genome.fa.s334.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  102  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19332987--19334084	543	2.0	543	88	1	1603	35	20	7	35	1.81
19335507--19335554	22	2.2	22	92	0	78	47	0	0	52	1.00
19336202--19336310	56	1.9	57	86	1	157	38	8	6	46	1.59
19337814--19337939	44	2.9	44	83	2	128	35	17	13	33	1.89
19337858--19337990	44	3.0	45	80	6	130	37	13	15	33	1.86
19338010--19338485	124	3.9	124	74	7	421	42	14	11	31	1.82
19338384--19338456	33	2.2	34	82	7	87	43	13	12	30	1.81
19344392--19344429	18	2.1	19	95	5	69	5	21	10	63	1.46
19350514--19350590	40	1.9	40	81	5	93	68	3	3	23	1.23
19355362--19355400	10	3.8	10	83	6	51	10	0	15	74	1.07
19355363--19355410	11	4.5	11	84	2	62	6	0	16	77	0.97
19355360--19355401	21	2.0	21	95	0	75	11	0	16	71	1.14
19358986--19359015	5	6.0	5	96	0	51	3	20	0	76	0.92
19366028--19366061	17	2.0	17	94	0	59	85	8	0	5	0.75
19367188--19367633	120	3.7	118	76	6	400	18	21	14	45	1.85
19367071--19367654	238	2.5	238	82	3	701	19	21	14	44	1.86
19367014--19367694	119	5.7	119	74	8	516	18	21	14	44	1.86
19367858--19367935	26	3.0	26	81	5	86	24	25	20	29	1.99
19367971--19368003	3	11.7	3	87	12	52	27	0	0	72	0.85
19368405--19368434	12	2.6	12	94	5	53	16	0	13	70	1.18
19368765--19368806	20	2.1	20	86	0	57	33	26	23	16	1.96
19375615--19375656	11	3.7	11	84	6	57	7	2	21	69	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19375612--19375666	23	2.4	23	81	0	74	10	5	20	63	1.46
19375711--19375755	23	2.0	23	90	0	72	8	8	20	62	1.51
19375602--19375841	99	2.4	98	86	2	327	17	5	20	56	1.61
19376392--19376435	17	2.6	17	82	3	54	52	15	11	20	1.74
19380510--19380575	30	2.1	30	86	5	87	25	9	6	59	1.51
19387062--19387111	6	8.2	6	84	10	66	2	28	4	66	1.21
19396615--19396803	62	3.0	61	72	9	175	36	13	10	39	1.79
19403576--19403629	28	1.9	28	92	0	90	20	14	22	42	1.88
19405988--19406028	11	3.7	12	81	12	52	75	0	2	21	0.92
19405992--19406027	19	1.9	20	88	11	58	75	0	2	22	0.94
19405991--19406034	20	2.3	19	80	11	54	77	0	4	18	0.94
19410315--19410358	11	3.8	11	79	8	52	84	2	11	2	0.81
19412702--19412931	79	2.9	81	76	8	240	32	13	16	37	1.87
19413027--19413119	32	2.8	33	87	6	136	29	10	13	46	1.78
19414089--19414234	46	3.1	47	84	1	170	32	8	16	42	1.78
19415036--19415499	42	10.7	42	77	9	423	40	18	13	27	1.89
19415066--19415498	175	2.5	176	86	4	592	39	19	13	27	1.89
19415358--19415498	47	3.1	45	68	17	130	43	17	12	27	1.84
19415066--19415503	89	5.0	90	83	7	521	39	19	13	27	1.89
19423331--19423381	25	2.0	25	84	0	66	68	3	0	27	1.07
19424162--19424199	13	2.8	13	82	17	51	57	34	0	7	1.28
19424162--19424199	14	2.7	15	88	11	55	57	34	0	7	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19424215--19424328	7	18.3	6	71	16	65	42	35	3	19	1.68
19424215--19424321	25	4.3	25	89	8	157	41	35	3	19	1.70
19424231--19424313	18	4.8	18	71	21	70	38	38	3	19	1.69
19424313--19424358	18	2.6	18	82	0	56	43	36	4	15	1.66
19427525--19427549	6	4.2	6	100	0	50	52	16	16	16	1.76
19427603--19427656	14	3.9	14	73	9	56	29	7	18	44	1.77
19428547--19428590	22	2.0	21	91	4	70	56	4	15	22	1.57
19428547--19428585	11	3.5	11	85	0	60	58	2	15	23	1.49
19428550--19428596	21	2.2	22	84	3	60	63	4	12	19	1.44
19428623--19428652	15	1.9	15	93	6	51	13	6	0	80	0.91
19428623--19428671	9	5.7	9	77	18	50	10	12	0	77	0.99
19428625--19428676	18	3.1	16	82	15	61	9	13	0	76	1.01
19430138--19430219	22	3.7	22	76	0	83	25	7	28	39	1.82
19430234--19430360	41	3.1	41	82	1	148	38	7	12	40	1.72
19430259--19430679	40	10.4	40	73	9	203	36	8	14	40	1.77
19430745--19430789	22	2.1	22	83	4	56	26	20	4	48	1.68
