genome.fa.s4.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr7
Parameters: 2 7 7 80 10 50 1000
Length:  55462051

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   

This is table  131  of  163  ( 19464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42261158--42261224	27	2.5	27	97	0	125	11	32	23	31	1.91
42261287--42261330	16	2.9	15	80	12	54	61	2	0	36	1.09
42272363--42272409	22	2.1	23	84	4	60	63	8	12	14	1.50
42272719--42273003	20	14.4	20	68	14	110	49	10	17	22	1.77
42273488--42273534	22	2.1	23	84	4	60	63	8	12	14	1.50
42273844--42273899	20	2.8	19	74	15	51	46	12	14	26	1.80
42273894--42274148	20	12.9	20	67	13	71	49	10	18	21	1.77
42274003--42274150	40	3.7	40	76	8	122	50	11	18	19	1.77
42274559--42274669	57	1.9	57	89	7	172	25	27	18	29	1.98
42282442--42282596	74	2.1	75	97	2	294	65	5	2	26	1.26
42282485--42282598	22	4.8	23	68	18	81	66	3	1	28	1.18
42283053--42283132	28	2.8	28	73	17	74	28	3	3	63	1.29
42294892--42294927	2	18.0	2	94	0	63	50	0	2	47	1.15
42302411--42302875	232	2.0	233	99	0	923	41	10	9	38	1.72
42309925--42309949	2	12.5	2	100	0	50	52	0	0	48	1.00
42315789--42315820	2	16.0	2	100	0	64	50	0	0	50	1.00
42325967--42326027	21	2.9	21	81	16	65	50	0	44	4	1.23
42327822--42327911	31	2.9	31	85	5	119	48	11	3	36	1.55
42328103--42328141	19	2.1	19	85	9	53	41	2	0	56	1.13
42329722--42329782	18	3.5	17	77	8	70	60	1	1	36	1.16
42335824--42335855	14	2.2	15	94	5	57	25	12	6	56	1.59
42348277--42348352	38	2.0	38	100	0	152	23	21	13	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42350525--42350552	2	14.0	2	100	0	56	50	0	0	50	1.00
42353117--42353163	21	2.2	21	77	7	51	36	0	0	63	0.94
42353796--42353854	29	2.0	30	93	3	102	25	16	22	35	1.95
42368364--42368401	20	1.9	20	89	10	60	50	2	0	47	1.15
42377897--42378160	131	2.0	132	99	0	521	37	15	17	30	1.90
42383702--42383753	21	2.5	22	75	9	54	67	1	0	30	1.02
42388901--42388962	3	20.7	3	96	0	115	33	1	0	64	1.03
42399959--42399992	11	3.1	11	82	0	50	58	8	0	32	1.29
42407625--42407655	11	2.8	11	95	0	53	41	25	0	32	1.56
42407774--42407799	2	13.0	2	100	0	52	50	0	0	50	1.00
42420079--42420111	15	2.2	15	94	0	57	0	24	6	69	1.10
42421790--42421821	16	2.0	16	93	0	55	18	9	0	71	1.12
42421885--42421942	9	6.5	8	77	14	53	77	1	5	15	1.02
42438441--42438485	2	22.5	2	90	0	72	4	0	44	51	1.21
42440624--42440692	21	3.3	21	87	0	84	42	14	24	18	1.88
42440858--42440926	21	3.3	21	87	0	84	42	14	24	18	1.88
42440500--42440958	234	2.0	234	100	0	918	40	20	17	21	1.91
42443247--42443315	21	3.3	21	87	0	84	42	14	24	18	1.88
42445863--42445927	29	2.3	27	78	10	67	38	13	10	36	1.80
42447795--42447834	16	2.6	15	84	4	53	45	22	0	32	1.53
42450589--42450622	3	11.3	3	100	0	68	64	0	0	35	0.94
42451090--42451211	59	2.1	58	92	1	199	17	17	13	51	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42452096--42452138	18	2.4	18	80	0	50	53	11	13	20	1.71
42467139--42467175	13	2.9	13	96	4	67	45	8	21	24	1.78
42491647--42491671	12	2.1	12	100	0	50	68	8	8	16	1.38
42492858--42492889	12	2.5	13	95	5	57	40	0	0	59	0.97
42494134--42494176	23	1.9	22	81	13	52	60	6	0	32	1.23
42494270--42494312	23	1.9	22	81	13	52	60	6	0	32	1.23
42498179--42498208	2	15.0	2	100	0	60	50	0	0	50	1.00
42500740--42500769	3	10.0	3	100	0	60	66	0	33	0	0.92
42503998--42504049	27	1.9	27	96	0	95	44	17	13	25	1.85
42504668--42504722	20	3.1	17	84	12	58	40	14	5	40	1.69
42504686--42504725	20	2.0	20	100	0	80	35	15	5	45	1.68
42509349--42509384	19	1.9	19	94	5	65	27	2	0	69	1.02
42509766--42509806	15	2.5	17	80	11	59	65	0	0	34	0.93
42510117--42510142	6	4.3	6	100	0	52	30	38	15	15	1.88
