genome.fa.s334.2.7.7.80.10.50.1000.49.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  49  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10687226--10687675	188	2.3	191	80	11	497	33	16	15	34	1.90
10687366--10687671	105	3.0	102	78	13	328	32	16	16	35	1.91
10687459--10687649	95	2.0	95	86	8	264	31	15	15	37	1.89
10688037--10688061	2	12.5	2	100	0	50	0	48	0	52	1.00
10688308--10688347	15	2.7	15	84	0	53	37	12	27	22	1.90
10688342--10688425	38	2.2	38	91	0	132	32	17	21	28	1.96
10688381--10688614	130	1.8	130	92	0	396	32	12	20	33	1.91
10688601--10688634	12	2.8	12	90	0	50	44	5	23	26	1.76
10688794--10688835	15	2.8	15	92	0	75	40	11	26	21	1.88
10688966--10689185	34	6.6	34	70	11	123	33	15	16	34	1.90
10689057--10689187	66	2.0	66	83	8	169	34	13	17	34	1.89
10688966--10689185	100	2.2	100	78	4	230	33	15	16	34	1.90
10689373--10689474	22	4.6	22	82	9	127	23	17	23	35	1.95
10689373--10689474	44	2.3	44	89	3	152	23	17	23	35	1.95
10691597--10691639	19	2.2	20	84	8	54	4	11	4	79	1.04
10691649--10691674	5	5.2	5	100	0	52	19	0	0	80	0.71
10694480--10694520	3	13.7	3	100	0	82	34	0	0	65	0.93
10694553--10694622	18	3.6	18	77	17	68	37	2	11	48	1.54
10694553--10694650	41	2.4	41	84	0	124	35	3	10	51	1.52
10694480--10694653	23	7.5	22	76	11	111	35	1	8	54	1.42
10695481--10695551	21	3.3	21	71	24	60	18	1	5	74	1.08
10695491--10695550	19	3.3	19	79	6	70	20	0	6	73	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10699673--10699710	19	2.0	20	94	5	69	81	0	5	13	0.85
10700007--10700053	6	7.7	6	85	4	67	82	0	2	14	0.75
10700005--10700064	26	2.3	26	91	5	95	81	0	5	13	0.84
10700007--10700062	19	2.9	19	82	15	71	82	0	5	12	0.83
10700710--10700744	11	3.2	11	87	0	52	28	8	8	54	1.60
10700830--10701020	55	3.5	55	81	1	213	22	21	13	42	1.87
10700833--10701062	55	4.2	55	81	2	205	22	20	14	42	1.88
10700830--10701044	110	2.0	110	82	5	265	22	20	13	42	1.87
10701274--10701333	5	12.4	5	92	7	106	40	0	0	60	0.97
10701302--10701371	28	2.5	28	78	0	68	40	1	8	50	1.42
10701277--10701410	10	12.9	10	78	13	92	38	1	8	51	1.41
10701340--10701395	23	2.4	24	84	3	69	39	3	12	44	1.60
10701340--10701409	23	3.0	23	80	12	63	37	2	12	47	1.57
10701376--10701410	15	2.2	16	90	5	54	34	0	14	51	1.42
10703716--10703774	30	2.0	30	96	0	109	23	11	27	37	1.90
10706489--10706521	15	2.1	16	88	5	50	6	0	18	75	1.00
10707134--10707168	18	1.9	18	100	0	70	11	14	45	28	1.79
10713902--10713957	19	3.1	19	76	16	57	51	3	5	39	1.42
10724446--10724494	16	3.0	16	85	8	55	18	8	0	73	1.07
10724455--10724494	17	2.4	16	87	4	53	17	5	0	77	0.94
10724516--10724551	18	2.0	18	88	0	54	16	2	5	75	1.12
10724214--10724624	224	1.9	214	87	7	599	20	7	8	63	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10725764--10725804	18	2.4	17	87	4	55	2	7	12	78	1.06
10726008--10726078	24	3.0	23	75	6	61	39	1	1	57	1.16
10729385--10729511	61	2.1	62	80	4	141	27	5	14	52	1.63
10735663--10735710	14	3.4	14	85	0	69	22	0	33	43	1.54
10735663--10735712	21	2.4	21	82	0	64	22	0	36	42	1.54
10736689--10736731	9	4.3	9	81	18	50	4	13	0	81	0.84
10737837--10737875	17	2.3	17	86	8	53	35	7	17	38	1.79
10738126--10738184	31	1.9	31	85	0	82	28	16	11	42	1.84
10738802--10738920	18	6.6	17	75	16	98	4	13	0	82	0.81
10738802--10738920	35	3.3	36	73	11	109	4	13	0	82	0.81
10738802--10738920	34	3.3	33	74	17	105	4	13	0	82	0.81
10738806--10738885	1	80.0	1	75	0	52	2	12	0	85	0.71
10738799--10738920	10	13.1	9	75	14	106	4	13	0	81	0.82
10740038--10740078	14	2.9	14	85	0	55	53	4	9	31	1.55
10741328--10741410	21	3.8	21	72	20	55	6	14	1	78	1.00
10741328--10741396	14	5.3	14	76	13	58	4	14	1	79	0.95