19433172--19433231	20	3.0	20	79	15	63	1	15	3	80	0.93
19433172--19433235	6	10.2	6	77	15	67	1	15	3	79	0.93
19440255--19440334	9	8.4	9	74	10	54	12	0	10	77	0.99
19440265--19440333	19	3.7	19	78	16	65	14	0	10	75	1.05
19440322--19440348	14	1.9	14	100	0	54	11	0	7	81	0.87
19440268--19440350	10	9.1	9	72	21	50	14	0	10	74	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19440538--19440854	49	6.5	50	81	6	253	37	22	13	26	1.91
19440582--19440895	49	6.4	49	85	6	381	36	24	13	26	1.92
19440582--19441126	99	5.4	96	74	14	391	37	23	12	26	1.91
19440831--19440961	66	1.9	68	89	7	203	39	22	14	23	1.91
19440904--19441126	49	4.6	49	78	8	206	39	22	11	27	1.88
19440687--19441109	215	2.0	211	85	7	568	38	23	13	25	1.91
19440639--19441128	266	1.9	260	86	5	698	37	23	12	26	1.90
19451659--19451716	17	3.6	17	75	6	50	10	0	10	79	0.94
19451658--19451714	26	2.2	25	81	9	62	10	0	10	78	0.95
19454568--19454616	24	2.1	22	85	14	64	14	0	10	75	1.04
19475293--19475343	23	2.3	22	86	6	68	80	5	11	1	0.97
19475793--19475847	20	2.7	19	83	13	65	72	0	25	1	0.94
19482259--19482426	43	3.8	44	75	10	146	31	13	17	37	1.89
19482346--19482443	43	2.3	43	84	5	119	28	9	21	40	1.84
19482786--19482832	24	2.0	24	91	4	78	34	6	14	44	1.71
19482825--19483036	116	1.8	117	84	3	293	25	12	21	40	1.88
19483285--19483350	9	7.4	9	76	10	64	68	10	1	19	1.27
19483285--19483354	26	2.7	26	81	2	86	65	12	1	20	1.33
19483293--19483364	34	2.1	34	82	10	85	68	12	1	18	1.28
19484349--19484399	26	1.9	27	84	4	68	11	0	37	50	1.39
19484360--19484397	12	2.8	13	84	15	51	7	0	42	50	1.31
19484453--19484488	18	2.0	18	88	0	54	16	0	33	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19484464--19484512	25	2.0	25	84	8	64	10	4	36	48	1.56
19484539--19484658	7	18.7	7	72	16	64	15	0	35	47	1.52
19484570--19484651	25	3.3	25	75	14	80	15	0	32	51	1.44
19484575--19484658	31	2.6	31	80	10	89	16	0	33	50	1.46
19488691--19488792	20	4.5	24	71	22	78	50	0	0	48	1.07
19488694--19488792	22	4.5	22	75	16	82	50	1	0	48	1.07
19488703--19489133	18	22.8	19	64	23	78	47	1	3	48	1.26
19488743--19488798	25	2.2	26	81	12	71	46	3	0	50	1.19
19488828--19488939	49	2.3	49	83	6	138	43	0	4	51	1.21
19488850--19488916	21	3.2	21	78	12	66	44	0	5	49	1.27
19488896--19488947	26	2.0	27	88	3	79	42	0	1	55	1.10
19488980--19489084	51	2.1	51	84	10	135	53	0	1	44	1.11
19489106--19489147	8	5.2	8	78	21	52	42	0	0	57	0.99
19489103--19489144	14	3.1	14	86	6	61	45	0	0	54	0.99
19490384--19490432	25	1.9	25	83	4	62	51	2	4	42	1.32
19490583--19490627	21	2.2	21	84	7	58	40	8	0	51	1.33
19491675--19491731	16	3.6	16	86	11	82	52	1	0	45	1.11
19493142--19493185	21	2.0	22	82	4	54	47	0	18	34	1.49
19498707--19498758	27	1.9	28	84	7	72	57	5	1	34	1.33
19499041--19499078	9	4.3	9	81	18	53	60	2	0	36	1.11
19501664--19501693	10	3.1	10	95	4	53	36	0	0	63	0.95
19502467--19502495	2	14.5	2	100	0	58	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19502563--19502650	45	1.9	46	86	9	126	31	4	2	61	1.28
19502572--19502848	139	2.0	133	85	4	365	34	5	8	51	1.54
19502620--19502876	139	1.9	137	83	8	337	36	5	9	48	1.57
19503203--19503257	20	2.8	19	76	10	58	54	0	0	45	0.99
19509530--19509561	11	2.9	11	95	0	55	31	0	15	53	1.43
19513476--19513513	6	6.3	6	100	0	76	50	15	0	34	1.45
19517681--19517728	25	1.9	26	87	8	73	58	6	4	31	1.42
19517520--19517865	144	2.4	145	77	5	317	42	11	11	34	1.77
19521705--19521791	37	2.4	36	78	1	93	17	1	31	50	1.53
19524682--19524987	120	2.5	119	80	6	305	43	11	10	34	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160