42520808--42520849	22	1.9	22	90	0	66	59	9	14	16	1.60
42520814--42520856	11	3.9	11	78	0	50	60	11	11	16	1.59
42524904--42525004	52	1.9	52	84	4	132	28	27	19	23	1.99
42528150--42528211	23	2.9	21	76	9	70	66	1	0	32	1.02
42528316--42528395	10	7.6	10	72	12	54	40	3	1	55	1.26
42528744--42528793	26	1.9	26	87	0	73	28	12	12	48	1.76
42538811--42538955	58	2.5	59	84	4	177	52	10	14	22	1.72
42539166--42539239	8	8.5	8	72	20	51	64	2	0	32	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42540091--42540147	16	3.6	16	95	0	87	29	0	36	33	1.58
42540393--42540427	18	2.0	17	88	5	52	54	0	0	45	0.99
42541974--42542004	12	2.6	12	100	0	62	29	25	0	45	1.54
42567510--42567547	14	2.7	14	88	8	51	68	7	0	23	1.16
42569667--42569728	31	2.0	31	84	3	81	40	9	12	37	1.77
42573221--42573467	123	2.0	123	94	1	433	25	27	18	29	1.98
42582474--42582499	12	2.2	12	100	0	52	46	30	0	23	1.53
42584600--42584758	79	2.0	80	90	1	248	40	14	10	35	1.80
42589997--42590047	25	2.0	25	100	0	102	41	15	19	23	1.90
42591928--42591958	15	2.1	15	100	0	62	54	0	6	38	1.26
42592130--42592176	19	2.2	20	82	14	51	57	6	0	36	1.24
42604830--42604883	18	2.9	19	78	8	67	40	3	1	53	1.29
42604824--42604877	19	2.9	18	83	5	63	38	1	1	57	1.20
42605940--42605990	23	2.2	23	96	0	93	41	19	9	29	1.84
42613966--42614192	91	2.6	86	80	6	208	38	14	8	38	1.76
42614028--42614192	83	1.9	84	86	7	233	38	15	9	36	1.80
42614294--42614382	28	3.2	28	78	12	78	69	1	2	26	1.07
42614754--42614795	11	3.7	11	84	9	50	21	11	0	66	1.23
42614827--42614868	19	2.2	19	91	0	66	38	2	0	59	1.10
42614804--42614890	10	8.8	10	71	12	63	34	4	1	59	1.25
42614908--42614965	28	2.0	30	93	6	102	34	0	1	63	1.04
42621524--42621558	18	1.9	18	100	0	70	77	5	0	17	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42621828--42621860	15	2.2	15	94	0	57	69	0	30	0	0.88
42622221--42622289	36	1.9	36	96	0	129	18	10	21	49	1.77
42622266--42622311	22	2.1	22	100	0	92	23	8	13	54	1.66
42622234--42622347	58	2.0	58	100	0	228	20	10	19	50	1.77
42622271--42622318	22	2.2	22	88	0	69	18	12	18	50	1.78
42623849--42624075	95	2.4	92	85	7	278	49	17	7	25	1.73
42623829--42624044	99	2.2	95	89	4	317	47	19	7	25	1.75
42623939--42624007	27	2.5	26	83	6	75	49	14	7	28	1.70
42623948--42624007	26	2.3	25	80	8	66	51	13	6	28	1.66
42623961--42624116	67	2.3	68	87	3	226	50	18	7	24	1.72
42625796--42625825	15	2.0	15	93	0	51	40	36	6	16	1.75
42625929--42626062	62	2.2	62	91	4	218	46	21	8	23	1.79
42626321--42626390	6	11.7	6	85	0	77	61	11	5	21	1.50
42626299--42626398	12	8.5	12	81	4	78	59	14	6	21	1.56
42626294--42626390	18	5.6	18	81	3	101	60	13	5	20	1.52
42626481--42626517	16	2.3	16	95	0	65	48	16	8	27	1.74
42626930--42626972	21	2.1	20	91	4	68	25	23	20	30	1.99
42634082--42634119	19	2.0	19	85	10	51	5	0	26	68	1.11
42651212--42651237	11	2.4	11	100	0	52	26	0	7	65	1.20
42654866--42654913	25	1.9	25	100	0	96	41	10	27	20	1.85
42657819--42657854	18	2.0	18	94	0	63	41	22	8	27	1.82
42662957--42663000	16	2.6	16	79	10	52	47	4	0	47	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42663732--42663785	24	2.2	25	96	3	101	46	9	12	31	1.74
42669631--42669669	17	2.3	17	86	0	51	2	20	7	69	1.26
42670018--42670071	18	3.0	16	86	13	54	38	1	1	57	1.20
42670033--42670071	18	2.2	17	95	4	69	41	0	0	58	0.98
42670235--42670286	21	2.5	21	84	9	70	30	34	5	28	1.81
42671378--42671408	15	2.1	15	93	0	53	54	6	0	38	1.26
42673191--42673357	84	2.0	84	98	0	325	26	20	19	32	1.97
42676672--42676712	18	2.3	18	91	0	64	51	36	9	2	1.48
42686365--42686412	20	2.4	18	78	18	51	8	2	12	77	1.08
42694747--42694933	47	4.0	47	100	0	374	38	25	14	20	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163