	44	82	4	137	27	21	23	26	1.99
25225796--25226450	143	4.6	142	86	3	895	29	20	23	27	1.99
25226415--25226758	179	1.9	179	89	1	528	31	20	18	30	1.96
25227956--25227987	4	8.0	4	92	0	55	25	3	0	71	1.00
25233529--25233987	143	3.2	143	89	0	675	28	19	22	29	1.98
25233529--25234042	143	3.6	143	87	0	668	29	20	22	28	1.98
25234008--25234541	44	11.9	44	72	8	310	31	20	20	27	1.98
25234002--25234541	179	3.0	178	92	2	877	31	20	20	27	1.98
25234815--25234861	24	2.0	24	87	4	69	51	31	4	12	1.59
25235748--25235790	4	10.2	4	84	5	50	27	2	2	67	1.15
25237077--25237149	36	2.0	37	89	2	112	49	1	2	46	1.24
25237222--25237274	25	2.0	27	82	13	67	54	5	5	33	1.47
25240151--25240253	48	2.1	48	96	0	188	28	13	27	31	1.94
25245849--25245886	19	2.0	19	89	0	58	28	23	13	34	1.92
25246652--25246694	22	2.0	20	82	8	50	46	0	32	20	1.51
25249605--25249636	15	2.1	15	94	0	55	68	9	6	15	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25251184--25251367	88	2.1	88	94	0	323	22	25	28	23	1.99
25252237--25252266	16	1.9	16	93	6	53	50	20	0	30	1.49
25252716--25252757	20	2.2	19	87	12	59	16	21	2	59	1.48
25252733--25252762	15	1.9	16	93	6	53	20	23	0	56	1.42
25253403--25253470	25	2.7	25	90	0	109	32	19	23	25	1.97
25256139--25256177	3	13.3	3	89	5	62	28	0	2	69	1.02
25261612--25261644	16	2.0	17	94	5	59	54	0	3	42	1.15
25262185--25262219	2	17.5	2	100	0	70	48	0	0	51	1.00
25264383--25264415	16	2.0	17	94	5	59	54	0	3	42	1.15
25274853--25274954	53	1.9	53	87	0	150	20	15	22	41	1.90
25274864--25275022	27	5.9	27	85	4	205	19	15	20	44	1.86
25278742--25278771	15	1.9	16	93	6	53	56	0	0	43	0.99
25278812--25279091	139	2.0	140	99	0	553	43	12	10	33	1.76
25288843--25288881	18	2.2	18	85	0	51	51	0	38	10	1.36
25300127--25300178	25	2.2	23	86	6	68	61	0	30	7	1.24
25301284--25301326	19	2.2	20	80	12	54	62	0	4	32	1.15
25301285--25301326	18	2.3	19	87	4	59	61	0	4	33	1.17
25306898--25306944	22	2.2	21	84	3	58	10	38	23	27	1.88
25309286--25309334	23	2.2	23	82	7	66	40	2	4	53	1.32
25311260--25311422	23	7.1	23	80	2	175	24	19	23	32	1.97
25311255--25311422	46	3.7	46	87	0	237	25	19	23	32	1.97
25311260--25311422	69	2.4	69	86	0	218	24	19	23	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25313689--25313714	6	4.3	6	100	0	52	30	0	0	69	0.89
25314076--25314114	16	2.4	16	95	0	69	15	48	10	25	1.76
25314076--25314121	16	2.9	16	90	0	56	15	47	13	23	1.80
25323188--25323214	5	5.4	5	100	0	54	0	22	0	77	0.76
25326005--25326057	27	2.0	27	81	7	63	41	3	9	45	1.54
25328484--25328533	26	1.9	26	91	0	82	30	20	24	26	1.98
25332728--25332783	29	1.9	29	85	7	78	51	14	7	26	1.67
25340232--25340320	30	3.0	30	88	0	124	20	21	32	25	1.97
25345774--25346039	27	10.2	27	74	13	173	41	22	16	19	1.90
25345771--25345967	81	2.5	80	81	4	245	41	22	16	19	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163