genome.fa.s334.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  22  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5951918--5951969	21	2.5	21	90	6	79	50	0	0	50	1.00
5951918--5951969	22	2.5	22	93	6	90	50	0	0	50	1.00
5951942--5951998	30	1.9	30	85	0	78	52	1	0	45	1.11
5951957--5952004	16	3.0	16	79	11	53	58	2	0	39	1.10
5953096--5953156	32	1.9	32	86	6	88	19	8	0	72	1.10
5953249--5953289	18	2.2	19	86	4	57	51	0	0	48	1.00
5963285--5963343	13	4.4	14	73	16	54	35	0	0	64	0.94
5963342--5963389	25	1.9	24	83	8	60	50	4	0	45	1.21
5963407--5963466	33	1.9	30	83	10	75	58	1	0	40	1.08
5967846--5967871	7	3.7	7	100	0	52	0	15	57	26	1.38
5968218--5968255	2	19.0	2	100	0	76	0	50	0	50	1.00
5981780--5981812	15	2.1	16	88	5	50	45	6	0	48	1.27
5982691--5982781	30	2.9	32	75	13	100	54	0	0	45	0.99
5991457--5991534	41	1.9	41	91	0	129	48	14	15	21	1.80
5995701--5995763	30	2.1	30	82	5	74	44	0	4	50	1.23
5996439--5996469	16	1.9	16	93	0	53	38	0	0	61	0.96
5996557--5996816	102	2.6	100	77	7	283	29	6	13	50	1.67
5997594--5997671	30	2.6	30	79	4	86	43	0	12	43	1.42
5998001--5998041	12	3.4	12	90	6	57	36	0	0	63	0.95
5998028--5998079	22	2.4	21	90	9	79	50	0	0	50	1.00
5998300--5998346	4	11.8	4	77	8	51	46	25	4	23	1.70
6003625--6003652	3	9.3	3	100	0	56	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6004539--6004575	18	2.1	18	89	0	56	43	8	0	48	1.32
6004571--6004603	14	2.4	14	90	10	50	45	0	0	54	0.99
6005879--6005932	21	2.8	19	76	13	56	40	5	1	51	1.36
6005626--6006214	216	2.7	216	80	8	596	31	7	6	55	1.53
6005847--6006263	221	1.9	219	83	3	532	31	7	6	54	1.53
6007207--6007280	3	26.3	3	76	10	59	62	1	0	36	1.04
6010178--6010224	20	2.5	18	86	6	58	21	4	8	65	1.37
6010413--6010467	19	2.6	22	75	13	53	27	0	5	67	1.12
6010463--6010508	19	2.2	20	82	17	51	23	13	4	58	1.52
6010037--6010731	220	3.2	218	77	6	535	29	8	7	54	1.59
6031817--6031855	2	19.5	2	83	0	51	43	2	0	53	1.14
6035322--6035358	17	2.2	17	90	9	58	43	0	13	43	1.44
6037568--6037621	26	2.0	26	85	3	72	62	14	7	14	1.51
6039321--6039632	60	5.2	57	71	16	170	46	5	9	37	1.61
6040708--6040734	12	2.2	12	100	0	54	7	14	0	77	0.97
6047964--6048004	15	2.7	15	80	3	55	7	12	0	80	0.90
6048490--6048522	15	2.2	15	94	0	57	48	12	18	21	1.80
6053562--6053623	14	4.3	15	89	4	67	16	1	12	69	1.27
6053569--6053631	7	8.7	7	92	3	81	19	0	12	68	1.21
6058288--6058328	3	13.7	3	89	0	64	39	0	29	31	1.57
6058327--6058372	3	16.0	3	91	8	78	65	0	0	34	0.93
6058973--6059020	23	2.0	24	88	4	71	31	6	14	47	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6073612--6073895	143	2.0	141	97	1	532	32	15	12	39	1.85
6074586--6074636	12	4.0	12	80	14	66	1	17	47	33	1.59
6074585--6074636	27	2.0	25	88	7	77	1	19	46	32	1.61
6075565--6075627	17	3.8	18	83	12	73	1	4	12	80	0.93
6075582--6075627	22	2.1	22	88	4	67	0	4	10	84	0.75
6075579--6075630	5	11.0	5	84	12	58	0	3	13	82	0.80
6075794--6076895	48	22.7	49	86	5	1494	33	24	10	30	1.90
6075794--6076895	196	5.7	195	92	2	1758	33	24	10	30	1.90
6080965--6080998	17	2.0	17	94	0	59	70	0	26	2	1.01
6082159--6082210	8	6.5	8	76	8	52	51	23	0	25	1.48
6082158--6082204	15	2.9	16	78	9	51	48	25	0	25	1.51
6082086--6082250	55	3.0	54	75	12	156	48	20	3	27	1.64
6082269--6082341	24	3.0	25	78	11	62	47	27	0	24	1.52
6082272--6082306	16	2.2	16	89	0	52	54	22	0	22	1.45
6082330--6082401	23	3.1	22	81	15	67	51	30	0	18	1.46
6082368--6082424	15	3.7	15	80	2	60	50	31	0	17	1.46
