genome.fa.s334.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168159.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_4, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33012953

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   

This is table  41  of  160  ( 19195 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9455886--9456361	114	4.1	114	81	2	452	42	16	19	21	1.89
9455988--9456174	60	3.2	59	68	14	154	42	15	18	22	1.88
9455900--9456314	231	1.8	228	80	1	497	41	16	20	22	1.90
9456550--9456702	41	3.7	41	77	6	157	32	18	15	32	1.93
9467570--9467628	21	2.7	22	79	12	59	27	3	10	59	1.46
9467577--9467628	22	2.4	21	81	12	61	21	3	11	63	1.43
9467757--9467797	6	7.0	6	83	10	50	73	0	0	26	0.84
9468742--9468824	3	28.3	3	79	16	59	69	3	3	22	1.19
9468661--9468817	55	2.8	55	92	2	244	73	4	5	16	1.17
9468663--9468790	6	20.8	6	75	17	52	75	4	4	14	1.13
9468871--9468920	26	1.9	26	83	0	64	30	26	24	20	1.98
9469922--9469956	4	8.8	4	87	0	52	48	2	0	48	1.16
9471806--9471842	19	1.9	19	100	0	74	48	5	13	32	1.65
9471826--9472090	54	4.8	54	77	11	211	33	9	4	52	1.56
9471825--9472153	109	3.0	108	78	12	278	33	9	5	52	1.56
9471825--9472153	110	3.0	108	78	12	330	33	9	5	52	1.56
9471880--9472153	54	4.9	55	76	10	184	33	9	5	52	1.56
9472934--9472999	9	7.1	9	75	13	53	74	3	3	19	1.09
9472936--9473001	21	3.2	21	76	16	59	75	3	3	18	1.06
9473218--9473269	22	2.4	22	80	6	61	40	9	11	38	1.74
9473299--9473362	31	2.1	31	96	0	119	42	7	9	40	1.66
9473471--9473552	17	4.8	17	70	0	56	40	13	13	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9473567--9473619	17	3.1	17	75	0	61	43	13	11	32	1.79
9473537--9473624	34	2.6	34	87	1	124	46	13	10	29	1.76
9475135--9475168	7	4.9	7	96	0	50	5	5	0	88	0.64
9477939--9478091	74	2.1	74	89	0	234	36	15	11	36	1.83
9478122--9478154	16	2.1	16	100	0	66	39	0	24	36	1.56
9478570--9479084	55	9.3	53	75	12	328	33	8	6	51	1.58
9478601--9479084	110	4.4	110	78	10	409	34	8	6	51	1.57
9478601--9479084	165	2.9	161	76	9	458	34	8	6	51	1.57
9483211--9483276	29	2.2	30	86	2	98	40	4	3	51	1.38
9487873--9487904	7	4.7	7	92	7	57	28	15	12	43	1.83
9491463--9491496	17	2.0	17	94	0	59	20	0	0	79	0.73
9492531--9492598	23	2.9	23	72	12	66	27	7	0	64	1.20
9495414--9495459	21	2.2	21	92	7	76	67	0	8	23	1.18
9495470--9495517	17	2.8	16	87	6	60	58	8	8	25	1.55
9495463--9495526	17	3.8	16	81	4	56	62	6	6	25	1.42
9495870--9495907	20	1.9	20	88	0	58	50	10	7	31	1.66
9495903--9495986	20	4.4	18	76	8	69	54	14	9	21	1.68
9495928--9495986	18	3.2	18	76	9	55	57	15	6	20	1.60
9496227--9496268	19	2.3	18	87	4	57	57	9	11	21	1.63
9496155--9496268	18	6.3	18	70	14	65	52	12	10	24	1.70
9496257--9496303	17	2.8	16	87	6	58	51	6	10	31	1.62
9496355--9496423	21	3.2	21	68	13	59	46	20	7	26	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9497229--9497263	16	2.2	16	90	10	54	68	14	0	17	1.21
9497532--9497581	19	2.7	19	75	3	57	6	16	2	76	1.08
9497563--9497592	15	2.0	15	93	0	51	6	23	0	70	1.11
9501862--9501887	13	2.0	13	100	0	52	38	0	0	61	0.96
9502784--9502825	21	2.0	21	86	9	59	69	0	7	23	1.13
9502829--9502875	17	2.8	17	74	6	51	65	8	2	23	1.31
9505552--9505636	25	3.4	24	69	7	62	25	14	20	40	1.90
9506327--9506824	44	11.2	45	76	11	415	37	9	9	43	1.69
9506287--9506824	133	4.0	133	76	10	472	37	8	9	44	1.68
9506380--9506581	21	9.1	22	65	19	98	39	7	10	43	1.67
9506327--9506824	89	5.6	88	77	10	401	37	9	9	43	1.69
9506791--9506829	20	2.0	20	94	0	69	33	7	10	48	1.66
9506327--9506854	222	2.4	221	79	8	488	37	9	9	44	1.69
9507020--9507112	42	2.2	41	83	7	116	33	8	9	48	1.67