10741333--10741419	26	3.5	25	73	17	74	5	13	1	79	0.97
10745698--10745767	35	2.0	35	88	5	106	52	1	8	37	1.41
10747097--10747143	18	2.6	18	80	10	51	10	0	8	80	0.89
10747094--10747171	31	2.5	30	80	13	79	8	1	10	79	0.99
10748797--10748860	26	2.4	27	78	14	80	23	0	34	42	1.55
10748840--10748921	7	11.7	7	72	5	58	21	0	32	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10749903--10749942	21	1.9	21	89	0	62	5	12	2	80	0.98
10767240--10767313	33	2.2	33	80	4	87	44	2	13	39	1.58
10771424--10771457	3	11.3	3	100	0	68	67	0	0	32	0.91
10771456--10771502	3	16.0	3	95	4	87	34	0	0	65	0.93
10771909--10771958	24	2.1	23	82	14	57	58	2	0	40	1.10
10774251--10774322	37	1.9	37	86	10	103	30	19	9	40	1.84
10777823--10777880	3	19.3	3	89	0	89	62	0	37	0	0.96
10783268--10783315	22	2.1	23	85	11	64	52	2	4	41	1.32
10787827--10788028	61	3.3	60	83	6	230	30	10	14	44	1.79
10788070--10788256	61	3.1	60	76	9	200	43	11	10	34	1.75
10788070--10788224	59	2.6	61	83	4	190	44	10	9	35	1.71
10794559--10794610	21	2.4	21	87	9	70	11	1	7	78	1.02
10794612--10794649	15	2.8	14	88	11	53	34	0	0	65	0.93
10794776--10794856	18	4.2	19	70	26	64	39	6	7	46	1.57
10804478--10804510	9	3.8	9	92	8	59	87	0	0	12	0.53
10804480--10804510	8	3.8	8	95	4	53	90	0	0	9	0.46
10804479--10804510	17	1.9	16	93	6	55	90	0	0	9	0.45
10805551--10805954	129	3.1	129	78	8	412	25	13	15	46	1.81
10805509--10805930	214	2.0	211	81	8	489	25	13	15	46	1.81
10805510--10805990	171	2.8	171	81	5	521	25	12	15	46	1.82
10805509--10805990	214	2.3	212	78	9	487	25	12	15	46	1.82
10806238--10806270	15	2.2	15	89	10	50	87	0	3	9	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10814446--10814507	21	3.0	21	72	11	65	32	1	46	19	1.59
10814451--10814514	20	3.2	20	69	10	58	32	1	45	20	1.61
10816972--10817026	20	2.7	20	82	2	74	30	20	16	32	1.94
10822545--10822597	23	2.2	25	86	6	74	50	18	5	24	1.68
10822623--10822649	12	2.2	12	100	0	54	48	22	0	29	1.51
10828733--10828821	34	2.6	34	78	1	88	29	15	16	38	1.90
10828969--10829087	34	3.4	34	72	16	118	26	13	18	42	1.87
10828969--10829170	34	5.8	34	69	12	117	26	14	19	39	1.90
10828768--10829333	305	1.9	305	86	0	819	29	13	17	39	1.88
10829274--10829348	34	2.2	34	82	0	87	33	14	13	38	1.85
10831260--10831314	20	2.8	19	89	8	83	27	3	0	69	1.05
10833044--10833076	16	2.1	16	88	11	50	39	3	3	54	1.31
10833830--10833903	29	2.5	30	80	6	89	55	2	9	32	1.46
10838540--10838572	17	2.0	17	88	5	50	51	0	0	48	1.00
10838721--10838770	23	2.2	22	82	6	64	38	0	0	62	0.96
10840950--10840997	16	3.1	16	80	17	64	37	0	10	52	1.36
10843620--10843726	19	5.7	19	73	7	85	22	0	38	39	1.54
10843629--10843726	38	2.6	38	77	9	110	24	0	37	37	1.56
10843717--10843756	7	5.6	7	85	5	53	22	0	27	50	1.50
10843717--10843748	15	2.1	15	94	0	55	18	0	28	53	1.45
10845232--10845515	143	2.0	142	86	4	403	43	13	12	30	1.80
10845269--10845546	143	1.9	143	83	5	339	44	13	11	30	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10846358--10846397	19	2.1	19	95	0	71	32	10	37	20	1.85
10846401--10846499	31	3.2	29	75	11	83	42	8	23	26	1.81
10847367--10847466	22	4.5	22	78	5	94	31	10	23	36	1.87
10847363--10847446	44	1.9	44	87	0	123	32	8	25	34	1.85
10847592--10848015	40	10.5	38	69	14	190	36	11	15	36	1.83
10847827--10848015	41	4.7	40	73	14	111	32	11	17	37	1.86
10847595--10848015	81	5.2	80	72	6	278	36	10	15	36	1.83
10849856--10849889	12	3.0	12	87	12	54	5	17	0	76	0.98
10854849--10854941	19	4.9	19	77	7	100	20	1	39	38	1.60
10854853--10854941	37	2.4	38	79	7	94	21	1	40	37	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160