6082368--6082426	23	2.6	23	81	10	68	50	32	0	16	1.46
6082694--6082754	34	1.9	32	83	12	81	63	0	6	29	1.19
6084373--6084565	81	2.4	81	80	6	194	34	10	15	39	1.82
6084420--6084576	81	1.9	81	84	2	208	35	12	14	38	1.83
6092150--6092567	111	3.6	115	79	11	458	22	9	19	47	1.79
6095515--6095573	2	29.5	2	89	0	91	44	0	3	52	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6095753--6095784	3	10.7	3	100	0	64	34	31	34	0	1.58
6096585--6096623	2	19.5	2	94	0	69	48	0	0	51	1.00
6097367--6097422	27	2.1	27	100	0	112	37	14	10	37	1.81
6099156--6099193	17	2.2	17	86	9	51	28	2	15	52	1.56
6104001--6104031	16	1.9	16	93	0	53	38	12	9	38	1.77
6104556--6104621	5	13.4	5	72	15	57	75	6	3	15	1.11
6104556--6104630	15	5.1	14	74	16	55	77	6	2	13	1.07
6108200--6108240	3	13.7	3	94	0	73	31	2	0	65	1.05
6108963--6109158	3	67.3	3	71	20	98	30	3	2	63	1.23
6110716--6110903	44	4.4	42	75	14	152	38	14	13	32	1.85
6111285--6111343	23	2.6	23	89	2	93	27	15	22	35	1.94
6111499--6111580	22	3.7	22	78	3	92	21	15	28	34	1.95
6112156--6112207	21	2.5	21	96	0	95	42	5	21	30	1.76
6113394--6113477	7	11.7	7	80	13	50	10	3	4	80	0.97
6113381--6113453	10	7.9	9	76	10	51	4	5	6	83	0.90
6120939--6120984	3	15.3	3	100	0	92	32	0	0	67	0.91
6122191--6122254	34	1.9	33	84	9	85	34	0	3	62	1.11
6141880--6142046	83	2.0	83	91	2	273	20	13	19	46	1.83
6161410--6161526	59	2.0	58	90	5	182	35	14	4	46	1.64
6161717--6161776	31	1.9	31	83	6	77	36	3	1	58	1.25
6162222--6162256	18	2.0	17	94	5	61	68	2	0	28	1.04
6171390--6171453	28	2.2	30	78	15	73	40	4	1	53	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6171435--6171539	46	2.3	47	81	5	124	46	7	0	44	1.38
6175126--6175155	13	2.2	14	94	5	53	33	0	0	66	0.92
6175155--6175212	21	2.7	22	76	10	57	46	0	0	53	1.00
6175161--6175239	26	3.1	26	70	22	69	48	0	1	50	1.08
6176726--6176755	15	2.0	15	93	0	51	76	0	23	0	0.78
6189676--6189705	6	5.0	6	91	0	51	16	20	33	30	1.94
6190188--6190216	2	14.5	2	100	0	58	48	0	0	51	1.00
6190876--6190914	19	2.1	19	85	9	53	61	0	10	28	1.28
6193270--6193321	25	2.1	25	96	0	95	21	13	13	51	1.74
6207608--6207645	20	1.9	20	88	0	58	52	0	0	47	1.00
6216265--6216318	27	2.0	27	82	7	65	48	0	0	51	1.00
6216297--6216330	8	4.1	8	88	7	50	38	2	0	58	1.13
6216298--6216330	17	1.9	17	93	0	57	36	3	0	60	1.12
6216299--6216339	17	2.4	17	87	0	55	41	2	0	56	1.13
6217591--6217647	18	3.1	18	89	2	87	29	1	0	68	1.00
6217964--6218007	22	1.9	22	86	9	61	59	0	2	38	1.10
6227773--6227926	77	2.0	77	94	0	272	42	13	22	21	1.87
6232838--6232879	20	2.1	20	82	8	50	33	2	2	61	1.21
6232897--6232970	30	2.7	29	77	14	75	58	0	4	37	1.17
6233585--6233638	21	2.5	21	81	3	63	57	0	5	37	1.22
6233753--6233790	20	2.0	20	89	5	60	36	0	2	60	1.11
6235008--6235034	11	2.5	11	100	0	54	0	11	0	88	0.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6235178--6235215	10	3.5	11	83	16	53	44	5	0	50	1.24
6236204--6236303	44	2.2	44	79	13	105	40	1	7	52	1.35
6238093--6238123	15	2.0	16	93	6	55	3	6	0	90	0.55
6240544--6240584	19	2.2	19	86	8	57	53	0	2	43	1.13
6247097--6247144	22	2.1	24	88	7	73	52	0	0	47	1.00
6249100--6249148	23	2.1	23	88	0	71	36	0	28	34	1.58
6249135--6249190	21	2.6	21	81	16	62	48	0	19	32	1.49
6250405--6250456	26	2.0	25	85	10	70	32	0	1	65	1.04
6252720--6252759	17	2.3	18	82	4	55	55	5	0	40	1.22
6254941--6254978	18	2.2	18	85	4	51	7	2	10	78	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160