genome.fa.s334.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  31  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7841560--7841618	27	2.3	26	78	16	68	57	1	0	40	1.09
7841554--7841619	28	2.3	28	87	7	89	59	1	0	39	1.07
7841576--7841620	14	3.3	13	80	20	56	60	2	0	37	1.09
7841870--7841894	2	12.5	2	100	0	50	48	0	0	52	1.00
7842783--7842816	2	17.0	2	100	0	68	50	0	50	0	1.00
7844946--7844984	2	20.0	2	94	5	71	51	0	48	0	1.00
7852949--7852980	10	3.1	11	91	8	50	40	0	0	59	0.97
7853058--7853082	3	8.3	3	100	0	50	68	0	0	32	0.90
7855635--7855693	30	2.0	29	90	3	91	45	11	18	23	1.83
7860852--7860908	29	2.0	29	85	0	78	45	1	1	50	1.22
7870468--7870524	29	2.0	29	89	0	87	29	5	7	57	1.47
7878950--7879008	29	2.0	29	86	0	82	42	8	1	47	1.44
7880956--7880982	12	2.2	12	100	0	54	85	0	0	14	0.61
7885965--7885998	17	2.0	17	88	0	50	35	11	5	47	1.65
7892945--7892983	18	2.1	19	85	4	53	74	0	7	17	1.05
7895772--7895822	26	2.0	26	100	0	102	27	17	11	43	1.84
7899503--7899606	52	2.0	52	81	3	120	33	21	4	40	1.74
7900448--7900550	50	2.0	52	83	3	129	30	15	7	46	1.74
7900567--7900613	22	2.1	22	88	0	67	57	19	0	23	1.41
7902356--7902390	17	2.0	17	88	5	52	25	0	0	74	0.82
7902980--7903005	12	2.2	12	100	0	52	23	0	7	69	1.14
7903728--7903787	7	8.4	7	81	1	66	70	0	3	26	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7903728--7903782	21	2.6	21	83	11	76	69	0	1	29	0.99
7903728--7903803	29	2.7	29	81	8	84	67	2	2	27	1.18
7908122--7908170	20	2.4	21	86	10	66	51	0	6	42	1.27
7908122--7908162	21	2.0	20	90	9	64	58	0	4	36	1.20
7908439--7908477	1	39.0	1	84	0	51	7	0	0	92	0.39
7911783--7911811	13	2.3	13	94	5	51	31	0	10	58	1.31
7911864--7911915	24	2.2	24	85	0	68	23	3	26	46	1.69
7911875--7911953	24	3.3	24	84	7	90	22	5	27	44	1.74
7911863--7911961	40	2.5	41	82	9	116	25	4	25	45	1.71
7911910--7911962	24	2.2	24	96	0	97	24	3	22	49	1.66
7911982--7912055	31	2.4	31	84	8	89	14	2	28	54	1.55
7912005--7912055	8	6.5	8	77	4	50	11	1	29	56	1.46
7911982--7912055	16	4.7	15	77	11	60	14	2	28	54	1.55
7912019--7912063	23	2.0	23	82	8	56	13	0	33	53	1.40
7911965--7912086	55	2.2	55	80	7	142	19	2	27	50	1.60
7912157--7912207	16	3.2	16	86	2	59	19	0	23	56	1.42
7912036--7912277	121	2.0	121	95	0	439	23	4	19	52	1.63
7912205--7912240	16	2.2	16	90	0	54	13	11	27	47	1.77
7912549--7912581	3	11.7	3	87	12	52	30	0	0	69	0.88
7912550--7912581	14	2.3	14	94	0	55	31	0	0	68	0.90
7912769--7912793	3	8.3	3	100	0	50	68	0	0	32	0.90
7928897--7928935	20	1.9	20	89	5	60	79	2	15	2	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7929812--7929850	20	2.0	20	94	0	69	33	5	7	53	1.51
7929917--7930009	33	2.8	35	75	15	90	32	4	8	54	1.50
7929959--7929998	21	1.9	21	89	0	62	25	5	10	60	1.49
7929874--7929972	52	1.9	52	91	0	162	33	3	6	57	1.38
7930177--7930250	20	4.0	19	70	21	59	35	6	9	48	1.62
7935335--7935374	21	2.0	21	85	5	55	20	25	5	50	1.68
7939028--7939354	172	1.9	172	86	0	465	43	21	14	21	1.87
7939488--7939523	18	2.0	18	88	0	54	58	0	11	30	1.33
7940285--7940325	18	2.3	18	95	0	73	31	19	9	39	1.84
7943098--7943216	63	1.9	63	94	0	211	32	20	11	35	1.89
7943343--7943379	17	2.2	17	90	4	58	48	13	0	37	1.43
7943350--7943384	17	2.1	17	89	5	54	54	8	0	37	1.31
7945234--7945275	11	3.8	11	80	0	57	50	28	0	21	1.49
7945234--7945276	22	2.0	22	90	0	68	48	27	0	23	1.51
7945549--7945612	25	2.6	25	70	7	58	21	31	9	37	1.85
7946144--7946248	52	2.0	52	83	3	131	25	26	9	38	1.87
