genome.fa.s4.2.7.7.80.10.50.1000.125.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  125  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40242406--40242607	3	67.7	3	97	2	381	67	0	32	0	0.91
40244751--40244862	34	3.4	32	69	18	102	55	8	3	32	1.48
40244736--40244876	68	2.1	68	100	0	282	56	8	2	31	1.44
40244767--40244873	34	3.1	34	67	19	105	53	8	3	34	1.49
40245991--40246040	25	2.0	26	84	11	68	30	12	8	50	1.68
40261022--40261059	19	2.0	19	89	0	58	36	0	0	63	0.95
40272723--40272752	11	2.7	11	89	0	51	50	0	3	46	1.18
40286004--40286107	49	2.1	49	85	3	138	24	21	27	26	1.99
40287815--40287849	10	3.4	10	96	4	61	57	0	0	42	0.99
40287804--40287898	20	5.2	18	69	20	65	52	0	1	46	1.07
40295414--40295440	1	27.0	1	100	0	54	100	0	0	0	0.00
40295249--40295647	199	2.0	199	97	0	746	32	20	12	34	1.90
40304238--40304281	18	2.3	20	88	7	65	63	2	0	34	1.07
40305223--40305339	59	2.0	59	91	0	189	52	8	11	27	1.67
40316476--40316518	17	2.6	16	82	10	50	41	2	2	53	1.26
40325544--40325585	21	2.0	20	86	13	59	50	0	9	40	1.35
40326995--40327081	9	9.4	9	72	5	66	33	4	16	45	1.67
40327032--40327089	28	2.1	27	90	3	89	34	1	12	51	1.49
40327041--40327104	28	2.5	25	80	12	69	32	4	10	51	1.58
40336120--40336160	16	2.5	16	88	4	55	39	2	0	58	1.11
40341734--40341766	15	2.1	17	88	11	52	39	0	3	57	1.14
40343590--40343656	22	3.1	21	73	12	57	38	1	2	56	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40344954--40345009	23	2.5	22	78	16	62	50	5	1	42	1.35
40348222--40348286	23	2.8	23	92	0	103	27	21	32	18	1.97
40358620--40358681	31	2.0	32	84	9	83	45	9	6	38	1.63
40359786--40359861	26	3.0	25	80	3	89	61	5	0	32	1.18
40360344--40360379	16	2.2	16	100	0	72	33	13	11	41	1.80
40360586--40360659	29	2.6	27	75	16	69	45	0	5	48	1.25
40364258--40364355	40	2.5	41	80	6	112	30	21	28	19	1.97
40364404--40364633	82	2.8	82	83	3	284	15	24	23	36	1.93
40364404--40364609	41	5.0	41	84	2	261	15	24	23	35	1.94
40364413--40364650	123	1.9	123	82	1	298	17	25	23	34	1.96
40365125--40365192	14	4.9	14	71	16	52	25	0	33	41	1.56
40367810--40367863	21	2.6	21	87	0	72	42	16	37	3	1.66
40368514--40368607	41	2.2	43	90	5	147	27	21	20	30	1.98
40371152--40371530	189	2.0	190	99	0	751	44	3	13	38	1.61
40383427--40383462	2	18.0	2	94	0	63	50	2	0	47	1.15
40401543--40401722	94	1.9	93	83	5	229	32	14	13	38	1.86
40407475--40407568	19	4.8	19	90	5	152	37	10	15	36	1.83
40407475--40407575	40	2.7	38	88	8	152	37	9	16	35	1.82
40407507--40407591	21	4.0	22	79	14	81	37	7	16	38	1.76
40407557--40407601	23	2.0	23	86	4	65	33	4	15	46	1.66
40412890--40412934	16	2.9	15	80	6	54	86	4	4	4	0.78
40415270--40416169	132	6.8	132	96	1	1630	27	18	24	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40416089--40416207	43	2.7	44	77	11	120	29	18	21	30	1.97
40416398--40416479	43	1.9	42	85	2	110	36	7	15	40	1.76
40416412--40416479	19	3.3	19	78	17	64	36	5	16	41	1.72
40416435--40416479	23	2.0	22	91	4	72	37	4	17	40	1.70
40416445--40416489	23	2.0	23	86	4	65	33	4	15	46	1.66
40427163--40427339	90	2.0	90	94	0	309	25	12	28	32	1.93
40430532--40430573	21	2.0	21	85	0	57	45	11	4	38	1.62
40434448--40434485	20	1.9	20	89	10	60	60	13	5	21	1.52
40437298--40437478	22	8.2	22	83	0	209	28	8	19	43	1.80
40437298--40437467	11	15.5	11	64	16	75	28	8	18	43	1.80
40437395--40437478	11	7.6	11	72	15	66	28	7	20	44	1.78
40437295--40437469	44	4.0	44	88	0	251	29	9	18	43	1.80
40442335--40442398	32	2.0	32	100	0	128	25	15	12	46	1.81
40447513--40447537	13	1.9	13	100	0	50	56	0	0	44	0.99
40452999--40453189	25	7.6	24	69	16	84	31	21	15	31	1.94
