genome.fa.s334.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  116  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21780278--21780311	17	2.0	17	94	0	59	38	0	5	55	1.24
21783845--21783925	41	2.0	41	87	4	119	44	11	4	39	1.62
21786315--21786347	2	16.5	2	100	0	66	51	0	48	0	1.00
21790650--21790682	7	4.6	7	96	3	57	57	27	15	0	1.38
21791567--21791599	2	17.0	2	93	6	59	48	0	0	51	1.00
21791671--21791720	21	2.3	22	80	13	59	52	0	0	48	1.00
21791690--21791760	27	2.7	27	78	20	71	49	2	1	46	1.25
21793125--21793186	27	2.4	27	82	12	69	50	0	0	50	1.00
21793125--21793186	25	2.4	26	80	17	60	50	0	0	50	1.00
21798385--21799466	355	3.0	350	83	2	1349	36	11	13	37	1.82
21806771--21806823	21	2.5	21	81	0	52	45	16	22	15	1.85
21808543--21808600	25	2.3	25	87	0	80	34	3	5	56	1.38
21812154--21812220	33	2.0	33	97	0	125	44	11	16	26	1.82
21812717--21812754	17	2.2	18	85	4	51	55	7	13	23	1.64
21812878--21812936	7	8.4	7	83	10	68	28	0	27	44	1.55
21812882--21812955	14	5.3	14	77	9	80	24	0	29	45	1.53
21812878--21812952	21	3.5	20	77	13	71	26	0	28	45	1.54
21812884--21812972	28	3.2	28	76	10	92	29	0	24	46	1.53
21816309--21816702	199	2.0	197	79	12	434	38	10	6	45	1.63
21816728--21816784	12	4.9	11	76	23	55	71	8	1	17	1.19
21817808--21818032	41	5.4	41	85	5	292	48	12	12	26	1.77
21817810--21818032	83	2.7	83	86	5	292	48	13	12	26	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21817808--21818034	125	1.8	124	87	2	339	48	12	12	26	1.77
21818343--21818381	20	2.0	20	89	0	60	23	23	15	38	1.92
21818432--21818487	21	2.7	21	88	5	87	35	19	8	35	1.83
21819694--21819724	8	3.8	8	95	4	53	9	0	0	90	0.46
21819694--21819724	9	3.6	9	91	8	55	9	0	0	90	0.46
21822624--21822743	23	5.4	23	77	11	142	47	5	19	27	1.72
21822641--21822687	18	2.6	17	83	9	58	46	6	19	27	1.74
21822623--21822743	47	2.8	44	85	7	158	47	5	19	27	1.71
21824197--21824234	8	4.8	8	84	9	51	18	0	2	78	0.86
21824198--21824236	17	2.3	17	91	8	62	15	0	2	82	0.79
21824198--21824236	9	4.6	9	87	6	55	15	0	2	82	0.79
21824455--21824498	20	2.3	19	84	7	61	79	6	2	11	1.01
21830040--21830078	10	3.6	11	86	13	55	43	0	0	56	0.99
21836150--21836274	3	41.0	3	75	15	105	31	4	4	60	1.33
21837070--21837124	24	2.2	25	83	9	67	14	7	3	74	1.17
21837353--21837395	22	2.0	21	90	4	68	55	9	0	34	1.32
21837518--21837602	37	2.3	37	93	0	143	40	15	10	34	1.82
21841866--21841988	11	11.3	11	77	20	84	82	0	8	8	0.90
21841897--21841989	1	93.0	1	75	0	78	87	1	5	6	0.73
21841884--21841987	21	4.9	20	78	15	95	84	0	5	8	0.81
21841896--21841986	20	4.4	20	81	15	96	85	1	6	6	0.78
21841897--21841988	22	4.4	21	78	12	100	86	1	5	6	0.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21843296--21843497	3	69.0	3	71	17	113	33	2	5	57	1.38
21844375--21844433	25	2.3	26	83	11	70	25	0	5	69	1.09
21844375--21844433	29	2.2	25	85	11	73	25	0	5	69	1.09
21845343--21845394	14	3.8	13	84	7	59	15	11	0	73	1.11
21847785--21847934	30	5.1	28	73	18	103	19	4	32	44	1.71
21847827--21847934	29	3.7	30	75	16	77	20	2	32	44	1.66
21848225--21848262	19	2.0	20	94	5	69	21	5	0	73	1.02
21848899--21848931	14	2.4	14	90	5	50	0	9	3	87	0.63
21855263--21855310	17	2.8	17	84	9	71	33	8	6	52	1.57
21855353--21855515	24	7.1	24	73	15	139	33	3	7	55	1.47
21855353--21855543	66	2.8	65	86	7	256	31	4	9	54	1.51
21855418--21855504	42	2.1	42	84	4	113	32	4	8	55	1.50
21855535--21855647	35	3.2	35	80	8	131	27	5	16	50	1.67
21855614--21855673	22	2.6	23	86	5	86	30	5	13	51	1.62
21856161--21856192	10	3.2	10	100	0	64	46	9	21	21	1.79
21859821--21859923	50	2.0	51	83	5	129	33	16	9	40	1.81