7946275--7946314	11	3.6	11	82	0	53	50	27	0	22	1.50
7946589--7946652	25	2.6	25	70	7	58	21	31	9	37	1.85
7947184--7947288	52	2.0	52	83	3	131	25	26	9	38	1.87
7947315--7947354	11	3.6	11	82	0	53	50	27	0	22	1.50
7948352--7948393	11	3.8	11	80	0	57	50	28	0	21	1.49
7948352--7948394	22	2.0	22	90	0	68	48	27	0	23	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7957277--7957475	56	3.6	56	81	2	222	43	15	15	25	1.85
7968814--7968910	49	1.9	50	83	8	126	24	16	8	50	1.72
7969546--7969576	4	7.8	4	92	0	53	77	3	0	19	0.90
7969544--7969586	12	3.6	12	84	6	52	79	2	0	18	0.85
7970390--7970435	12	3.5	13	85	14	60	13	4	0	82	0.81
7970390--7970432	7	6.4	7	83	5	54	11	4	0	83	0.78
7970403--7970435	6	5.3	6	96	3	57	15	0	0	84	0.61
7970625--7971006	43	8.8	43	85	1	458	43	17	14	24	1.87
7970618--7971006	174	2.2	173	84	0	526	43	17	14	24	1.86
7972719--7972774	17	3.1	19	77	12	64	16	21	0	62	1.32
7972738--7972817	17	4.8	17	73	14	67	15	21	0	63	1.30
7972745--7972818	33	2.2	34	82	4	87	14	20	0	64	1.28
7974447--7974727	138	2.0	137	88	2	420	25	19	12	42	1.87
7976674--7977013	60	5.8	59	82	7	406	36	11	5	46	1.63
7977030--7977103	5	13.4	5	74	23	60	74	0	4	21	0.98
7976675--7977013	119	2.9	119	89	2	497	36	11	5	46	1.62
7977040--7977103	5	12.0	5	78	18	67	75	0	3	21	0.95
7976735--7977062	119	2.8	119	84	3	286	40	10	5	43	1.62
7977042--7977103	27	2.3	26	81	13	72	75	0	3	20	0.94
7977047--7977114	21	3.4	21	76	19	74	73	1	2	22	1.05
7977024--7977114	38	2.4	38	83	12	107	71	1	5	21	1.13
7977399--7977446	19	2.8	17	76	14	53	0	37	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7977964--7978003	13	3.1	13	85	7	55	75	0	2	22	0.93
7978005--7978043	18	2.2	18	90	0	60	61	5	5	28	1.39
7978021--7978063	14	3.0	14	86	10	52	62	4	4	27	1.35
7978031--7978075	24	2.0	22	86	8	63	62	4	6	26	1.39
7978003--7978094	40	2.3	42	80	14	113	59	6	5	28	1.44
7978036--7978171	59	2.3	60	80	13	147	62	3	5	28	1.34
7983037--7983404	200	1.8	200	82	5	476	36	9	6	48	1.60
7986172--7986210	17	2.2	17	86	4	51	38	7	0	53	1.30
7990242--7990288	20	2.2	22	92	7	80	63	0	0	36	0.94
7990227--7990306	26	3.0	26	75	13	72	61	0	0	38	0.96
7990264--7990326	25	2.4	27	77	17	71	55	0	1	42	1.09
7992182--7992208	12	2.2	12	100	0	54	40	0	0	59	0.98
8002224--8002259	14	2.6	14	90	0	54	58	2	2	36	1.27
8002521--8002620	30	3.3	30	82	0	119	33	2	3	62	1.22
8002646--8002723	31	2.6	28	77	18	77	51	1	0	47	1.09
8005210--8005261	13	4.2	13	75	9	54	46	0	1	51	1.12
8005206--8005307	42	2.4	41	82	12	111	50	0	1	47	1.12
8009785--8009841	26	2.2	26	78	9	64	36	0	0	63	0.95
8009772--8009845	6	12.0	6	77	5	58	33	0	2	63	1.09
8011133--8011286	27	6.0	26	73	20	83	51	9	4	34	1.54
8011192--8011266	20	3.4	22	77	15	82	50	12	5	32	1.62
8011200--8011301	47	2.2	47	84	6	120	51	8	3	35	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8011192--8011268	23	3.5	21	80	15	84	50	11	5	32	1.61
8011229--8011271	20	2.4	17	75	20	50	48	11	4	34	1.60
8011234--8011301	20	3.0	20	69	25	55	51	8	4	35	1.53
8011305--8011370	16	4.1	16	80	2	69	48	13	7	30	1.70
8012316--8012521	75	2.7	75	85	3	254	39	18	11	30	1.86
8012285--8012521	37	6.4	37	80	4	235	39	18	11	30	1.87
8012285--8012523	112	2.1	111	83	6	313	39	18	11	30	1.86
8012513--8012609	43	2.3	43	85	0	122	47	15	8	28	1.74
8012537--8012646	43	2.6	43	83	2	123	43	15	10	30	1.79
8012671--8012732	21	2.9	22	73	4	72	29	8	22	40	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160