9507039--9507143	41	2.5	42	84	1	131	35	9	11	43	1.73
9509201--9509229	15	1.9	15	100	0	58	55	0	0	44	0.99
9510428--9510468	18	2.4	16	84	15	55	48	4	0	46	1.23
9510560--9510590	7	4.6	7	96	4	55	25	0	0	74	0.82
9512720--9512773	27	2.0	27	82	13	67	35	5	1	57	1.33
9513204--9513254	22	2.3	22	87	9	77	52	0	0	47	1.00
9513203--9513249	11	4.4	11	79	12	53	53	0	0	46	1.00
9513329--9513353	8	3.1	8	100	0	50	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9518431--9518471	16	2.6	16	88	0	55	41	7	12	39	1.70
9518601--9518654	16	3.4	16	84	0	63	48	7	5	38	1.55
9519025--9519084	22	2.7	22	84	0	84	38	35	3	23	1.71
9526080--9526126	7	6.9	7	76	13	53	65	0	2	31	1.04
9526073--9526144	28	2.9	24	75	16	74	63	0	2	33	1.08
9529732--9529826	35	2.7	35	75	8	95	34	8	12	44	1.73
9530778--9530832	17	3.2	18	80	12	55	5	23	1	69	1.19
9536263--9536296	15	2.3	15	89	0	50	61	5	0	32	1.20
9541557--9541603	13	3.5	13	76	21	51	0	42	2	55	1.12
9545033--9545076	22	2.0	22	100	0	88	22	18	22	36	1.95
9559282--9559343	26	2.3	25	81	10	61	35	3	3	58	1.31
9561048--9561092	20	2.2	21	84	4	56	53	11	2	33	1.49
9561184--9561489	54	5.7	53	70	5	173	44	6	11	37	1.67
9561202--9561478	55	5.1	55	70	6	161	45	7	10	36	1.67
9561653--9561728	27	2.7	27	85	4	89	47	11	17	23	1.80
9562169--9562444	140	2.0	140	94	1	482	36	7	14	40	1.75
9562197--9562487	140	2.1	140	86	4	399	37	9	14	38	1.78
9564916--9564957	21	1.9	22	85	9	59	26	4	0	69	1.08
9564979--9565012	16	2.1	16	88	0	50	58	0	0	41	0.98
9565000--9565185	96	2.0	94	83	8	234	39	11	10	37	1.77
9570119--9570221	46	2.2	46	83	6	129	35	5	16	41	1.72
9570459--9570493	17	2.1	17	94	0	61	31	14	11	42	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9570464--9570541	17	4.6	17	76	6	77	28	16	19	35	1.93
9570580--9570616	18	2.1	18	94	0	65	37	5	13	43	1.67
9570638--9570706	35	2.0	34	86	8	95	37	10	17	34	1.83
9570682--9570800	52	2.3	52	82	5	134	36	13	15	34	1.87
9570734--9570826	35	2.7	35	84	0	123	32	13	18	35	1.90
9570734--9570818	18	4.8	18	73	4	66	32	12	17	36	1.88
9570734--9570842	35	3.1	34	81	2	119	33	13	18	34	1.90
9572048--9572075	1	28.0	1	100	0	56	0	0	0	100	0.00
9572595--9572642	22	2.2	22	81	7	53	43	12	2	41	1.54
9575244--9575305	26	2.3	27	83	2	72	19	6	25	48	1.72
9575283--9575349	13	5.3	13	75	12	59	20	7	22	49	1.74
9576037--9576106	27	2.5	28	77	11	72	31	4	0	64	1.13
9576161--9576336	90	2.0	88	93	4	302	36	5	7	50	1.54
9576186--9576330	46	3.2	46	65	18	122	37	5	6	49	1.53
9576745--9576778	1	34.0	1	87	0	50	94	0	5	0	0.32
9576918--9576948	12	2.6	12	94	0	53	87	3	9	0	0.66
9577836--9577869	16	2.2	15	94	5	59	38	0	0	61	0.96
9578172--9578205	10	3.3	10	91	4	50	0	0	14	85	0.60
9578171--9578238	19	3.7	18	78	9	57	8	2	11	76	1.12
9578201--9578238	19	1.9	19	89	5	58	13	5	7	73	1.22
9578279--9578373	35	2.7	35	74	4	50	47	6	24	22	1.74
9578410--9578577	34	4.9	34	77	3	131	46	11	23	17	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9578534--9578692	70	2.3	70	75	4	160	48	6	22	22	1.74
9578639--9578722	35	2.4	35	86	2	107	51	0	21	27	1.48
9578670--9578785	34	3.4	34	79	3	90	50	8	21	18	1.73
9578956--9579046	31	2.9	30	74	6	92	45	16	19	18	1.86
9579057--9579115	23	2.6	23	83	2	66	20	23	22	33	1.97
9579050--9579115	22	3.0	23	77	6	73	21	21	19	37	1.94
9579229--9579351	32	3.8	32	77	14	126	30	16	19	34	1.94
9579493--9579757	34	8.0	34	74	12	167	35	13	15	35	1.87
9579400--9579584	101	1.8	101	80	2	219	31	12	18	37	1.88
9579509--9579681	67	2.7	65	80	5	172	34	14	15	35	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160