21860727--21860799	34	2.4	31	77	22	82	21	16	10	50	1.75
21860740--21860808	34	2.0	35	86	8	97	24	15	13	46	1.82
21865886--21865929	3	14.7	3	85	0	61	65	27	2	4	1.23
21870942--21870972	7	4.6	7	92	8	55	74	12	12	0	1.08
21870929--21870972	20	2.2	20	87	0	61	75	13	9	2	1.14
21870942--21870972	13	2.3	14	94	5	55	74	12	12	0	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21875551--21875597	18	2.6	18	86	6	60	85	6	8	0	0.75
21876499--21876545	23	2.0	25	87	8	71	59	0	4	36	1.17
21881590--21881649	10	6.3	9	77	9	57	33	11	8	46	1.70
21881601--21881649	19	2.5	20	87	6	66	34	12	8	44	1.71
21887297--21887336	21	1.9	21	85	10	55	32	15	12	40	1.84
21888456--21888498	17	2.6	18	82	14	56	23	2	0	74	0.93
21888606--21888641	18	2.1	17	89	5	54	38	5	0	55	1.23
21888770--21888807	20	1.9	20	100	0	76	0	13	5	81	0.85
21888771--21888828	23	2.5	22	78	10	62	0	12	6	81	0.88
21893313--21893355	14	2.9	15	82	6	52	30	0	2	67	1.03
21893523--21893560	18	2.2	18	85	4	51	28	7	10	52	1.64
21894642--21894750	52	2.1	53	93	5	186	60	2	14	22	1.47
21897838--21897883	24	1.9	24	86	8	67	63	10	0	26	1.27
21897909--21898006	23	3.8	26	79	17	91	57	11	5	26	1.54
21897924--21898024	23	4.2	24	82	9	107	60	9	4	24	1.48
21897868--21898019	25	6.1	24	74	18	109	58	12	5	23	1.54
21897967--21898012	12	3.8	12	74	25	51	56	10	2	30	1.46
21897877--21898019	50	2.9	48	76	16	121	58	12	5	23	1.56
21898198--21898469	14	19.3	14	71	16	152	67	5	8	18	1.37
21898218--21898471	15	17.9	14	71	13	137	67	5	8	18	1.36
21898171--21898469	28	10.5	28	72	15	170	67	5	8	18	1.37
21898218--21898471	27	8.9	28	73	14	132	67	5	8	18	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21902188--21902213	2	13.0	2	100	0	52	50	0	50	0	1.00
21903731--21903771	20	2.0	20	86	9	57	58	0	4	36	1.20
21905258--21905488	116	2.0	114	91	1	372	38	9	7	44	1.65
21911327--21911374	23	2.1	23	96	0	87	25	25	8	41	1.83
21917790--21917871	42	2.0	42	85	4	112	46	2	2	48	1.28
21917775--21917891	42	2.9	41	79	12	100	44	2	5	47	1.38
21918037--21918069	17	1.9	17	100	0	66	48	0	3	48	1.17
21918239--21918279	16	2.7	15	88	7	64	48	0	0	51	1.00
21918242--21918312	25	2.8	25	81	8	90	47	1	0	50	1.09
21920290--21920372	11	7.4	10	70	24	51	69	4	3	21	1.22
21922237--21922274	20	1.9	19	89	5	58	2	21	0	76	0.91
21925573--21925621	20	2.5	20	82	0	62	63	0	4	32	1.13
21925918--21926044	24	5.3	25	75	11	99	53	28	3	14	1.57
21925918--21926042	8	15.9	7	72	18	63	54	28	3	14	1.55
21925918--21926040	16	7.8	16	71	12	76	55	26	3	14	1.55
21930776--21930819	18	2.4	18	80	0	61	81	6	4	6	0.97
21931153--21931177	11	2.3	11	100	0	50	88	0	12	0	0.53
21932786--21932815	13	2.3	13	94	0	51	80	6	10	3	1.01
21933354--21933398	24	1.9	23	86	4	63	22	8	20	48	1.76
21933519--21933632	48	2.4	46	77	11	113	38	15	7	37	1.77
21934433--21934557	35	3.6	35	76	8	112	20	16	9	52	1.71
21934501--21934805	35	8.7	36	75	5	153	21	19	10	49	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21934542--21934722	70	2.6	70	77	5	177	20	20	11	48	1.80
21934840--21935009	35	4.9	35	70	7	94	21	22	10	46	1.80
21934630--21935003	105	3.6	103	74	9	283	21	22	10	45	1.82
21934971--21935162	35	5.5	35	70	9	117	21	20	13	44	1.86
21934819--21935175	139	2.6	139	74	10	343	21	20	12	46	1.83
21935110--21935191	35	2.3	35	83	4	103	20	19	14	45	1.85
21935131--21935218	35	2.5	34	78	7	88	19	18	13	48	1.80
21937996--21938041	16	2.9	16	83	0	65	50	21	2	26	1.60
21939964--21939989	1	26.0	1	100	0	52	100	0	0	0	0.00
21940110--21940146	3	12.0	3	94	5	65	0	32	0	67	0.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160