40453114--40453225	50	2.3	46	83	7	125	29	22	15	33	1.94
40454203--40454258	27	2.2	24	84	9	67	51	3	25	19	1.62
40456805--40456891	44	2.0	44	93	0	147	39	17	12	31	1.87
40462600--40462626	3	9.0	3	100	0	54	33	0	0	66	0.92
40465408--40465440	16	2.1	16	94	0	57	36	3	36	24	1.71
40465654--40465695	15	2.7	16	82	14	52	52	2	0	45	1.13
40465663--40465704	15	2.9	15	82	10	52	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40465870--40465917	26	1.9	25	84	16	64	52	2	0	45	1.12
40465825--40466053	92	2.5	92	83	8	236	47	3	3	44	1.38
40467446--40467472	11	2.5	11	100	0	54	51	18	7	22	1.70
40473246--40473406	37	4.3	38	89	4	231	55	12	26	5	1.58
40473246--40473403	73	2.1	75	89	3	239	56	12	25	5	1.57
40477461--40477571	49	2.3	50	81	6	120	30	30	18	20	1.96
40488172--40488243	5	13.6	5	72	23	51	22	1	1	75	0.96
40488172--40488251	32	2.5	32	78	13	78	22	2	1	73	1.02
40488173--40488251	31	2.7	29	75	11	72	21	2	1	74	1.01
40503735--40503775	21	2.0	21	85	0	55	21	24	17	36	1.94
40507304--40507348	21	2.0	21	87	8	63	22	2	6	68	1.24
40510510--40510576	34	1.9	35	87	3	100	32	8	13	44	1.75
40511587--40511624	17	2.4	16	83	12	51	28	0	5	65	1.14
40513245--40513325	31	2.6	31	82	0	108	34	16	23	25	1.95
40514532--40514569	11	3.3	12	85	10	53	63	0	0	36	0.95
40516706--40516732	13	2.1	13	100	0	54	29	7	22	40	1.81
40528041--40528092	20	2.7	20	81	3	70	44	0	1	53	1.11
40528541--40528603	30	2.1	30	93	0	108	28	3	11	57	1.49
40529148--40529198	24	2.2	23	89	3	75	41	7	0	50	1.31
40529237--40529286	21	2.3	22	80	10	59	46	0	6	48	1.27
40531114--40531180	30	2.2	31	81	7	75	26	8	2	61	1.41
40534181--40534324	44	3.1	43	68	24	105	25	15	15	43	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40534142--40534343	94	2.1	94	87	0	305	27	13	16	41	1.87
40534144--40534302	50	3.3	49	70	21	138	26	11	17	44	1.84
40534297--40534491	94	2.1	94	80	1	212	27	20	16	35	1.94
40534334--40534516	94	1.9	94	82	2	224	28	20	15	34	1.94
40534461--40534838	44	8.3	44	69	12	183	28	20	16	33	1.95
40534389--40534852	138	3.4	137	85	3	633	29	20	16	34	1.94
40535468--40535678	117	1.8	117	88	0	323	22	10	22	44	1.83
40536528--40536634	51	2.1	51	96	0	196	26	9	28	35	1.87
40536932--40537000	9	7.7	9	84	9	88	42	20	10	27	1.84
40536932--40537000	27	2.6	27	84	9	104	42	20	10	27	1.84
40537078--40537103	5	5.2	5	100	0	52	0	0	57	42	0.98
40537088--40537140	18	2.9	18	74	2	52	11	1	43	43	1.51
40546632--40546773	32	4.4	33	77	12	143	27	7	19	46	1.75
40546638--40546773	64	2.1	64	93	0	227	27	7	19	45	1.76
40547158--40547307	44	3.3	44	67	20	108	24	24	19	32	1.98
40547143--40547413	94	2.9	95	86	3	354	28	22	18	30	1.97
40550049--40550115	18	3.7	18	77	0	80	41	20	7	29	1.80
40550049--40550115	27	2.5	27	80	4	73	41	20	7	29	1.80
40550049--40550115	9	7.4	9	78	6	64	41	20	7	29	1.80
40552544--40552830	56	5.1	56	82	4	296	43	16	10	28	1.82
40552552--40552830	113	2.5	113	84	2	339	43	16	10	29	1.82
40553629--40553682	23	2.3	23	90	0	81	9	1	50	38	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40565004--40565055	9	5.6	9	90	4	68	36	0	0	63	0.95
40564995--40565055	19	3.2	19	83	2	77	34	0	0	65	0.93
40565020--40565079	19	3.2	19	79	9	61	36	0	3	60	1.14
40568561--40568611	23	2.2	23	89	6	77	41	19	9	29	1.84
40571505--40571543	17	2.3	17	86	8	53	33	17	28	20	1.96
40573460--40573492	15	2.1	16	94	5	59	30	6	0	63	1.18
40576421--40576485	30	2.1	31	85	2	87	50	3	1	44	1.26
40585841--40585878	17	2.2	17	100	0	76	21	0	7	71	1.11
40599346--40599447	29	3.5	29	69	20	70	66	2	6	23	1.30
40599347--40599448	19	5.2	20	66	17	63	66	2	6	23	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163